Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0002860 Simmondsia chinensis HOM05D001772 ORTHO05D005958 9.0e-69 263.5 133 100.0
Sc23g0002200 Simmondsia chinensis HOM05D001772 ORTHO05D005958 6.3e-22 107.8 115 50.4
Ah.05g179770 Amaranthus hybridus HOM05D001772 ORTHO05D005958 2.7e-20 102.4 100 56.0
AUR62004468 Chenopodium quinoa HOM05D001772 ORTHO05D005958 1.1e-18 97.1 100 53.0
AUR62023482 Chenopodium quinoa HOM05D001772 ORTHO05D005958 3.3e-18 95.5 100 52.0
EL10Ac1g00296 Beta vulgaris HOM05D001772 ORTHO05D005958 1.6e-17 93.2 100 52.0
Hund16701 Selenicereus undatus HOM05D001772 ORTHO05D005958 2.8e-17 92.4 99 49.5
arahy.Tifrunner.gnm1.ann1.F3DNBB Arachis hypogaea HOM05D001772 ORTHO05D005958 6.1e-17 91.3 98 49.0
Dinv18731 Davidia involucrata HOM05D001772 ORTHO05D008903 1.4e-16 90.1 98 48.0
Peaxi162Scf00786g00450 Petunia axillaris HOM05D001772 ORTHO05D005958 1.4e-16 90.1 98 52.0
Phvul.010G112100 Phaseolus vulgaris HOM05D001772 ORTHO05D005958 2.3e-16 89.4 98 48.0
Medtr8g027835 Medicago truncatula HOM05D001772 ORTHO05D005958 4.0e-16 88.6 98 45.9
VMungo0331G1517 Vigna mungo HOM05D001772 ORTHO05D005958 4.0e-16 88.6 98 46.9
Actinidia20227 Actinidia chinensis HOM05D001772 ORTHO05D005958 8.9e-16 87.4 102 48.0
TPR.G7664 Trifolium pratense HOM05D001772 ORTHO05D005958 8.9e-16 87.4 117 42.7
Nn3g19052 Nelumbo nucifera HOM05D001772 ORTHO05D005958 1.2e-15 87.0 101 43.6
Ciclev10020161m.g Citrus clementina HOM05D001772 ORTHO05D005958 1.5e-15 86.7 98 46.9
Glyma.07G057200 Glycine max HOM05D001772 ORTHO05D005958 1.5e-15 86.7 98 45.9
Glyma.16G026200 Glycine max HOM05D001772 ORTHO05D005958 1.5e-15 86.7 99 48.5
MBI06_g29328_MAGBIO Magnolia biondii HOM05D001772 ORTHO05D005958 1.5e-15 86.7 127 41.7
arahy.Tifrunner.gnm1.ann1.8C9R1J Arachis hypogaea HOM05D001772 ORTHO05D005958 2.0e-15 86.3 99 47.5
Nitab4.5_0000360g0010 Nicotiana tabacum HOM05D001772 ORTHO05D005958 2.0e-15 86.3 101 48.5
Peaxi162Scf00218g00416 Petunia axillaris HOM05D001772 ORTHO05D005958 2.0e-15 86.3 99 45.5
Lj3g0001091 Lotus japonicus HOM05D001772 ORTHO05D005958 2.6e-15 85.9 100 46.0
MSTRG.17331 Avicennia marina HOM05D001772 ORTHO05D005958 3.4e-15 85.5 99 44.4
CsaV3_3G008160 Cucumis sativus L. HOM05D001772 ORTHO05D005958 3.4e-15 85.5 99 41.4
QL04p056704 Quercus lobata HOM05D001772 ORTHO05D005958 3.4e-15 85.5 98 43.9
Gohir.A08G125900 Gossypium hirsutum HOM05D001772 ORTHO05D005958 5.7e-15 84.7 124 41.1
Hma1.2p1_0077F.1_g039660 Hydrangea macrophylla HOM05D001772 ORTHO05D005958 5.7e-15 84.7 98 43.9
Potri.002G169100 Populus trichocarpa HOM05D001772 ORTHO05D005958 5.7e-15 84.7 98 46.9
vmacro20858 Vaccinium macrocarpon HOM05D001772 ORTHO05D005958 5.7e-15 84.7 102 42.2
arahy.Tifrunner.gnm1.ann1.DXZ71K Arachis hypogaea HOM05D001772 ORTHO05D005958 7.5e-15 84.3 99 46.5
Nn1g01834 Nelumbo nucifera HOM05D001772 ORTHO05D005958 7.5e-15 84.3 101 46.5
Sed0022865 Sechium edule HOM05D001772 ORTHO05D005958 7.5e-15 84.3 98 44.9
MD01G1078500 Malus domestica HOM05D001772 ORTHO05D005958 9.8e-15 84.0 98 45.9
Nitab4.5_0000838g0040 Nicotiana tabacum HOM05D001772 ORTHO05D005958 9.8e-15 84.0 98 48.0
Gohir.D08G147000 Gossypium hirsutum HOM05D001772 ORTHO05D005958 1.3e-14 83.6 124 41.1
Gorai.004G152500 Gossypium raimondii HOM05D001772 ORTHO05D005958 1.3e-14 83.6 124 41.1
Psat4g160440 Pisum sativum HOM05D001772 ORTHO05D005958 1.3e-14 83.6 120 43.3
Prupe.2G185500 Prunus persica HOM05D001772 ORTHO05D005958 1.3e-14 83.6 98 43.9
Ca_26358_v3 Cicer arietinum L. HOM05D001772 ORTHO05D005958 1.7e-14 83.2 117 41.0
CSS0037193 Camellia sinensis var. sinensis HOM05D001772 ORTHO05D005958 2.2e-14 82.8 101 44.6
ClCG05G000930 Citrullus lanatus HOM05D001772 ORTHO05D005958 2.2e-14 82.8 99 41.4
TAR374G0181 Trochodendron aralioides HOM05D001772 ORTHO05D005958 2.2e-14 82.8 101 43.6
CSS0019350 Camellia sinensis var. sinensis HOM05D001772 ORTHO05D005958 2.8e-14 82.4 101 44.6
Sabra02G0143000 Salix brachista HOM05D001772 ORTHO05D005958 2.8e-14 82.4 98 46.9
TAR636G2875 Trochodendron aralioides HOM05D001772 ORTHO05D005958 2.8e-14 82.4 101 44.6
CAN.G818.1 Capsicum annuum HOM05D001772 ORTHO05D005958 3.7e-14 82.0 100 43.0
Manes.01G247500 Manihot esculenta HOM05D001772 ORTHO05D005958 3.7e-14 82.0 98 45.9
CANSAT56G1036 Cannabis sativa HOM05D001772 ORTHO05D008903 4.9e-14 81.6 98 43.9
CANSAT56G1679 Cannabis sativa HOM05D001772 ORTHO05D008903 4.9e-14 81.6 98 43.9
Aqoxy7G00134 Aquilegia oxysepala HOM05D001772 ORTHO05D005958 6.3e-14 81.3 101 43.6
COL.COLO4_06308 Corchorus olitorius HOM05D001772 ORTHO05D005958 6.3e-14 81.3 98 46.9
FvH4_7g16190 Fragaria vesca HOM05D001772 ORTHO05D005958 6.3e-14 81.3 98 44.9
Nitab4.5_0011592g0020 Nicotiana tabacum HOM05D001772 ORTHO05D005958 6.3e-14 81.3 98 46.9
CiPaw.01G074300 Carya illinoinensis HOM05D001772 ORTHO05D005958 1.1e-13 80.5 98 43.9
Nitab4.5_0001123g0060 Nicotiana tabacum HOM05D001772 ORTHO05D005958 1.1e-13 80.5 101 43.6
FAN01G1646 Fragaria x ananassa HOM05D001772 ORTHO05D008903 1.4e-13 80.1 98 43.9
FAN06G4998 Fragaria x ananassa HOM05D001772 ORTHO05D008903 1.4e-13 80.1 98 43.9
FAN03G0169 Fragaria x ananassa HOM05D001772 ORTHO05D008903 1.8e-13 79.7 98 43.9
FAN10G1004 Fragaria x ananassa HOM05D001772 ORTHO05D005958 1.8e-13 79.7 98 42.9
FAN10G2954 Fragaria x ananassa HOM05D001772 ORTHO05D008903 1.8e-13 79.7 98 42.9
Lsat_1_v5_gn_3_139620 Lactuca sativa HOM05D001772 ORTHO05D005958 1.8e-13 79.7 101 44.6
Oeu043209.1 Olea europaea HOM05D001772 ORTHO05D005958 1.8e-13 79.7 98 39.8
Haze_15634 Corylus avellana HOM05D001772 ORTHO05D005958 2.4e-13 79.3 98 43.9
MELO3C006035.2 Cucumis melo HOM05D001772 ORTHO05D005958 2.4e-13 79.3 99 38.4
TAR375G0592 Trochodendron aralioides HOM05D001772 ORTHO05D005958 2.4e-13 79.3 98 44.9
Dinv32568 Davidia involucrata HOM05D001772 ORTHO05D005958 3.2e-13 79.0 98 43.9
TWI23G1206 Tripterygium wilfordii HOM05D001772 ORTHO05D005958 3.2e-13 79.0 98 44.9
unitig_8.g4994 Utricularia gibba HOM05D000331 ORTHO05D005958 3.2e-13 79.0 99 45.5
FAN06G2365 Fragaria x ananassa HOM05D001772 ORTHO05D008903 4.1e-13 78.6 98 42.9
Migut.N01556 Erythranthe guttata HOM05D001772 ORTHO05D005958 5.4e-13 78.2 102 43.1
Eucgr.E00068 Eucalyptus grandis HOM05D001772 ORTHO05D005958 5.4e-13 78.2 101 42.6
Rhsim01G0171300 Rhododendron simsii HOM05D001772 ORTHO05D005958 5.4e-13 78.2 101 39.6
Lalb_Chr17g0342481 Lupinus albus HOM05D001772 ORTHO05D005958 7.0e-13 77.8 98 43.9
BraA09t35751Z Brassica rapa HOM05D001772 ORTHO05D005958 9.2e-13 77.4 99 45.5
Lj9A595G54 Lonicera japonica HOM05D001772 ORTHO05D005958 9.2e-13 77.4 99 43.4
Thecc.01G345000 Theobroma cacao HOM05D001772 ORTHO05D005958 1.2e-12 77.0 98 42.9
Duzib138G1424 Durio zibethinus HOM05D001772 ORTHO05D005958 1.6e-12 76.6 98 41.8
Duzib133G1484 Durio zibethinus HOM05D001772 ORTHO05D005958 2.0e-12 76.3 118 37.3
Thhalv10028649m.g Eutrema salsugineum HOM05D001772 ORTHO05D005958 2.0e-12 76.3 99 44.4
Lalb_Chr10g0100391 Lupinus albus HOM05D001772 ORTHO05D005958 2.7e-12 75.9 96 42.7
Sp6g01090 Schrenkiella parvula HOM05D001772 ORTHO05D005958 2.7e-12 75.9 99 44.4
PGSC0003DMG400000214 Solanum tuberosum HOM05D001772 ORTHO05D005958 2.7e-12 75.9 99 46.5
A03p31810 Brassica napus HOM05D001772 ORTHO05D008903 3.5e-12 75.5 99 44.4
BraA03t12356Z Brassica rapa HOM05D001772 ORTHO05D008903 3.5e-12 75.5 99 44.4
Cfa003819 Carpinus fangiana HOM05D001772 ORTHO05D008903 3.5e-12 75.5 98 42.9
Cc02_g39150 Coffea canephora HOM05D001772 ORTHO05D005958 3.5e-12 75.5 101 43.6
DCAR_008656 Daucus carota HOM05D001772 ORTHO05D005958 3.5e-12 75.5 98 42.9
Manes.05G024700 Manihot esculenta HOM05D001772 ORTHO05D005958 3.5e-12 75.5 122 40.2
BcaC01g06840 Brassica carinata HOM05D001772 ORTHO05D005958 4.5e-12 75.1 99 44.4
A09p00240 Brassica napus HOM05D001772 ORTHO05D005958 4.5e-12 75.1 99 44.4
C09p00870 Brassica napus HOM05D001772 ORTHO05D005958 4.5e-12 75.1 99 44.4
BolC3t16157H Brassica oleracea HOM05D001772 ORTHO05D008903 4.5e-12 75.1 99 44.4
PGR042G0802 Punica granatum HOM05D001772 ORTHO05D005958 4.5e-12 75.1 121 40.5
RcHm_v2.0_Chr1g0359191 Rosa chinensis HOM05D001772 ORTHO05D005958 4.5e-12 75.1 98 42.9
BcaB01g02344 Brassica carinata HOM05D001772 ORTHO05D005958 5.9e-12 74.7 99 44.4
CAN.G986.28 Capsicum annuum HOM05D001772 ORTHO05D005958 7.8e-12 74.3 99 46.5
AT4G01050 Arabidopsis thaliana HOM05D001772 ORTHO05D005958 1.3e-11 73.6 99 43.4
C03p38820 Brassica napus HOM05D001772 ORTHO05D008903 1.3e-11 73.6 99 43.4
BolC9t53021H Brassica oleracea HOM05D001772 ORTHO05D005958 1.3e-11 73.6 99 43.4
Carub.0006s3611 Capsella rubella HOM05D001772 ORTHO05D005958 1.3e-11 73.6 99 43.4
PSO063G7149 Papaver somniferum HOM05D001772 ORTHO05D005958 1.3e-11 73.6 100 41.0
PSO170G2207 Papaver somniferum HOM05D001772 ORTHO05D005958 1.3e-11 73.6 100 41.0
Solyc01g095670.4 Solanum lycopersicum HOM05D001772 ORTHO05D005958 1.3e-11 73.6 99 45.5
Sopen01g039410 Solanum pennellii HOM05D001772 ORTHO05D005958 1.3e-11 73.6 99 45.5
AL6G52330 Arabidopsis lyrata HOM05D001772 ORTHO05D005958 1.7e-11 73.2 99 43.4
BcaC04g24121 Brassica carinata HOM05D001772 ORTHO05D005958 1.7e-11 73.2 98 43.9
SGA_v2.0_scaffold5G03005 Striga asiatica HOM05D001772 ORTHO05D005958 2.9e-11 72.4 98 39.8
BcaC04g24115 Brassica carinata HOM05D001772 ORTHO05D005958 3.9e-11 72.0 98 44.9
Potri.014G096500 Populus trichocarpa HOM05D001772 ORTHO05D005958 3.9e-11 72.0 98 41.8
MD07G1147500 Malus domestica HOM05D001772 ORTHO05D005958 5.0e-11 71.6 98 40.8
PGSC0003DMG400019883 Solanum tuberosum HOM05D001772 ORTHO05D005958 5.0e-11 71.6 100 41.0
Aqoxy5G04175 Aquilegia oxysepala HOM05D001772 ORTHO05D005958 1.1e-10 70.5 103 40.8
SalBow3G4655 Salvia bowleyana HOM05D001772 ORTHO05D005958 1.1e-10 70.5 99 43.4
THA.LOC104809830 Tarenaya hassleriana HOM05D001772 ORTHO05D005958 1.1e-10 70.5 99 40.4
CARHR249260 Cardamine hirsuta HOM05D001772 ORTHO05D005958 1.5e-10 70.1 99 41.4
HPP92_008635 Vanilla planifolia HOM05D001772 ORTHO05D005958 1.9e-10 69.7 98 41.8
Actinidia28128 Actinidia chinensis HOM05D001772 ORTHO05D005958 2.5e-10 69.3 102 42.2
ECA240G4072 Erigeron canadensis HOM05D001772 ORTHO05D008903 3.3e-10 68.9 102 41.2
Aa31LG5G910 Aethionema arabicum HOM05D001772 ORTHO05D005958 5.6e-10 68.2 99 41.4
MBI06_g46728_MAGBIO Magnolia biondii HOM05D001772 ORTHO05D005958 5.6e-10 68.2 127 34.6
Solyc10g009570.3 Solanum lycopersicum HOM05D001772 ORTHO05D005958 5.6e-10 68.2 100 41.0
Sopen10g005380 Solanum pennellii HOM05D001772 ORTHO05D005958 5.6e-10 68.2 100 41.0
Sabra14G0070800 Salix brachista HOM05D001772 ORTHO05D008903 7.3e-10 67.8 98 39.8
TAR374G0629 Trochodendron aralioides HOM05D001772 ORTHO05D005958 9.5e-10 67.4 78 44.9
ATR0589G056 Amborella trichopoda HOM05D001772 ORTHO05D005958 1.2e-09 67.0 101 37.6
Hma1.2p1_0384F.1_g141180 Hydrangea macrophylla HOM05D001772 ORTHO05D005958 2.8e-09 65.9 101 39.6
HanXRQChr11g0353041 Helianthus annuus HOM05D001772 ORTHO05D005958 4.7e-09 65.1 105 41.9
GSVIVG01027075001 Vitis vinifera HOM05D001772 ORTHO05D005958 1.0e-08 63.9 53 56.6
SGA_v2.0_scaffold43G16374 Striga asiatica HOM05D001772 ORTHO05D005958 2.3e-08 62.8 100 38.0
Gohir.D12G114700 Gossypium hirsutum HOM05D001772 ORTHO05D005958 1.2e-07 60.5 98 34.7
Gorai.008G124200 Gossypium raimondii HOM05D001772 ORTHO05D005958 1.2e-07 60.5 98 34.7
Oeu007904.1 Olea europaea HOM05D001772 ORTHO05D005958 1.2e-07 60.5 51 54.9
Gohir.A12G111400 Gossypium hirsutum HOM05D001772 ORTHO05D005958 2.0e-07 59.7 98 34.7


User provided reference genes

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