Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0003200 Simmondsia chinensis HOM05D006382 ORTHO05D008938 3.1e-303 1044.3 504 100.0
GSVIVG01026968001 Vitis vinifera HOM05D006382 ORTHO05D008938 8.1e-219 763.8 471 75.4
Hma1.2p1_0335F.1_g128860 Hydrangea macrophylla HOM05D006382 ORTHO05D008938 5.4e-215 751.1 465 74.8
EL10Ac1g00353 Beta vulgaris HOM05D006382 ORTHO05D008938 2.7e-214 748.8 519 70.1
Cfa003871 Carpinus fangiana HOM05D006382 ORTHO05D008938 7.8e-214 747.3 465 74.4
Prupe.2G177700 Prunus persica HOM05D006382 ORTHO05D008938 7.8e-214 747.3 465 74.0
Dinv43864 Davidia involucrata HOM05D006382 ORTHO05D008938 3.0e-213 745.3 490 71.8
MD01G1071500 Malus domestica HOM05D006382 ORTHO05D008938 3.9e-213 745.0 465 74.0
RcHm_v2.0_Chr1g0357731 Rosa chinensis HOM05D006382 ORTHO05D008938 2.5e-212 742.3 500 71.0
Thecc.01G352300 Theobroma cacao HOM05D006382 ORTHO05D008938 3.3e-212 741.9 490 71.0
Actinidia20164 Actinidia chinensis HOM05D006382 ORTHO05D008938 5.6e-212 741.1 476 73.1
CiPaw.01G067600 Carya illinoinensis HOM05D006382 ORTHO05D008938 5.6e-212 741.1 466 73.4
Atru.chr5.564 Acer truncatum HOM05D006382 ORTHO05D008938 9.5e-212 740.3 472 73.7
TWI59G0052 Tripterygium wilfordii HOM05D006382 ORTHO05D008938 2.8e-211 738.8 502 70.5
CSS0031254 Camellia sinensis var. sinensis HOM05D006382 ORTHO05D008938 8.1e-211 737.3 527 67.0
AUR62004414 Chenopodium quinoa HOM05D006382 ORTHO05D008938 8.1e-211 737.3 520 69.0
FAN01G1899 Fragaria x ananassa HOM05D006382 ORTHO05D008938 1.1e-210 736.9 465 73.8
vmacro13226 Vaccinium macrocarpon HOM05D006382 ORTHO05D008938 1.1e-210 736.9 539 65.7
Cpa.g.sc11.72 Carica papaya HOM05D006382 ORTHO05D008938 2.3e-210 735.7 466 74.2
Ciclev10019743m.g Citrus clementina HOM05D006382 ORTHO05D008938 5.2e-210 734.6 503 69.6
FvH4_7g15410 Fragaria vesca HOM05D006382 ORTHO05D008938 5.2e-210 734.6 465 73.8
Duzib133G1372 Durio zibethinus HOM05D006382 ORTHO05D008938 6.8e-210 734.2 498 70.5
Rhsim07G0010300 Rhododendron simsii HOM05D006382 ORTHO05D008938 6.8e-210 734.2 500 69.6
Potri.002G164700 Populus trichocarpa HOM05D006382 ORTHO05D008938 1.2e-209 733.4 461 72.5
Sed0009049 Sechium edule HOM05D006382 ORTHO05D008938 4.4e-209 731.5 496 70.6
Eucgr.D02325 Eucalyptus grandis HOM05D006382 ORTHO05D008938 1.7e-208 729.6 492 70.1
Gohir.A11G092400 Gossypium hirsutum HOM05D006382 ORTHO05D008938 1.1e-207 726.9 502 69.7
QL04p055600 Quercus lobata HOM05D006382 ORTHO05D008938 1.1e-207 726.9 485 71.1
Gorai.007G103500 Gossypium raimondii HOM05D006382 ORTHO05D008938 1.4e-207 726.5 479 72.0
MELO3C006077.2 Cucumis melo HOM05D006382 ORTHO05D008938 4.1e-207 724.9 493 69.6
CSS0000318 Camellia sinensis var. sinensis HOM05D006382 ORTHO05D008938 7.1e-207 724.2 499 69.1
CsaV3_3G008570 Cucumis sativus L. HOM05D006382 ORTHO05D008938 7.1e-207 724.2 481 71.5
HanXRQChr17g0562131 Helianthus annuus HOM05D006382 ORTHO05D008938 2.1e-206 722.6 462 72.9
Nitab4.5_0000915g0130 Nicotiana tabacum HOM05D006382 ORTHO05D008938 2.1e-206 722.6 500 68.6
DCAR_005361 Daucus carota HOM05D006382 ORTHO05D008938 1.3e-205 719.9 461 72.0
Lalb_Chr19g0126881 Lupinus albus HOM05D006382 ORTHO05D008938 1.3e-205 719.9 494 69.0
SGA_v2.0_scaffold4G02278 Striga asiatica HOM05D006382 ORTHO05D008938 1.3e-205 719.9 465 71.6
Atru.BG.55.p Acer truncatum HOM05D006382 ORTHO05D008938 2.3e-205 719.2 452 75.0
Lj1g0001840 Lotus japonicus HOM05D006382 ORTHO05D008938 3.0e-205 718.8 496 69.2
Sp5g01870 Schrenkiella parvula HOM05D006382 ORTHO05D008938 3.0e-205 718.8 466 73.0
Thhalv10005890m.g Eutrema salsugineum HOM05D006382 ORTHO05D008938 5.1e-205 718.0 482 72.2
ClCG05G001220 Citrullus lanatus HOM05D006382 ORTHO05D008938 6.6e-205 717.6 492 70.3
CANSAT56G1207 Cannabis sativa HOM05D006382 ORTHO05D008938 8.6e-205 717.2 471 70.5
Aqoxy7G00230 Aquilegia oxysepala HOM05D006382 ORTHO05D008938 1.5e-204 716.5 454 73.6
FAN06G2792 Fragaria x ananassa HOM05D006382 ORTHO05D008938 1.9e-204 716.1 494 69.0
VMungo1383G3370 Vigna mungo HOM05D006382 ORTHO05D008938 1.9e-204 716.1 497 68.6
THA.LOC104827604 Tarenaya hassleriana HOM05D006382 ORTHO05D008938 2.5e-204 715.7 466 71.0
AL5G43900 Arabidopsis lyrata HOM05D006382 ORTHO05D008938 4.3e-204 714.9 469 71.6
Nn1g01689 Nelumbo nucifera HOM05D006382 ORTHO05D008938 4.3e-204 714.9 472 71.0
Carub.0005s2823 Capsella rubella HOM05D006382 ORTHO05D008938 2.1e-203 712.6 466 71.7
MSTRG.17299 Avicennia marina HOM05D006382 ORTHO05D008938 3.6e-203 711.8 492 67.7
FAN03G1976 Fragaria x ananassa HOM05D006382 ORTHO05D008938 3.6e-203 711.8 498 68.1
Oeu063675.1 Olea europaea HOM05D006382 ORTHO05D008938 1.4e-202 709.9 504 66.9
PSO266G0056 Papaver somniferum HOM05D006382 ORTHO05D008938 1.4e-202 709.9 481 70.7
Phvul.008G058200 Phaseolus vulgaris HOM05D006382 ORTHO05D008938 2.4e-202 709.1 465 71.0
Sabra02G0146800 Salix brachista HOM05D006382 ORTHO05D008938 2.4e-202 709.1 477 69.0
SalBow3G4256 Salvia bowleyana HOM05D006382 ORTHO05D008938 2.4e-202 709.1 504 67.7
Haze_15566 Corylus avellana HOM05D006382 ORTHO05D008938 6.8e-202 707.6 492 68.9
Sopen01g038910 Solanum pennellii HOM05D006382 ORTHO05D008938 1.5e-201 706.4 490 69.0
BraA07t30197Z Brassica rapa HOM05D006382 ORTHO05D008938 2.6e-201 705.7 499 69.1
A07p25560 Brassica napus HOM05D006382 ORTHO05D008938 7.6e-201 704.1 499 68.9
Medtr7g079030 Medicago truncatula HOM05D006382 ORTHO05D008938 7.6e-201 704.1 462 70.8
BolC6t37923H Brassica oleracea HOM05D006382 ORTHO05D008938 9.9e-201 703.7 464 72.0
PGSC0003DMG400000065 Solanum tuberosum HOM05D006382 ORTHO05D008938 1.3e-200 703.4 504 67.7
Solyc01g095120.3 Solanum lycopersicum HOM05D006382 ORTHO05D008938 2.2e-200 702.6 496 68.1
C06p27550 Brassica napus HOM05D006382 ORTHO05D008938 2.9e-200 702.2 464 71.8
CARHR171860 Cardamine hirsuta HOM05D006382 ORTHO05D008938 2.9e-200 702.2 478 69.5
PSO384G0256 Papaver somniferum HOM05D006382 ORTHO05D008938 2.9e-200 702.2 484 69.0
BcaB02g07372 Brassica carinata HOM05D006382 ORTHO05D008938 3.8e-200 701.8 465 71.8
Glyma.18G238400 Glycine max HOM05D006382 ORTHO05D008938 4.9e-200 701.4 465 70.3
HPP92_008800 Vanilla planifolia HOM05D006382 ORTHO05D008938 4.9e-200 701.4 451 71.2
AT3G61540 Arabidopsis thaliana HOM05D006382 ORTHO05D008938 2.4e-199 699.1 477 70.0
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 4.2e-199 698.4 498 66.9
Lj9C589T7 Lonicera japonica HOM05D006382 ORTHO05D008938 5.4e-199 698.0 508 65.6
BcaC08g45134 Brassica carinata HOM05D006382 ORTHO05D008938 1.2e-198 696.8 495 67.5
TPR.G35789 Trifolium pratense HOM05D006382 ORTHO05D008938 1.6e-198 696.4 503 67.0
Cc02_g38570 Coffea canephora HOM05D006382 ORTHO05D008938 4.6e-198 694.9 499 67.7
Psat3g105480 Pisum sativum HOM05D006382 ORTHO05D008938 4.6e-198 694.9 478 68.8
Peaxi162Scf00020g01516 Petunia axillaris HOM05D006382 ORTHO05D008938 1.0e-197 693.7 493 66.7
Glyma.09G254600 Glycine max HOM05D006382 ORTHO05D008938 1.3e-197 693.3 465 69.7
FAN06G0271 Fragaria x ananassa HOM05D006382 ORTHO05D008938 5.1e-197 691.4 465 70.1
arahy.Tifrunner.gnm1.ann1.FF5BCH Arachis hypogaea HOM05D006382 ORTHO05D008938 1.5e-196 689.9 472 69.1
arahy.Tifrunner.gnm1.ann1.Z348XU Arachis hypogaea HOM05D006382 ORTHO05D008938 1.9e-196 689.5 472 69.1
ECA234G1133 Erigeron canadensis HOM05D006382 ORTHO05D008938 1.9e-196 689.5 452 69.9
Nitab4.5_0010695g0050 Nicotiana tabacum HOM05D006382 ORTHO05D008938 1.3e-195 686.8 522 65.3
MBI06_g33533_MAGBIO Magnolia biondii HOM05D006382 ORTHO05D008938 8.1e-195 684.1 452 70.8
Ca_07943_v3 Cicer arietinum L. HOM05D006382 ORTHO05D008938 4.0e-194 681.8 450 70.9
CDE10G0280 Ceratophyllum demersum HOM05D006382 ORTHO05D008938 3.8e-192 675.2 454 68.5
ATR0721G029 Amborella trichopoda HOM05D006382 ORTHO05D008938 2.7e-190 669.1 452 69.7
Lsat_1_v5_gn_4_35160 Lactuca sativa HOM05D006382 ORTHO05D008938 2.7e-190 669.1 502 65.5
AUR62022620 Chenopodium quinoa HOM05D006382 ORTHO05D008938 1.1e-183 647.1 499 63.9
CANSAT56G3955 Cannabis sativa HOM05D006382 ORTHO05D008938 1.3e-181 640.2 471 65.6
Pp3c20_22770 Physcomitrium patens HOM05D006382 ORTHO05D008938 2.8e-179 632.5 449 65.0
Aa31LG10G15440 Aethionema arabicum HOM05D006382 ORTHO05D008938 1.1e-178 630.6 415 70.4
unitig_747.g21323 Utricularia gibba HOM05D000887 ORTHO05D000908 1.8e-173 613.2 504 60.7
Ah.05g180140 Amaranthus hybridus HOM05D006382 ORTHO05D008938 3.9e-173 612.1 474 63.1
Mapoly0179s0013 Marchantia polymorpha HOM05D006382 ORTHO05D008938 3.7e-171 605.5 468 62.0
SMO134G0292 Selaginella moellendorffii HOM05D006382 ORTHO05D008938 1.2e-169 600.5 447 62.6
COL.COLO4_12779 Corchorus olitorius HOM05D006382 ORTHO05D008938 9.3e-167 590.9 464 63.6
CAN.G78.131 Capsicum annuum HOM05D006382 ORTHO05D008938 1.4e-157 560.5 366 70.8
Gohir.D11G097200 Gossypium hirsutum HOM05D006382 ORTHO05D008938 1.4e-157 560.5 373 71.0
Manes.05G029200 Manihot esculenta HOM05D006382 ORTHO05D008938 3.0e-157 559.3 362 71.3
Migut.B01800 Erythranthe guttata HOM05D006382 ORTHO05D008938 5.1e-157 558.5 465 59.8
Oeu063676.1 Olea europaea HOM05D006382 ORTHO05D008938 8.8e-133 478.0 483 52.6
TAR629G1903 Trochodendron aralioides HOM05D006382 ORTHO05D008938 6.3e-131 471.9 307 71.0
Cre03.g193700 Chlamydomonas reinhardtii HOM05D006382 ORTHO05D008938 2.8e-126 456.4 452 50.0
MCO14G065 Micromonas commoda HOM05D006382 ORTHO05D008938 3.3e-119 433.0 476 49.4
Potri.014G090601 Populus trichocarpa HOM05D006382 ORTHO05D008938 1.8e-117 427.2 306 68.6
Zm00001eb375690 Zea mays HOM05D006382 ORTHO05D008938 1.6e-110 404.1 308 65.3
PRCOL_00004635 Prasinoderma coloniale HOM05D006382 ORTHO05D008938 2.0e-105 387.1 481 45.9
Cfa025852 Carpinus fangiana HOM05D006382 ORTHO05D008938 2.3e-88 330.5 453 41.1
SMO139G0016 Selaginella moellendorffii HOM05D006382 ORTHO05D376983 1.2e-41 175.3 226 44.7
Os06g0163600 Oryza sativa ssp. japonica HOM05D006382 ORTHO05D008938 4.8e-38 163.3 100 74.0
Hma1.2p1_0036F.1_g022810 Hydrangea macrophylla HOM05D006382 ORTHO05D228417 4.7e-33 146.7 96 71.9
Hma1.2p1_0036F.1_g022815 Hydrangea macrophylla HOM05D006382 ORTHO05D228242 4.7e-33 146.7 96 71.9
Hma1.2p1_0515F.1_g170355 Hydrangea macrophylla HOM05D006382 ORTHO05D228454 4.7e-33 146.7 96 71.9
Hma1.2p1_1019F.1_g248455 Hydrangea macrophylla HOM05D006382 ORTHO05D228422 4.7e-33 146.7 96 71.9
SMO165G0168 Selaginella moellendorffii HOM05D006382 ORTHO05D374182 1.8e-24 118.2 277 28.9
BolC4t24936H Brassica oleracea HOM05D006382 ORTHO05D024383 5.0e-19 100.1 78 61.5
C04p33670 Brassica napus HOM05D006382 ORTHO05D024383 2.2e-14 84.7 59 67.8
Ah.05g180150 Amaranthus hybridus HOM05D006382 ORTHO05D060446 8.6e-11 72.8 110 41.8
BcaB04g18088 Brassica carinata HOM05D006382 ORTHO05D024383 1.4e-08 65.5 43 74.4
CsaV3_3G008600 Cucumis sativus L. HOM05D006382 ORTHO05D172594 3.4e-07 60.8 38 68.4


User provided reference genes

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