Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 1.8e-240 835.5 421 100.0
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 8.6e-158 560.8 421 67.5
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 4.0e-155 552.0 422 65.6
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 1.3e-153 547.0 425 66.6
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 9.3e-152 540.8 430 65.6
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 9.3e-152 540.8 430 65.6
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 5.1e-150 535.0 427 63.9
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 6.6e-150 534.6 429 63.6
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 7.3e-149 531.2 426 63.8
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 7.3e-149 531.2 426 65.3
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 9.6e-149 530.8 429 63.9
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 4.8e-148 528.5 429 63.9
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 8.1e-148 527.7 426 62.9
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 1.5e-146 523.5 425 64.2
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 3.4e-146 522.3 426 63.4
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 5.8e-146 521.5 426 63.1
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 1.1e-144 517.3 421 62.5
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 4.2e-144 515.4 426 62.9
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 5.4e-144 515.0 425 62.1
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 7.1e-144 514.6 427 64.4
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 2.1e-143 513.1 426 63.1
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 2.7e-143 512.7 427 62.1
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 2.7e-143 512.7 429 62.0
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 3.5e-143 512.3 426 63.8
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 7.9e-143 511.1 424 61.3
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 1.8e-142 510.0 426 61.3
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 8.7e-142 507.7 425 63.1
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 1.5e-141 506.9 421 62.5
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 1.9e-141 506.5 424 62.7
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 5.6e-141 505.0 424 62.5
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 1.6e-140 503.4 424 60.8
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 8.1e-140 501.1 422 59.5
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 4.0e-139 498.8 425 60.7
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 4.0e-139 498.8 422 59.7
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 5.3e-139 498.4 429 60.8
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 9.0e-139 497.7 423 59.6
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 9.0e-139 497.7 426 60.1
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 2.0e-138 496.5 424 58.5
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 4.5e-138 495.4 425 61.2
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 5.8e-138 495.0 415 60.2
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 7.6e-138 494.6 426 59.2
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 2.2e-137 493.0 425 62.4
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 2.2e-137 493.0 428 61.2
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 2.9e-137 492.7 415 60.0
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 3.8e-137 492.3 423 60.5
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 4.9e-137 491.9 423 60.8
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 4.9e-137 491.9 427 59.7
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 6.4e-137 491.5 426 61.5
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 8.4e-137 491.1 423 60.5
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 3.2e-136 489.2 428 62.1
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 4.2e-136 488.8 424 59.0
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 5.5e-136 488.4 422 60.0
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 5.5e-136 488.4 416 59.6
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 7.1e-136 488.0 415 59.5
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 1.2e-135 487.3 428 59.8
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 1.2e-135 487.3 426 61.0
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 4.6e-135 485.3 428 59.6
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 4.6e-135 485.3 424 59.4
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 4.6e-135 485.3 388 63.4
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 7.9e-135 484.6 427 57.8
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 7.9e-135 484.6 426 60.6
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 1.9e-133 479.9 419 58.0
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 4.3e-133 478.8 426 60.3
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 7.4e-133 478.0 423 56.3
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 9.6e-133 477.6 468 56.4
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 1.6e-132 476.9 429 60.1
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 3.7e-132 475.7 426 58.0
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 8.2e-132 474.6 423 57.0
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 1.4e-131 473.8 467 56.1
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 1.8e-131 473.4 419 57.3
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 3.1e-131 472.6 428 58.2
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 5.3e-131 471.9 425 57.6
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 6.9e-131 471.5 416 58.4
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 1.5e-130 470.3 424 59.2
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 3.4e-130 469.2 423 56.5
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 1.3e-129 467.2 388 61.9
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 1.7e-129 466.8 422 56.2
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 2.2e-129 466.5 419 56.3
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 4.9e-129 465.3 417 57.1
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 5.5e-128 461.8 424 56.1
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 5.5e-128 461.8 424 56.1
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 7.9e-127 458.0 424 55.0
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 1.8e-126 456.8 412 56.1
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 2.3e-126 456.4 424 55.0
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 6.7e-126 454.9 424 55.0
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 4.3e-125 452.2 427 56.9
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 5.7e-125 451.8 424 55.0
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 1.3e-124 450.7 424 54.7
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 1.3e-124 450.7 413 57.6
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 4.8e-124 448.7 412 57.8
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 5.9e-122 441.8 419 54.4
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 7.6e-122 441.4 419 55.6
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 1.0e-118 431.0 423 53.9
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 1.3e-116 424.1 425 52.9
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.4e-115 419.9 468 51.7
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 6.9e-115 418.3 468 50.9
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 7.7e-114 414.8 468 51.1
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.2e-113 413.3 468 50.9
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 3.8e-113 412.5 426 51.6
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 3.8e-113 412.5 451 51.9
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 6.5e-113 411.8 471 50.3
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 7.9e-111 404.8 469 50.1
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 1.1e-107 394.4 428 52.3
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 6.5e-97 358.6 420 47.9
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 1.4e-91 340.9 426 46.9
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 5.0e-89 332.4 372 50.3
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 5.5e-88 328.9 294 57.1
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 5.9e-82 308.9 462 38.1
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 6.6e-81 305.4 264 58.3
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 3.3e-80 303.1 432 43.1
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 2.1e-79 300.4 431 43.2
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 9.5e-72 275.0 383 40.5
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 1.4e-70 271.2 239 57.7
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 2.9e-68 263.5 370 38.1
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 1.2e-63 248.1 425 38.1
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 2.8e-63 246.9 370 38.1
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 4.4e-61 239.6 237 54.9
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 5.8e-61 239.2 206 60.2
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 9.8e-61 238.4 383 37.3
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 6.0e-58 229.2 388 36.9
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 7.8e-58 228.8 388 36.6
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 9.5e-56 221.9 203 58.1
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 6.2e-55 219.2 203 57.6
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 9.9e-53 211.8 167 61.7
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 1.1e-48 198.4 199 55.3
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 2.0e-45 187.6 186 52.2
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 6.6e-41 172.6 215 45.6
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 1.7e-28 131.3 203 41.9
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 1.9e-27 127.9 409 25.4
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 2.1e-26 124.4 278 27.7
A09p50030 Brassica napus HOM05D001925 ORTHO05D005701 1.8e-25 121.3 88 64.8
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 1.3e-15 88.6 192 32.3
MBI04_g47116_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 1.4e-14 85.1 197 31.0
Thhalv10027287m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 2.0e-13 81.3 85 45.9
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 2.6e-13 80.9 44 86.4
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 7.1e-11 72.8 402 22.9
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 2.1e-10 71.2 40 85.0
SGA_v2.0_scaffold2881G54235 Striga asiatica HOM05D001925 ORTHO05D005701 4.8e-07 60.1 45 62.2
Cre07.g355200 Chlamydomonas reinhardtii HOM05D001925 ORTHO05D005701 6.3e-07 59.7 405 21.0


User provided reference genes

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