Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 1.0e-211 740.0 408 100.0
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 6.5e-126 454.9 422 65.2
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.0e-123 447.6 400 63.2
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 1.5e-122 443.7 407 58.2
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 1.5e-122 443.7 418 59.8
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 5.7e-122 441.8 408 61.5
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 1.7e-121 440.3 401 61.8
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 2.2e-121 439.9 412 60.2
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 8.2e-121 438.0 412 60.2
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 3.1e-120 436.0 409 63.8
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 4.1e-120 435.6 414 59.4
AUR62004420 Chenopodium quinoa HOM05D005133 ORTHO05D006685 5.3e-120 435.3 391 61.9
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 9.1e-120 434.5 412 59.2
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 1.2e-119 434.1 414 60.1
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 2.9e-118 429.5 414 60.1
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 2.9e-118 429.5 414 60.1
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 1.4e-117 427.2 401 60.1
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 1.9e-117 426.8 406 60.6
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 3.2e-117 426.0 409 58.9
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 7.2e-117 424.9 397 58.7
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 1.0e-115 421.0 413 58.1
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 1.4e-115 420.6 399 60.2
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 3.0e-115 419.5 403 60.0
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 3.9e-115 419.1 410 59.0
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 5.1e-115 418.7 410 57.3
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 1.5e-114 417.2 406 59.1
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.5e-114 417.2 403 59.6
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 2.8e-113 412.9 412 58.3
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 1.1e-112 411.0 412 57.5
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 1.1e-112 411.0 410 57.6
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 1.4e-112 410.6 419 57.5
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.4e-112 410.6 403 58.8
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 2.4e-112 409.8 413 56.4
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 5.3e-112 408.7 417 56.6
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 9.1e-112 407.9 400 58.0
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 1.2e-111 407.5 410 57.3
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 1.2e-111 407.5 432 56.5
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 2.6e-111 406.4 406 57.6
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 4.5e-111 405.6 401 57.6
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 4.5e-111 405.6 410 57.3
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 7.7e-111 404.8 430 55.8
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 1.7e-110 403.7 400 57.5
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 6.5e-110 401.7 428 55.6
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 1.1e-109 401.0 399 57.1
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 2.5e-109 399.8 398 57.3
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 1.6e-108 397.1 412 56.1
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 3.6e-108 396.0 390 57.7
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 4.7e-108 395.6 414 56.3
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 1.4e-107 394.0 409 57.2
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 2.3e-107 393.3 400 55.8
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 3.0e-107 392.9 415 56.4
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 3.9e-107 392.5 414 55.8
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 3.9e-107 392.5 410 55.9
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 5.2e-107 392.1 395 57.5
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 1.1e-106 391.0 415 55.2
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 9.7e-106 387.9 397 55.4
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 2.8e-105 386.3 408 53.2
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 4.8e-105 385.6 382 57.3
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 6.3e-105 385.2 399 58.6
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 6.3e-105 385.2 410 53.9
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 1.8e-104 383.6 415 54.2
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 4.1e-104 382.5 413 55.9
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.2e-103 380.9 444 51.8
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 3.5e-103 379.4 449 51.0
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 5.9e-103 378.6 393 55.7
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 7.7e-103 378.3 392 55.1
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.0e-102 377.9 393 55.7
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 1.7e-102 377.1 406 53.7
Nitab4.5_0000915g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 2.9e-102 376.3 385 57.7
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 5.0e-102 375.6 407 52.8
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 2.7e-100 369.8 411 51.8
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 4.0e-99 365.9 402 54.0
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 5.2e-99 365.5 412 53.6
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 6.8e-99 365.2 381 53.8
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 2.0e-98 363.6 361 57.9
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 2.8e-97 359.8 512 45.9
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 6.3e-97 358.6 409 55.5
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 1.4e-96 357.5 336 60.1
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 1.4e-96 357.5 356 57.9
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 3.1e-96 356.3 412 50.7
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 1.6e-95 354.0 405 51.1
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 2.0e-95 353.6 411 53.3
Gohir.A07G140500 Gossypium hirsutum HOM05D005133 ORTHO05D006685 1.0e-94 351.3 379 57.3
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 2.9e-94 349.7 410 52.9
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 8.5e-94 348.2 405 50.1
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 1.1e-93 347.8 404 50.5
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 3.2e-93 346.3 354 58.2
CANSAT01G0674 Cannabis sativa HOM05D005133 ORTHO05D006685 2.1e-92 343.6 369 55.6
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 6.1e-92 342.0 405 48.6
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 4.4e-90 335.9 391 49.9
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 4.4e-90 335.9 405 48.1
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 8.3e-89 331.6 407 47.9
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 1.8e-88 330.5 396 49.2
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 9.1e-88 328.2 407 47.4
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 9.1e-88 328.2 405 48.1
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 2.7e-87 326.6 439 46.7
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 4.5e-87 325.9 414 46.4
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 1.7e-86 323.9 405 49.1
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 5.0e-86 322.4 405 48.1
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 1.5e-85 320.9 501 42.7
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 2.3e-83 313.5 424 45.5
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 1.2e-82 311.2 404 46.3
ATR0626G352 Amborella trichopoda HOM05D005133 ORTHO05D006685 4.4e-82 309.3 407 47.2
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 2.8e-76 290.0 385 50.1
vmacro13220 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 2.8e-76 290.0 333 54.7
Ah.05g180080 Amaranthus hybridus HOM05D005133 ORTHO05D006685 1.3e-73 281.2 407 48.2
AT2G46200 Arabidopsis thaliana HOM05D005133 ORTHO05D006685 1.4e-72 277.7 370 47.0
MBI16_g41624_MAGBIO Magnolia biondii HOM05D005133 ORTHO05D006685 7.0e-72 275.4 408 44.4
RcHm_v2.0_Chr1g0358091 Rosa chinensis HOM05D005133 ORTHO05D006685 7.1e-64 248.8 302 51.7
Pp3c4_26280 Physcomitrium patens HOM05D005133 ORTHO05D006685 7.1e-56 222.2 316 43.7
HPP92_023966 Vanilla planifolia HOM05D005133 ORTHO05D006685 1.6e-55 221.1 308 47.1
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 7.8e-55 218.8 365 44.1
arahy.Tifrunner.gnm1.ann1.Z00T6Z Arachis hypogaea HOM05D005133 ORTHO05D006685 1.3e-54 218.0 226 54.9
PSO384G2230 Papaver somniferum HOM05D005133 ORTHO05D006685 1.3e-54 218.0 243 49.0
vmacro22850 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 8.6e-54 215.3 351 42.2
CDE09G0708 Ceratophyllum demersum HOM05D005133 ORTHO05D006685 5.8e-50 202.6 317 46.7
Mapoly0001s0322 Marchantia polymorpha HOM05D005133 ORTHO05D006685 1.2e-47 194.9 428 35.5
PSO478G1127 Papaver somniferum HOM05D005133 ORTHO05D006685 3.5e-47 193.4 222 54.1
AagrBONN_evm.TU.Sc2ySwM_344.4499 Anthoceros agrestis HOM05D005133 ORTHO05D006685 1.4e-43 181.4 412 35.7
SMO239G0112 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 1.5e-34 151.4 354 35.0
Zm00001eb201120 Zea mays HOM05D005133 ORTHO05D006685 5.6e-29 132.9 142 51.4
Zm00001eb407270 Zea mays HOM05D005133 ORTHO05D006685 5.6e-29 132.9 142 51.4
Gohir.A03G093200 Gossypium hirsutum HOM05D005133 ORTHO05D006685 9.6e-29 132.1 167 49.7
Glyma.11G125567 Glycine max HOM05D005133 ORTHO05D006685 1.4e-27 128.3 130 53.8
FAN03G0151 Fragaria x ananassa HOM05D005133 ORTHO05D006685 3.1e-27 127.1 89 67.4
SHI13349 Sapria himalayana HOM05D005133 ORTHO05D006685 2.5e-24 117.5 141 47.5
CBR_g45167 Chara braunii HOM05D005133 ORTHO05D006685 4.8e-20 103.2 274 31.8
vmacro01745 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 5.8e-18 96.3 147 43.5
Rhsim01G0168000 Rhododendron simsii HOM05D005133 ORTHO05D006685 1.3e-17 95.1 72 75.0
AUR62025074 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.0e-14 85.5 65 67.7
SMO117G0103 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 3.0e-14 84.0 154 41.6
RcHm_v2.0_Chr1g0358101 Rosa chinensis HOM05D004139 ORTHO05D004873 5.7e-13 79.7 120 43.3
HanXRQChr04g0107751 Helianthus annuus HOM05D005133 ORTHO05D006685 9.7e-13 79.0 98 50.0
SMO114G0022 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 1.6e-12 78.2 105 44.8
C04p01870 Brassica napus HOM05D005133 ORTHO05D006685 2.0e-10 71.2 39 74.4
FvH4_2g33570 Fragaria vesca HOM05D000073 ORTHO05D015767 1.8e-06 58.2 85 47.1


User provided reference genes

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