Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0003280 Simmondsia chinensis HOM05D006032 ORTHO05D007544 1.4e-142 509.6 261 100.0
AUR62004402 Chenopodium quinoa HOM05D006032 ORTHO05D007544 4.8e-106 388.3 263 76.0
AUR62022608 Chenopodium quinoa HOM05D006032 ORTHO05D007544 1.8e-105 386.3 263 75.7
Atru.chr5.551 Acer truncatum HOM05D006032 ORTHO05D007544 1.0e-100 370.5 266 69.2
Cpa.g.sc184.23 Carica papaya HOM05D006032 ORTHO05D007544 9.6e-99 364.0 264 69.7
Hma1.2p1_2961F.1_g330870 Hydrangea macrophylla HOM05D006032 ORTHO05D007544 9.6e-99 364.0 263 71.9
EL10Ac1g00366 Beta vulgaris HOM05D006032 ORTHO05D007544 2.1e-98 362.8 308 64.0
CSS0027447 Camellia sinensis var. sinensis HOM05D006032 ORTHO05D007544 3.7e-98 362.1 259 70.3
MSTRG.20857 Avicennia marina HOM05D006032 ORTHO05D007544 6.2e-98 361.3 259 70.3
Ciclev10021696m.g Citrus clementina HOM05D006032 ORTHO05D007544 8.1e-98 360.9 264 69.7
Nn1g01650 Nelumbo nucifera HOM05D006032 ORTHO05D007544 2.4e-97 359.4 268 69.8
PGR031G1164 Punica granatum HOM05D006032 ORTHO05D007544 5.3e-97 358.2 266 68.8
Thecc.01G353900 Theobroma cacao HOM05D006032 ORTHO05D007544 1.2e-96 357.1 270 68.1
GSVIVG01027006001 Vitis vinifera HOM05D006032 ORTHO05D007544 2.0e-96 356.3 262 69.5
Cc02_g38440 Coffea canephora HOM05D006032 ORTHO05D007544 3.4e-96 355.5 262 71.0
Glyma.09G255500 Glycine max HOM05D006032 ORTHO05D007544 3.4e-96 355.5 259 68.7
Glyma.18G237400 Glycine max HOM05D006032 ORTHO05D007544 3.4e-96 355.5 259 69.9
COL.COLO4_12764 Corchorus olitorius HOM05D006032 ORTHO05D007544 7.6e-96 354.4 269 70.6
Nitab4.5_0002682g0080 Nicotiana tabacum HOM05D006032 ORTHO05D007544 7.6e-96 354.4 257 69.3
arahy.Tifrunner.gnm1.ann1.S0M071 Arachis hypogaea HOM05D006032 ORTHO05D007544 1.7e-95 353.2 262 66.0
Eucgr.D02319 Eucalyptus grandis HOM05D006032 ORTHO05D007544 1.7e-95 353.2 262 67.9
Nitab4.5_0006802g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 2.2e-95 352.8 257 68.5
arahy.Tifrunner.gnm1.ann1.XQ5AKE Arachis hypogaea HOM05D006032 ORTHO05D007544 2.9e-95 352.4 264 65.5
DCAR_006944 Daucus carota HOM05D006032 ORTHO05D007544 6.5e-95 351.3 259 69.1
CANSAT56G0440 Cannabis sativa HOM05D006032 ORTHO05D007544 1.4e-94 350.1 263 67.7
Haze_15552 Corylus avellana HOM05D006032 ORTHO05D007544 1.4e-94 350.1 261 67.0
Sabra02G0122600 Salix brachista HOM05D006032 ORTHO05D007544 1.4e-94 350.1 266 68.0
CAN.G1091.3 Capsicum annuum HOM05D006032 ORTHO05D007544 4.2e-94 348.6 262 66.8
Manes.01G253200 Manihot esculenta HOM05D006032 ORTHO05D007544 4.2e-94 348.6 268 66.8
THA.LOC104817034 Tarenaya hassleriana HOM05D006032 ORTHO05D007544 4.2e-94 348.6 263 69.6
Lalb_Chr19g0126911 Lupinus albus HOM05D006032 ORTHO05D007544 5.5e-94 348.2 261 66.7
QL04p055082 Quercus lobata HOM05D006032 ORTHO05D007544 9.3e-94 347.4 261 69.7
MELO3C006088.2 Cucumis melo HOM05D006032 ORTHO05D007544 1.6e-93 346.7 271 67.2
SalBow3G2277 Salvia bowleyana HOM05D006032 ORTHO05D007544 2.1e-93 346.3 261 67.4
Sopen09g002430 Solanum pennellii HOM05D006032 ORTHO05D007544 2.7e-93 345.9 262 68.3
BcaB01g02152 Brassica carinata HOM05D006032 ORTHO05D007544 4.6e-93 345.1 261 67.8
TWI59G0434 Tripterygium wilfordii HOM05D006032 ORTHO05D007544 4.6e-93 345.1 265 66.4
TAR629G0912 Trochodendron aralioides HOM05D006032 ORTHO05D007544 4.6e-93 345.1 264 67.4
Thhalv10028885m.g Eutrema salsugineum HOM05D006032 ORTHO05D007544 6.0e-93 344.7 262 67.9
Aqoxy7G00233 Aquilegia oxysepala HOM05D006032 ORTHO05D007544 7.9e-93 344.4 269 67.7
CsaV3_3G008690 Cucumis sativus L. HOM05D006032 ORTHO05D007544 7.9e-93 344.4 268 67.2
HanXRQChr06g0170291 Helianthus annuus HOM05D006032 ORTHO05D007544 7.9e-93 344.4 257 68.1
AT4G01310 Arabidopsis thaliana HOM05D006032 ORTHO05D007544 1.3e-92 343.6 263 66.5
BcaB01g02282 Brassica carinata HOM05D006032 ORTHO05D007544 1.8e-92 343.2 261 68.2
PGSC0003DMG400001748 Solanum tuberosum HOM05D006032 ORTHO05D007544 1.8e-92 343.2 258 67.8
Cfa003882 Carpinus fangiana HOM05D006032 ORTHO05D007544 2.3e-92 342.8 261 65.5
Carub.0006s3637 Capsella rubella HOM05D006032 ORTHO05D007544 3.0e-92 342.4 261 66.7
AL6G52090 Arabidopsis lyrata HOM05D006032 ORTHO05D007544 3.9e-92 342.0 261 66.7
BcaC01g06855 Brassica carinata HOM05D006032 ORTHO05D007544 5.1e-92 341.7 261 67.0
BolC3t16171H Brassica oleracea HOM05D006032 ORTHO05D007544 5.1e-92 341.7 261 67.0
CiPaw.01G065600 Carya illinoinensis HOM05D006032 ORTHO05D007544 8.7e-92 340.9 255 66.7
Potri.002G154600 Populus trichocarpa HOM05D006032 ORTHO05D007544 8.7e-92 340.9 264 66.7
VMungo1383G0296 Vigna mungo HOM05D006032 ORTHO05D007544 1.1e-91 340.5 263 67.7
C03p38990 Brassica napus HOM05D006032 ORTHO05D007544 1.5e-91 340.1 261 67.0
ClCG05G001320 Citrullus lanatus HOM05D006032 ORTHO05D007544 3.3e-91 339.0 266 65.8
Gohir.D07G146100 Gossypium hirsutum HOM05D006032 ORTHO05D007544 3.3e-91 339.0 263 66.9
BcaC04g24141 Brassica carinata HOM05D006032 ORTHO05D007544 4.3e-91 338.6 263 67.7
ECA236G4677 Erigeron canadensis HOM05D006032 ORTHO05D007544 4.3e-91 338.6 258 64.7
Migut.B01790 Erythranthe guttata HOM05D006032 ORTHO05D007544 4.3e-91 338.6 261 65.5
Gorai.001G158300 Gossypium raimondii HOM05D006032 ORTHO05D007544 4.3e-91 338.6 263 66.9
FAN06G2046 Fragaria x ananassa HOM05D006032 ORTHO05D007544 5.7e-91 338.2 264 67.0
FAN06G3864 Fragaria x ananassa HOM05D006032 ORTHO05D007544 5.7e-91 338.2 264 67.0
Gohir.A07G140700 Gossypium hirsutum HOM05D006032 ORTHO05D007544 5.7e-91 338.2 269 66.2
Lsat_1_v5_gn_7_3801 Lactuca sativa HOM05D006032 ORTHO05D007544 5.7e-91 338.2 259 66.0
Phvul.008G059200 Phaseolus vulgaris HOM05D006032 ORTHO05D007544 7.4e-91 337.8 262 66.4
Oeu054338.1 Olea europaea HOM05D006032 ORTHO05D007544 9.6e-91 337.4 259 66.4
FAN03G1341 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.3e-90 337.0 264 66.7
Prupe.2G175800 Prunus persica HOM05D006032 ORTHO05D007544 1.3e-90 337.0 269 65.8
FvH4_7g15110 Fragaria vesca HOM05D006032 ORTHO05D007544 1.6e-90 336.7 264 66.7
RcHm_v2.0_Chr1g0357301 Rosa chinensis HOM05D006032 ORTHO05D007544 2.8e-90 335.9 264 66.3
Sp6g00830 Schrenkiella parvula HOM05D006032 ORTHO05D007544 3.7e-90 335.5 262 66.0
CARHR249010 Cardamine hirsuta HOM05D006032 ORTHO05D007544 4.8e-90 335.1 265 65.7
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 6.3e-90 334.7 263 66.5
Lj7A509T108 Lonicera japonica HOM05D006032 ORTHO05D007544 8.2e-90 334.3 260 63.5
FAN10G0977 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.1e-89 334.0 264 66.3
FAN10G2244 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.1e-89 334.0 264 66.3
PSO782G5129 Papaver somniferum HOM05D006032 ORTHO05D007544 1.1e-89 334.0 271 63.8
Ca_00819_v3 Cicer arietinum L. HOM05D006032 ORTHO05D007544 1.4e-89 333.6 260 65.8
Rhsim12G0138500 Rhododendron simsii HOM05D006032 ORTHO05D007544 1.8e-89 333.2 262 66.4
Lj4g0026145 Lotus japonicus HOM05D006032 ORTHO05D007544 5.3e-89 331.6 256 65.6
Medtr7g078800 Medicago truncatula HOM05D006032 ORTHO05D007544 5.3e-89 331.6 258 67.1
Sed0022476 Sechium edule HOM05D006032 ORTHO05D007544 5.3e-89 331.6 267 64.4
PSO478G3538 Papaver somniferum HOM05D006032 ORTHO05D007544 2.6e-88 329.3 269 63.2
MD01G1069800 Malus domestica HOM05D006032 ORTHO05D007544 7.6e-88 327.8 263 65.8
Hund27251 Selenicereus undatus HOM05D006032 ORTHO05D007544 1.0e-87 327.4 234 70.1
SGA_v2.0_scaffold95G28814 Striga asiatica HOM05D006032 ORTHO05D007544 1.0e-87 327.4 273 63.7
MD07G1132700 Malus domestica HOM05D006032 ORTHO05D007544 8.4e-87 324.3 263 65.8
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 1.4e-86 323.6 240 69.6
CDE04G3178 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 4.2e-86 322.0 267 63.3
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 5.5e-86 321.6 252 67.9
CDE12G0723 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 7.2e-86 321.2 225 72.0
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 1.6e-85 320.1 252 67.9
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 3.9e-84 315.5 248 65.7
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 3.9e-84 315.5 248 65.7
Psat3g107160 Pisum sativum HOM05D006032 ORTHO05D007544 6.7e-84 314.7 262 63.4
TPR.G22296 Trifolium pratense HOM05D006032 ORTHO05D007544 8.7e-84 314.3 262 63.7
ATR0661G584 Amborella trichopoda HOM05D006032 ORTHO05D007544 7.4e-83 311.2 259 61.4
HPP92_025634 Vanilla planifolia HOM05D006032 ORTHO05D007544 3.7e-82 308.9 245 64.1
unitig_22.g5344 Utricularia gibba HOM05D003213 ORTHO05D003693 7.7e-80 301.2 206 69.9
Potri.014G089100 Populus trichocarpa HOM05D006032 ORTHO05D007544 2.7e-77 292.7 261 59.4
Peaxi162Scf00815g00338 Petunia axillaris HOM05D006032 ORTHO05D007544 7.9e-77 291.2 179 78.8
Os03g0125000 Oryza sativa ssp. japonica HOM05D006032 ORTHO05D007544 3.9e-76 288.9 216 63.4
Zm00001eb001840 Zea mays HOM05D006032 ORTHO05D007544 1.1e-75 287.3 214 64.0
vmacro20901 Vaccinium macrocarpon HOM05D006032 ORTHO05D007544 7.2e-70 268.1 263 57.0
Mapoly0001s0334 Marchantia polymorpha HOM05D006032 ORTHO05D007544 2.0e-67 260.0 236 57.2
Dinv32511 Davidia involucrata HOM05D006032 ORTHO05D007544 7.4e-67 258.1 229 57.6
Pp3c1_25850 Physcomitrium patens HOM05D006032 ORTHO05D007544 2.8e-66 256.1 247 52.2
A03p31970 Brassica napus HOM05D006032 ORTHO05D007544 4.8e-66 255.4 197 66.0
BraA03t12369Z Brassica rapa HOM05D006032 ORTHO05D007544 4.8e-66 255.4 197 66.0
FAN01G2970 Fragaria x ananassa HOM05D006032 ORTHO05D007544 8.2e-66 254.6 195 67.2
AagrBONN_evm.TU.Sc2ySwM_228.1445 Anthoceros agrestis HOM05D006032 ORTHO05D007544 5.3e-65 251.9 203 57.6
Pp3c2_17110 Physcomitrium patens HOM05D006032 ORTHO05D007544 7.0e-65 251.5 217 53.9
MBI04_g41504_MAGBIO Magnolia biondii HOM05D006032 ORTHO05D007544 2.9e-63 246.1 240 57.1
SMO358G0099 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 2.7e-61 239.6 177 63.3
Solyc09g007560.4 Solanum lycopersicum HOM05D006032 ORTHO05D007544 1.1e-54 217.6 176 65.9
SEGI_08351 Sequoiadendron giganteum HOM05D006032 ORTHO05D007544 1.8e-52 210.3 141 69.5
MSTRG.17292 Avicennia marina HOM05D006032 ORTHO05D007544 6.3e-50 201.8 131 75.6
Haze_27649 Corylus avellana HOM05D006032 ORTHO05D007544 4.9e-42 175.6 153 52.9
Cfa021143 Carpinus fangiana HOM05D006032 ORTHO05D001488 1.3e-39 167.5 165 47.3
COL.COLO4_27391 Corchorus olitorius HOM05D006032 ORTHO05D007544 3.3e-38 162.9 114 73.7
C02p38190 Brassica napus HOM05D006032 ORTHO05D007544 8.0e-37 158.3 260 41.2
BolC2t09834H Brassica oleracea HOM05D006032 ORTHO05D007544 8.0e-37 158.3 260 41.2
BcaC03g16053 Brassica carinata HOM05D006032 ORTHO05D007544 2.3e-36 156.8 260 40.8
Rhsim01G0165400 Rhododendron simsii HOM05D006032 ORTHO05D007544 6.8e-36 155.2 160 58.1
Sabra14G0064700 Salix brachista HOM05D006032 ORTHO05D007544 4.9e-34 149.1 112 65.2
Actinidia02824 Actinidia chinensis HOM05D006032 ORTHO05D007544 6.2e-29 132.1 88 76.1
SMO196G0051 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 2.6e-27 126.7 173 39.9
Nitab4.5_0000681g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.2e-24 117.9 76 77.6
Sc24g0002240 Simmondsia chinensis HOM05D006032 ORTHO05D007544 4.3e-22 109.4 62 91.9
Nitab4.5_0000681g0060 Nicotiana tabacum HOM05D006032 ORTHO05D007544 2.3e-20 103.6 70 71.4
VMungo1309G2152 Vigna mungo HOM05D006032 ORTHO05D007544 1.2e-19 101.3 70 70.0
Cfa024600 Carpinus fangiana HOM05D006032 ORTHO05D122942 3.9e-15 86.3 169 29.0
VMungo0647G0507 Vigna mungo HOM05D006032 ORTHO05D007227 3.9e-15 86.3 59 71.2
Psat2g092280 Pisum sativum HOM05D006032 ORTHO05D007544 1.2e-11 74.7 60 61.7
Dinv43855 Davidia involucrata HOM05D006032 ORTHO05D007544 6.4e-10 68.9 39 82.1
Rhsim12G0138600 Rhododendron simsii HOM05D006032 ORTHO05D007544 7.8e-08 62.0 88 48.9
unitig_8.g3788 Utricularia gibba HOM05D006032 ORTHO05D007544 4.3e-06 56.2 104 34.6


User provided reference genes

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