Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0003360 Simmondsia chinensis HOM05D005367 ORTHO05D006328 2.0e-99 365.9 206 100.0
Hund16930 Selenicereus undatus HOM05D005367 ORTHO05D006328 7.7e-43 177.9 167 55.7
Dinv43805 Davidia involucrata HOM05D005367 ORTHO05D006328 8.0e-40 167.9 175 51.4
Haze_15487 Corylus avellana HOM05D005367 ORTHO05D006328 4.8e-37 158.7 176 49.4
Cfa003939 Carpinus fangiana HOM05D005367 ORTHO05D006328 7.0e-36 154.8 180 49.4
CiPaw.02G029900 Carya illinoinensis HOM05D005367 ORTHO05D006328 4.5e-35 152.1 177 45.2
EL10Ac1g00429 Beta vulgaris HOM05D005367 ORTHO05D006328 1.3e-34 150.6 169 51.5
GSVIVG01026893001 Vitis vinifera HOM05D005367 ORTHO05D006328 1.7e-34 150.2 169 47.3
Nn1g01501 Nelumbo nucifera HOM05D005367 ORTHO05D006328 2.9e-34 149.4 172 48.3
QL08p049031 Quercus lobata HOM05D005367 ORTHO05D006328 9.5e-33 144.4 174 48.3
CSS0033809 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 2.8e-32 142.9 173 47.4
Hma1.2p1_0001F.1_g001380 Hydrangea macrophylla HOM05D005367 ORTHO05D006328 1.4e-31 140.6 173 48.0
AUR62004342 Chenopodium quinoa HOM05D005367 ORTHO05D006328 6.8e-31 138.3 151 51.0
Migut.B01742 Erythranthe guttata HOM05D005367 ORTHO05D006328 8.9e-31 137.9 160 48.1
Prupe.2G167900 Prunus persica HOM05D005367 ORTHO05D006328 8.9e-31 137.9 168 46.4
Cpa.g.sc18.245 Carica papaya HOM05D005367 ORTHO05D006328 1.2e-30 137.5 170 46.5
TAR375G0799 Trochodendron aralioides HOM05D005367 ORTHO05D006328 1.5e-30 137.1 168 45.8
CSS0040093 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 2.0e-30 136.7 171 46.8
Ah.05g180710 Amaranthus hybridus HOM05D005367 ORTHO05D006328 2.6e-30 136.3 168 48.2
Lj9A582T87 Lonicera japonica HOM05D005367 ORTHO05D006328 5.7e-30 135.2 172 44.8
SalBow3G2019 Salvia bowleyana HOM05D005367 ORTHO05D006328 9.8e-30 134.4 169 47.3
Actinidia20916 Actinidia chinensis HOM05D005367 ORTHO05D006328 1.3e-29 134.0 173 47.4
Ciclev10021865m.g Citrus clementina HOM05D005367 ORTHO05D006328 2.2e-29 133.3 168 45.8
Gohir.D08G152300 Gossypium hirsutum HOM05D005367 ORTHO05D006328 3.7e-29 132.5 173 44.5
MSTRG.20826 Avicennia marina HOM05D005367 ORTHO05D006328 4.9e-29 132.1 171 45.0
Nn6g33454 Nelumbo nucifera HOM05D005367 ORTHO05D006328 4.9e-29 132.1 170 44.7
TWI14G0016 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 4.9e-29 132.1 170 42.9
vmacro13291 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 8.3e-29 131.3 172 45.3
Gorai.007G098700 Gossypium raimondii HOM05D005367 ORTHO05D006328 1.4e-28 130.6 168 45.2
Gorai.004G158200 Gossypium raimondii HOM05D005367 ORTHO05D006328 3.1e-28 129.4 173 43.9
Duzib133G0249 Durio zibethinus HOM05D005367 ORTHO05D006328 7.0e-28 128.3 171 45.6
Gohir.A08G130800 Gossypium hirsutum HOM05D005367 ORTHO05D006328 7.0e-28 128.3 173 42.8
Gohir.A11G088100 Gossypium hirsutum HOM05D005367 ORTHO05D006328 7.0e-28 128.3 169 46.2
Gohir.D11G092400 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.2e-27 127.5 162 46.9
Oeu056369.1 Olea europaea HOM05D005367 ORTHO05D006328 1.2e-27 127.5 173 41.6
Potri.002G158500 Populus trichocarpa HOM05D005367 ORTHO05D006328 1.2e-27 127.5 174 43.7
MD07G1139200 Malus domestica HOM05D005367 ORTHO05D006328 1.6e-27 127.1 169 46.2
RcHm_v2.0_Chr1g0355051 Rosa chinensis HOM05D005367 ORTHO05D006328 1.6e-27 127.1 171 43.3
COL.COLO4_12698 Corchorus olitorius HOM05D005367 ORTHO05D006328 2.0e-27 126.7 177 45.8
MD01G1057500 Malus domestica HOM05D005367 ORTHO05D006328 2.0e-27 126.7 169 46.2
Potri.014G082600 Populus trichocarpa HOM05D005367 ORTHO05D006328 2.0e-27 126.7 173 41.6
Thecc.01G360700 Theobroma cacao HOM05D005367 ORTHO05D006328 2.7e-27 126.3 163 44.2
Cc02_g37850 Coffea canephora HOM05D005367 ORTHO05D006328 4.5e-27 125.6 172 42.4
HanXRQChr16g0522831 Helianthus annuus HOM05D005367 ORTHO05D006328 4.5e-27 125.6 172 43.0
SGA_v2.0_scaffold11G05663 Striga asiatica HOM05D000368 ORTHO05D006328 1.0e-26 124.4 164 44.5
TAR636G2389 Trochodendron aralioides HOM05D003133 ORTHO05D003642 1.0e-26 124.4 179 44.1
Peaxi162Scf00191g01425 Petunia axillaris HOM05D005367 ORTHO05D006328 2.3e-26 123.2 160 42.5
Manes.01G258500 Manihot esculenta HOM05D005367 ORTHO05D006328 3.8e-26 122.5 178 40.4
Manes.05G036200 Manihot esculenta HOM05D005367 ORTHO05D006328 3.8e-26 122.5 174 42.0
PSO782G1827 Papaver somniferum HOM05D005367 ORTHO05D006328 3.8e-26 122.5 154 44.8
Atru.chr5.466 Acer truncatum HOM05D005367 ORTHO05D006328 5.0e-26 122.1 176 39.2
Eucgr.D02282 Eucalyptus grandis HOM05D005367 ORTHO05D006328 5.0e-26 122.1 171 43.9
FAN01G2456 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.0e-26 122.1 171 44.4
Nitab4.5_0008050g0010 Nicotiana tabacum HOM05D005367 ORTHO05D006328 5.0e-26 122.1 169 40.2
PGR031G3282 Punica granatum HOM05D005367 ORTHO05D006328 5.0e-26 122.1 175 40.6
MELO3C021217.2 Cucumis melo HOM05D005367 ORTHO05D006328 1.1e-25 120.9 176 43.8
PSO478G0766 Papaver somniferum HOM05D005367 ORTHO05D006328 1.1e-25 120.9 160 44.4
Lalb_Chr24g0401631 Lupinus albus HOM05D005367 ORTHO05D006328 1.9e-25 120.2 170 40.0
FAN10G0042 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.5e-25 119.8 171 43.9
FvH4_7g14150 Fragaria vesca HOM05D005367 ORTHO05D006328 3.3e-25 119.4 171 43.9
Nitab4.5_0001702g0150 Nicotiana tabacum HOM05D005367 ORTHO05D006328 3.3e-25 119.4 172 39.0
TWI59G0064 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 3.3e-25 119.4 174 43.1
Solyc05g049880.3 Solanum lycopersicum HOM05D005367 ORTHO05D006328 4.3e-25 119.0 171 40.4
Sopen05g028210 Solanum pennellii HOM05D005367 ORTHO05D006328 4.3e-25 119.0 171 40.4
FAN06G0563 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.6e-25 118.6 171 43.3
Glyma.18G231900 Glycine max HOM05D005367 ORTHO05D006328 5.6e-25 118.6 175 41.7
Lalb_Chr01g0011531 Lupinus albus HOM05D005367 ORTHO05D006328 5.6e-25 118.6 170 39.4
ClCG06G003800 Citrullus lanatus HOM05D005367 ORTHO05D006328 7.3e-25 118.2 176 43.2
PGSC0003DMG400021656 Solanum tuberosum HOM05D005367 ORTHO05D006328 7.3e-25 118.2 171 43.3
RcHm_v2.0_Chr1g0377581 Rosa chinensis HOM05D005367 ORTHO05D006328 9.5e-25 117.9 165 43.0
PGR042G0868 Punica granatum HOM05D005367 ORTHO05D006328 1.6e-24 117.1 157 43.9
FAN03G1221 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.1e-24 116.7 171 43.3
Lsat_1_v5_gn_4_36280 Lactuca sativa HOM05D005367 ORTHO05D006328 2.8e-24 116.3 172 40.1
unitig_61.g26388 Utricularia gibba HOM05D005367 ORTHO05D006328 4.7e-24 115.5 156 42.9
Eucgr.E00158 Eucalyptus grandis HOM05D005367 ORTHO05D006328 6.1e-24 115.2 170 41.8
Lj1g0004821 Lotus japonicus HOM05D005367 ORTHO05D006328 8.0e-24 114.8 170 41.2
RcHm_v2.0_Chr1g0354801 Rosa chinensis HOM05D005367 ORTHO05D006328 8.0e-24 114.8 171 40.4
VMungo1383G2792 Vigna mungo HOM05D005367 ORTHO05D006328 1.8e-23 113.6 166 41.0
CsaV3_6G000470 Cucumis sativus L. HOM05D005367 ORTHO05D006328 4.0e-23 112.5 177 40.1
Duzib205G1257 Durio zibethinus HOM05D005367 ORTHO05D006328 5.2e-23 112.1 166 40.4
THA.LOC104801446 Tarenaya hassleriana HOM05D005367 ORTHO05D006328 6.8e-23 111.7 171 36.3
Aqoxy7G00339 Aquilegia oxysepala HOM05D005367 ORTHO05D006328 2.0e-22 110.2 150 42.0
Sp1g00570 Schrenkiella parvula HOM05D005367 ORTHO05D006328 2.0e-22 110.2 172 40.7
Manes.06G148200 Manihot esculenta HOM05D005367 ORTHO05D006328 7.5e-22 108.2 160 40.0
Sed0017642 Sechium edule HOM05D005367 ORTHO05D006328 9.8e-22 107.8 176 42.6
Phvul.008G065800 Phaseolus vulgaris HOM05D005367 ORTHO05D006328 2.2e-21 106.7 159 40.9
FAN10G3657 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.9e-21 106.3 181 40.9
FvH4_7g29600 Fragaria vesca HOM05D005367 ORTHO05D006328 8.3e-21 104.8 176 38.6
FAN10G4254 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.1e-20 104.4 174 39.1
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 1.4e-20 104.0 172 37.8
BolC8t52897H Brassica oleracea HOM05D000368 ORTHO05D000289 1.4e-20 104.0 172 37.8
BraA09t42260Z Brassica rapa HOM05D005367 ORTHO05D006328 2.4e-20 103.2 172 36.6
ECA234G3275 Erigeron canadensis HOM05D005367 ORTHO05D006328 2.4e-20 103.2 163 40.5
Psat3g109400 Pisum sativum HOM05D005367 ORTHO05D006328 7.0e-20 101.7 168 36.9
Thhalv10008538m.g Eutrema salsugineum HOM05D005367 ORTHO05D006328 1.2e-19 100.9 181 34.8
MD01G1202200 Malus domestica HOM05D005367 ORTHO05D006328 1.6e-19 100.5 160 37.5
CANSAT56G3377 Cannabis sativa HOM05D005367 ORTHO05D006328 2.0e-19 100.1 170 35.9
Atru.chr1.441 Acer truncatum HOM05D005367 ORTHO05D006328 2.7e-19 99.8 170 38.2
Ca_07909_v3 Cicer arietinum L. HOM05D005367 ORTHO05D006328 2.7e-19 99.8 169 36.7
DCAR_010300 Daucus carota HOM05D005367 ORTHO05D006328 4.6e-19 99.0 159 37.7
COL.COLO4_14330 Corchorus olitorius HOM05D005367 ORTHO05D006328 7.8e-19 98.2 155 39.4
Ciclev10006075m.g Citrus clementina HOM05D005367 ORTHO05D006328 6.6e-18 95.1 165 36.4
Atru.chr1.440 Acer truncatum HOM05D005367 ORTHO05D006328 1.1e-17 94.4 158 39.9
arahy.Tifrunner.gnm1.ann1.D8DQXR Arachis hypogaea HOM05D005367 ORTHO05D006328 2.5e-17 93.2 167 34.1
QL09p013904 Quercus lobata HOM05D005367 ORTHO05D006328 2.5e-17 93.2 176 36.9
VMungo1383G2823 Vigna mungo HOM05D005367 ORTHO05D006328 2.5e-17 93.2 168 32.7
TPR.G37815 Trifolium pratense HOM05D005367 ORTHO05D006328 3.3e-17 92.8 166 33.7
Medtr7g077380 Medicago truncatula HOM05D005367 ORTHO05D006328 4.3e-17 92.4 155 35.5
arahy.Tifrunner.gnm1.ann1.G5US7K Arachis hypogaea HOM05D005367 ORTHO05D006328 9.5e-17 91.3 167 33.5
Carub.0001s0048 Capsella rubella HOM05D005367 ORTHO05D006328 1.2e-16 90.9 171 34.5
AL1G10610 Arabidopsis lyrata HOM05D005367 ORTHO05D006328 2.8e-16 89.7 174 37.4
HPP92_027620 Vanilla planifolia HOM05D005367 ORTHO05D006328 3.6e-16 89.4 158 34.8
HPP92_022052 Vanilla planifolia HOM05D005367 ORTHO05D006328 8.0e-16 88.2 158 34.8
AT1G01730 Arabidopsis thaliana HOM05D005367 ORTHO05D006328 1.8e-15 87.0 174 33.3
Sabra14G0059900 Salix brachista HOM05D005367 ORTHO05D006328 1.8e-15 87.0 224 31.7
AUR62022549 Chenopodium quinoa HOM05D005367 ORTHO05D006328 3.1e-15 86.3 119 43.7
vmacro06668 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 4.0e-15 85.9 163 33.7
FAN03G1577 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.6e-14 83.2 147 36.1
MBI17_g24635_MAGBIO Magnolia biondii HOM05D005367 ORTHO05D006328 2.6e-14 83.2 201 29.4
AUR62022543 Chenopodium quinoa HOM05D000713 ORTHO05D000547 6.4e-13 78.6 53 69.8
DCAR_000242 Daucus carota HOM05D005367 ORTHO05D006328 4.1e-12 75.9 125 39.2
FAN28G3009 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.6e-11 73.9 73 52.1
FAN06G3705 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.7e-11 73.2 174 35.1
FAN06G4288 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.7e-11 73.2 174 35.1
FAN10G2377 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.7e-11 73.2 88 45.5
FAN10G3879 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.7e-11 73.2 126 41.3
FAN10G0871 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.3e-10 70.9 126 40.5
FAN10G1555 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.0e-10 68.9 125 36.8
Dinv35219 Davidia involucrata HOM05D005367 ORTHO05D006328 8.6e-10 68.2 144 34.7
Potri.015G145000 Populus trichocarpa HOM05D005367 ORTHO05D006328 7.3e-09 65.1 155 30.3
MD01G1056800 Malus domestica HOM05D005367 ORTHO05D006328 4.7e-08 62.4 64 56.2
CDE08G1175 Ceratophyllum demersum HOM05D005367 ORTHO05D006328 6.2e-08 62.0 123 36.6
Aa31LG1G11100 Aethionema arabicum HOM05D005367 ORTHO05D006328 8.1e-08 61.6 50 54.0
Os04g0556900 Oryza sativa ssp. japonica HOM05D005367 ORTHO05D006328 1.1e-07 61.2 166 29.5
Sabra02G0126000 Salix brachista HOM05D005367 ORTHO05D006328 1.1e-07 61.2 52 55.8
Actinidia34119 Actinidia chinensis HOM05D005367 ORTHO05D006328 5.2e-07 58.9 148 31.1
Prupe.2G295600 Prunus persica HOM05D005367 ORTHO05D006328 1.2e-06 57.8 119 34.5
Aa31LG1G11110 Aethionema arabicum HOM05D005367 ORTHO05D006328 5.8e-06 55.5 44 54.5


User provided reference genes

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