Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0002550 Simmondsia chinensis HOM05D007265 ORTHO05D009118 2.0e-65 252.3 130 100.0
Cc02_g39560 Coffea canephora HOM05D007265 ORTHO05D009118 3.8e-19 98.6 57 84.2
Nitab4.5_0003865g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 6.4e-19 97.8 57 84.2
Hund27188 Selenicereus undatus HOM05D007265 ORTHO05D009118 6.4e-19 97.8 55 87.3
Nitab4.5_0000258g0270 Nicotiana tabacum HOM05D007265 ORTHO05D009118 8.4e-19 97.4 57 82.5
Oeu007878.1 Olea europaea HOM05D007265 ORTHO05D009118 1.1e-18 97.1 55 85.5
THA.LOC104802081 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 1.4e-18 96.7 57 75.4
CSS0038215 Camellia sinensis var. sinensis HOM05D007265 ORTHO05D009118 1.9e-18 96.3 57 80.7
Lsat_1_v5_gn_3_126500 Lactuca sativa HOM05D007265 ORTHO05D009118 2.4e-18 95.9 61 78.7
ClCG06G002640 Citrullus lanatus HOM05D007265 ORTHO05D009118 3.2e-18 95.5 56 83.9
Lj7E499T0 Lonicera japonica HOM05D007265 ORTHO05D009118 3.2e-18 95.5 57 78.9
Oeu008708.1 Olea europaea HOM05D007265 ORTHO05D009118 3.2e-18 95.5 57 80.7
MSTRG.17355 Avicennia marina HOM05D007265 ORTHO05D009118 4.2e-18 95.1 55 83.6
Hma1.2p1_0390F.1_g142620 Hydrangea macrophylla HOM05D007265 ORTHO05D009118 5.4e-18 94.7 57 78.9
THA.LOC104817372 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 5.4e-18 94.7 57 73.7
Atru.chr5.686 Acer truncatum HOM05D007265 ORTHO05D009118 7.1e-18 94.4 57 78.9
MELO3C022263.2 Cucumis melo HOM05D007265 ORTHO05D009118 7.1e-18 94.4 57 78.9
CiPaw.01G077600 Carya illinoinensis HOM05D007265 ORTHO05D009118 9.2e-18 94.0 57 77.2
Gohir.D12G116700 Gossypium hirsutum HOM05D007265 ORTHO05D009118 9.2e-18 94.0 57 82.5
Nn1g00287 Nelumbo nucifera HOM05D007265 ORTHO05D009118 9.2e-18 94.0 57 78.9
PSO063G4371 Papaver somniferum HOM05D007265 ORTHO05D009118 9.2e-18 94.0 57 78.9
AT2G46540 Arabidopsis thaliana HOM05D007265 ORTHO05D009118 1.2e-17 93.6 57 77.2
BcaC02g12671 Brassica carinata HOM05D007265 ORTHO05D009118 1.2e-17 93.6 57 77.2
BcaC02g12679 Brassica carinata HOM05D007265 ORTHO05D009118 1.2e-17 93.6 57 77.2
C04p01380 Brassica napus HOM05D007265 ORTHO05D009118 1.2e-17 93.6 57 77.2
BolC4t21791H Brassica oleracea HOM05D007265 ORTHO05D009118 1.2e-17 93.6 57 77.2
BraA05t19124Z Brassica rapa HOM05D007265 ORTHO05D009118 1.2e-17 93.6 57 77.2
Carub.0004s2926 Capsella rubella HOM05D007265 ORTHO05D009118 1.2e-17 93.6 57 77.2
HanXRQChr03g0093001 Helianthus annuus HOM05D007265 ORTHO05D009118 1.2e-17 93.6 57 78.9
PGR042G1917 Punica granatum HOM05D007265 ORTHO05D009118 1.2e-17 93.6 57 78.9
Sp4g28590 Schrenkiella parvula HOM05D007265 ORTHO05D009118 1.2e-17 93.6 57 77.2
AL4G45970 Arabidopsis lyrata HOM05D007265 ORTHO05D009118 1.6e-17 93.2 57 75.4
Duzib138G0325 Durio zibethinus HOM05D007265 ORTHO05D009118 1.6e-17 93.2 57 80.7
PSO170G4391 Papaver somniferum HOM05D007265 ORTHO05D009118 1.6e-17 93.2 57 78.9
SalBow5G3999 Salvia bowleyana HOM05D002476 ORTHO05D002652 1.6e-17 93.2 55 80.0
Sed0002056 Sechium edule HOM05D007265 ORTHO05D009118 1.6e-17 93.2 57 78.9
Aqoxy5G04249 Aquilegia oxysepala HOM05D007265 ORTHO05D009118 2.1e-17 92.8 57 77.2
A05p01230 Brassica napus HOM05D007265 ORTHO05D009118 2.1e-17 92.8 74 63.5
Gohir.A12G113200 Gossypium hirsutum HOM05D007265 ORTHO05D009118 2.1e-17 92.8 57 80.7
arahy.Tifrunner.gnm1.ann1.4N8QKH Arachis hypogaea HOM05D007265 ORTHO05D009118 3.5e-17 92.0 57 78.9
EL10Ac1g00247 Beta vulgaris HOM05D007265 ORTHO05D009118 3.5e-17 92.0 84 58.3
ATR0602G127 Amborella trichopoda HOM05D007265 ORTHO05D009118 4.6e-17 91.7 57 77.2
Gorai.008G126400 Gossypium raimondii HOM05D007265 ORTHO05D009118 4.6e-17 91.7 55 83.6
TAR374G1528 Trochodendron aralioides HOM05D007265 ORTHO05D009118 4.6e-17 91.7 54 79.6
CsaV3_6G008500 Cucumis sativus L. HOM05D007265 ORTHO05D009118 6.0e-17 91.3 57 77.2
GSVIVG01027169001 Vitis vinifera HOM05D007265 ORTHO05D009118 6.0e-17 91.3 57 73.7
Ciclev10023834m.g Citrus clementina HOM05D007265 ORTHO05D009118 7.8e-17 90.9 57 77.2
CAN.G1415.20 Capsicum annuum HOM05D007265 ORTHO05D009118 1.0e-16 90.5 57 77.2
Gohir.A11G097900 Gossypium hirsutum HOM05D007265 ORTHO05D009118 1.0e-16 90.5 57 77.2
Gohir.D11G102600 Gossypium hirsutum HOM05D007265 ORTHO05D009118 1.0e-16 90.5 57 77.2
MD01G1083600 Malus domestica HOM05D007265 ORTHO05D009118 1.0e-16 90.5 57 75.4
MD07G1152300 Malus domestica HOM05D007265 ORTHO05D009118 1.0e-16 90.5 57 75.4
COL.COLO4_06226 Corchorus olitorius HOM05D007265 ORTHO05D009118 1.3e-16 90.1 54 83.3
Lsat_1_v5_gn_4_39661 Lactuca sativa HOM05D007265 ORTHO05D009118 1.3e-16 90.1 57 77.2
Nitab4.5_0001763g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 2.3e-16 89.4 57 77.2
Prupe.2G190600 Prunus persica HOM05D007265 ORTHO05D009118 2.3e-16 89.4 57 75.4
vmacro13170 Vaccinium macrocarpon HOM05D007265 ORTHO05D009118 2.3e-16 89.4 59 76.3
Aa31LG1G27910 Aethionema arabicum HOM05D007265 ORTHO05D009118 3.0e-16 89.0 54 77.8
Thecc.01G340400 Theobroma cacao HOM05D007265 ORTHO05D009118 3.0e-16 89.0 57 75.4
Migut.N01534 Erythranthe guttata HOM05D007265 ORTHO05D009118 3.9e-16 88.6 57 75.4
Sabra02G0140200 Salix brachista HOM05D007265 ORTHO05D009118 3.9e-16 88.6 59 72.9
Os05g0542100 Oryza sativa ssp. japonica HOM05D007265 ORTHO05D009118 5.1e-16 88.2 57 73.7
DCAR_005402 Daucus carota HOM05D007265 ORTHO05D009118 6.6e-16 87.8 57 75.4
Duzib133G0073 Durio zibethinus HOM05D007265 ORTHO05D009118 6.6e-16 87.8 56 78.6
arahy.Tifrunner.gnm1.ann1.PH1UFL Arachis hypogaea HOM05D007265 ORTHO05D009118 8.7e-16 87.4 57 73.7
HanXRQChr13g0423241 Helianthus annuus HOM05D007265 ORTHO05D009118 8.7e-16 87.4 57 75.4
Manes.01G244801 Manihot esculenta HOM05D007265 ORTHO05D009118 8.7e-16 87.4 57 73.7
PGSC0003DMG400000233 Solanum tuberosum HOM05D007265 ORTHO05D009118 8.7e-16 87.4 57 75.4
MBI07_g24775_MAGBIO Magnolia biondii HOM05D007265 ORTHO05D009118 1.1e-15 87.0 54 77.8
Manes.05G021500 Manihot esculenta HOM05D007265 ORTHO05D009118 1.1e-15 87.0 57 71.9
Potri.002G173101 Populus trichocarpa HOM05D007265 ORTHO05D009118 1.5e-15 86.7 59 72.9
HanXRQChr16g0521331 Helianthus annuus HOM05D007265 ORTHO05D009118 2.5e-15 85.9 57 75.4
Hund16719 Selenicereus undatus HOM05D007265 ORTHO05D009118 2.5e-15 85.9 75 62.7
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 2.5e-15 85.9 57 70.2
Ah.05g179400 Amaranthus hybridus HOM05D007265 ORTHO05D009118 3.3e-15 85.5 57 71.9
AUR62004508 Chenopodium quinoa HOM05D007265 ORTHO05D009118 3.3e-15 85.5 54 74.1
Glyma.03G258500 Glycine max HOM05D007265 ORTHO05D009118 3.3e-15 85.5 57 71.9
Glyma.19G257100 Glycine max HOM05D007265 ORTHO05D009118 3.3e-15 85.5 57 71.9
TWI59G0786 Tripterygium wilfordii HOM05D007265 ORTHO05D009118 3.3e-15 85.5 57 71.9
BcaC02g07039 Brassica carinata HOM05D007265 ORTHO05D009118 4.3e-15 85.1 57 71.9
A04p34450 Brassica napus HOM05D007265 ORTHO05D009118 4.3e-15 85.1 57 71.9
DCAR_025264 Daucus carota HOM05D007265 ORTHO05D009118 4.3e-15 85.1 57 71.9
Phvul.006G114500 Phaseolus vulgaris HOM05D007265 ORTHO05D009118 4.3e-15 85.1 57 71.9
Psat3g174080 Pisum sativum HOM05D007265 ORTHO05D009118 4.3e-15 85.1 61 67.2
CARHR141880 Cardamine hirsuta HOM05D007265 ORTHO05D009118 7.3e-15 84.3 57 70.2
Solyc01g096090.4 Solanum lycopersicum HOM05D007265 ORTHO05D009118 7.3e-15 84.3 57 73.7
Sopen01g039810 Solanum pennellii HOM05D007265 ORTHO05D009118 7.3e-15 84.3 57 73.7
Rhsim01G0174400 Rhododendron simsii HOM05D007265 ORTHO05D009118 9.6e-15 84.0 71 63.4
BraA04t18903Z Brassica rapa HOM05D007265 ORTHO05D009118 1.6e-14 83.2 57 70.2
CANSAT56G3703 Cannabis sativa HOM05D007265 ORTHO05D009118 2.1e-14 82.8 57 68.4
Psat3g001880 Pisum sativum HOM05D007265 ORTHO05D009118 2.1e-14 82.8 52 75.0
Lj1g0009143 Lotus japonicus HOM05D007265 ORTHO05D009118 6.2e-14 81.3 57 68.4
Nn3g18955 Nelumbo nucifera HOM05D007265 ORTHO05D009118 6.2e-14 81.3 47 85.1
BcaNung06658 Brassica carinata HOM05D007265 ORTHO05D009118 1.4e-13 80.1 48 79.2
BolC4t28709H Brassica oleracea HOM05D007265 ORTHO05D009118 1.8e-13 79.7 57 66.7
Medtr7g117700 Medicago truncatula HOM05D007265 ORTHO05D009118 2.4e-13 79.3 57 64.9
Ca_09518_v3 Cicer arietinum L. HOM05D007265 ORTHO05D009118 3.1e-13 79.0 57 63.2
Lalb_Chr18g0044541 Lupinus albus HOM05D007265 ORTHO05D009118 4.0e-13 78.6 57 70.2
Lalb_Chr15g0076341 Lupinus albus HOM05D007265 ORTHO05D009118 6.9e-13 77.8 57 66.7
BcaC02g07016 Brassica carinata HOM05D007265 ORTHO05D009118 9.0e-13 77.4 49 73.5
Gorai.007G109700 Gossypium raimondii HOM05D007265 ORTHO05D009118 9.0e-13 77.4 48 79.2
Os01g0705500 Oryza sativa ssp. japonica HOM05D007265 ORTHO05D009118 4.4e-12 75.1 49 73.5
Thhalv10001742m.g Eutrema salsugineum HOM05D007265 ORTHO05D009118 8.4e-11 70.9 105 41.9
TAR375G0162 Trochodendron aralioides HOM05D007265 ORTHO05D009118 9.6e-07 57.4 45 73.3


User provided reference genes

Program Settings