Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0002510 Simmondsia chinensis HOM05D005781 ORTHO05D006835 1.4e-47 192.6 97 100.0
Hund27185 Selenicereus undatus HOM05D005781 ORTHO05D006835 2.4e-34 148.7 100 73.0
EL10Ac7g17336 Beta vulgaris HOM05D005781 ORTHO05D006835 1.3e-32 142.9 99 69.7
Ah.04g154640 Amaranthus hybridus HOM05D005781 ORTHO05D006835 6.4e-32 140.6 100 69.0
Ciclev10023034m.g Citrus clementina HOM05D005781 ORTHO05D006835 4.2e-31 137.9 98 70.4
Oeu052918.1 Olea europaea HOM05D005781 ORTHO05D006835 6.0e-30 134.0 93 69.9
Manes.01G244300 Manihot esculenta HOM05D005781 ORTHO05D006835 7.9e-30 133.7 98 68.4
Thecc.01G232600 Theobroma cacao HOM05D005781 ORTHO05D006835 7.9e-30 133.7 98 69.4
Cc05_g05310 Coffea canephora HOM05D005781 ORTHO05D006835 1.0e-29 133.3 97 69.1
CiPaw.06G025900 Carya illinoinensis HOM05D005781 ORTHO05D006835 2.3e-29 132.1 97 66.0
COL.COLO4_20773 Corchorus olitorius HOM05D005781 ORTHO05D006835 3.0e-29 131.7 98 69.4
PGR031G1812 Punica granatum HOM05D005781 ORTHO05D006835 3.0e-29 131.7 97 64.9
Atru.chr1.3778 Acer truncatum HOM05D005781 ORTHO05D006835 3.9e-29 131.3 98 65.3
Gohir.D07G208300 Gossypium hirsutum HOM05D005781 ORTHO05D006835 3.9e-29 131.3 98 67.3
Manes.02G161400 Manihot esculenta HOM05D005781 ORTHO05D006835 3.9e-29 131.3 98 66.3
Rhsim13G0061400 Rhododendron simsii HOM05D005781 ORTHO05D006835 3.9e-29 131.3 97 64.9
COL.COLO4_33816 Corchorus olitorius HOM05D005781 ORTHO05D006835 5.1e-29 131.0 98 69.4
Gohir.A07G202100 Gossypium hirsutum HOM05D005781 ORTHO05D006835 5.1e-29 131.0 98 67.3
Cfa015971 Carpinus fangiana HOM05D005781 ORTHO05D006835 6.7e-29 130.6 95 65.3
THA.LOC104825391 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 6.7e-29 130.6 98 69.4
MBI09_g43998_MAGBIO Magnolia biondii HOM05D005781 ORTHO05D006835 8.7e-29 130.2 96 65.6
Rhsim06G0009100 Rhododendron simsii HOM05D005781 ORTHO05D006835 8.7e-29 130.2 97 63.9
Dinv12261 Davidia involucrata HOM05D005781 ORTHO05D006835 1.5e-28 129.4 97 63.9
Gorai.001G235000 Gossypium raimondii HOM05D005781 ORTHO05D006835 1.5e-28 129.4 98 67.3
ClCG05G000700 Citrullus lanatus HOM05D005781 ORTHO05D006835 1.9e-28 129.0 94 69.1
Gohir.A08G193000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 2.5e-28 128.6 98 65.3
Sed0027756 Sechium edule HOM05D005781 ORTHO05D006835 2.5e-28 128.6 94 69.1
Sopen07g026470 Solanum pennellii HOM05D005781 ORTHO05D006835 3.3e-28 128.3 97 64.9
CANSAT54G0055 Cannabis sativa HOM05D005781 ORTHO05D006835 4.3e-28 127.9 97 64.9
Sed0023332 Sechium edule HOM05D005781 ORTHO05D006835 4.3e-28 127.9 94 69.1
Duzib138G0305 Durio zibethinus HOM05D005781 ORTHO05D006835 7.4e-28 127.1 98 64.3
Prupe.6G320800 Prunus persica HOM05D005781 ORTHO05D006835 1.3e-27 126.3 97 66.0
Gohir.D08G211000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.6e-27 125.9 98 64.3
Gorai.004G223700 Gossypium raimondii HOM05D005781 ORTHO05D006835 1.6e-27 125.9 98 64.3
Potri.001G082000 Populus trichocarpa HOM05D005781 ORTHO05D006835 1.6e-27 125.9 98 63.3
DCAR_003312 Daucus carota HOM05D005781 ORTHO05D006835 2.1e-27 125.6 101 64.4
DCAR_022248 Daucus carota HOM05D005781 ORTHO05D006835 2.1e-27 125.6 98 62.2
MD12G1213200 Malus domestica HOM05D005781 ORTHO05D006835 2.1e-27 125.6 96 64.6
MD04G1200700 Malus domestica HOM05D005781 ORTHO05D006835 3.7e-27 124.8 96 64.6
TWI63G1301 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 3.7e-27 124.8 98 60.2
Zm00001eb109340 Zea mays HOM05D005781 ORTHO05D006835 3.7e-27 124.8 97 61.9
PGSC0003DMG400026192 Solanum tuberosum HOM05D005781 ORTHO05D006835 4.8e-27 124.4 97 63.9
Migut.H01206 Erythranthe guttata HOM05D005781 ORTHO05D006835 6.2e-27 124.0 97 67.0
Eucgr.D02385 Eucalyptus grandis HOM05D005781 ORTHO05D006835 8.1e-27 123.6 98 64.3
Nn6g33491 Nelumbo nucifera HOM05D005781 ORTHO05D006835 8.1e-27 123.6 97 63.9
Oeu034339.1 Olea europaea HOM05D005781 ORTHO05D006835 1.1e-26 123.2 93 65.6
Nn8g40131 Nelumbo nucifera HOM05D005781 ORTHO05D006835 1.4e-26 122.9 97 62.9
CDE02G0151 Ceratophyllum demersum HOM05D005781 ORTHO05D006835 1.8e-26 122.5 97 60.8
Dinv36923 Davidia involucrata HOM05D005781 ORTHO05D006835 6.9e-26 120.6 84 70.2
Os01g0258600 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 9.0e-26 120.2 97 59.8
Aqoxy5G00270 Aquilegia oxysepala HOM05D005781 ORTHO05D006835 1.5e-25 119.4 96 63.5
CsaV3_3G007920 Cucumis sativus L. HOM05D005781 ORTHO05D006835 1.5e-25 119.4 102 62.7
TWI38G0894 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 2.6e-25 118.6 98 61.2
Lj3g0001466 Lotus japonicus HOM05D005781 ORTHO05D006835 5.8e-25 117.5 97 61.9
Lj4g0026259 Lotus japonicus HOM05D005781 ORTHO05D006835 1.3e-24 116.3 97 61.9
RcHm_v2.0_Chr3g0455721 Rosa chinensis HOM05D005781 ORTHO05D006835 1.3e-24 116.3 97 60.8
Ca_21653_v3 Cicer arietinum L. HOM05D005781 ORTHO05D006835 2.2e-24 115.5 97 58.8
Lj4g0019743 Lotus japonicus HOM05D005781 ORTHO05D006835 2.2e-24 115.5 97 59.8
Lsat_1_v5_gn_9_14361 Lactuca sativa HOM05D005781 ORTHO05D006835 3.8e-24 114.8 98 61.2
MELO3C006010.2 Cucumis melo HOM05D005781 ORTHO05D006835 4.9e-24 114.4 102 60.8
Lalb_Chr13g0300501 Lupinus albus HOM05D005781 ORTHO05D006835 4.9e-24 114.4 97 61.9
FAN14G3705 Fragaria x ananassa HOM05D006406 ORTHO05D007883 8.4e-24 113.6 97 58.8
FAN05G5419 Fragaria x ananassa HOM05D006406 ORTHO05D007883 1.1e-23 113.2 97 58.8
FAN09G0731 Fragaria x ananassa HOM05D005781 ORTHO05D006835 1.1e-23 113.2 97 58.8
CSS0033648 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 5.5e-23 110.9 85 64.7
Cpa.g.c32851 Carica papaya HOM05D005781 ORTHO05D006835 5.5e-23 110.9 86 62.8
vmacro02893 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 7.1e-23 110.5 96 59.4
Cfa011814 Carpinus fangiana HOM05D005781 ORTHO05D006835 9.3e-23 110.2 97 58.8
ECA247G2075 Erigeron canadensis HOM05D005781 ORTHO05D006835 9.3e-23 110.2 98 60.2
Glyma.05G129800 Glycine max HOM05D005781 ORTHO05D006835 9.3e-23 110.2 97 56.7
Atru.chr5.698 Acer truncatum HOM05D005781 ORTHO05D006835 1.2e-22 109.8 95 57.9
arahy.Tifrunner.gnm1.ann1.EVJW84 Arachis hypogaea HOM05D005781 ORTHO05D006835 1.2e-22 109.8 97 58.8
Thhalv10015111m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 1.2e-22 109.8 102 53.9
Medtr4g115740 Medicago truncatula HOM05D005781 ORTHO05D006835 1.2e-22 109.8 97 57.7
QL04p074672 Quercus lobata HOM05D005781 ORTHO05D006835 1.2e-22 109.8 85 64.7
Thhalv10022933m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 1.6e-22 109.4 99 55.6
Glyma.08G084500 Glycine max HOM05D005781 ORTHO05D006835 1.6e-22 109.4 97 56.7
Hma1.2p1_0841F.1_g227020 Hydrangea macrophylla HOM05D005781 ORTHO05D006835 1.6e-22 109.4 85 60.0
Nitab4.5_0003429g0070 Nicotiana tabacum HOM05D005781 ORTHO05D006835 1.6e-22 109.4 88 63.6
unitig_0.g2200 Utricularia gibba HOM05D005781 ORTHO05D006835 1.6e-22 109.4 96 59.4
Nitab4.5_0001134g0180 Nicotiana tabacum HOM05D005781 ORTHO05D006835 2.1e-22 109.0 93 61.3
Sp6g27160 Schrenkiella parvula HOM05D005781 ORTHO05D006835 3.5e-22 108.2 102 52.9
Zm00001eb374690 Zea mays HOM05D005781 ORTHO05D006835 3.5e-22 108.2 71 69.0
Haze_00504 Corylus avellana HOM05D005781 ORTHO05D006835 4.6e-22 107.8 85 62.4
BcaB01g04964 Brassica carinata HOM05D005781 ORTHO05D006835 6.0e-22 107.5 102 51.0
Psat4g033600 Pisum sativum HOM05D005781 ORTHO05D006835 6.0e-22 107.5 97 53.6
Nitab4.5_0008807g0010 Nicotiana tabacum HOM05D005781 ORTHO05D006835 1.8e-21 105.9 85 63.5
CSS0000543 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 2.3e-21 105.5 85 61.2
THA.LOC104825885 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 2.3e-21 105.5 86 62.8
Gorai.009G291400 Gossypium raimondii HOM05D005781 ORTHO05D006835 3.9e-21 104.8 86 60.5
A03p08090 Brassica napus HOM05D005781 ORTHO05D006835 5.1e-21 104.4 105 49.5
Phvul.002G194100 Phaseolus vulgaris HOM05D005781 ORTHO05D006835 5.1e-21 104.4 97 53.6
BolC3t13430H Brassica oleracea HOM05D005781 ORTHO05D006835 6.7e-21 104.0 105 49.5
BcaB07g31735 Brassica carinata HOM05D005781 ORTHO05D006835 1.9e-20 102.4 96 51.0
AL6G27950 Arabidopsis lyrata HOM05D005781 ORTHO05D006835 2.5e-20 102.1 106 50.0
Os06g0184100 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 2.5e-20 102.1 85 60.0
Gohir.D05G278050 Gossypium hirsutum HOM05D005781 ORTHO05D006835 3.3e-20 101.7 86 59.3
Peaxi162Scf00007g01414 Petunia axillaris HOM05D005781 ORTHO05D006835 3.3e-20 101.7 85 61.2
AT5G16950 Arabidopsis thaliana HOM05D005781 ORTHO05D006835 5.6e-20 100.9 104 50.0
Solyc07g052913.1 Solanum lycopersicum HOM05D005781 ORTHO05D006835 7.4e-20 100.5 87 58.6
BraA03t10134Z Brassica rapa HOM05D005781 ORTHO05D006835 9.6e-20 100.1 104 49.0
Carub.0006s1516 Capsella rubella HOM05D005781 ORTHO05D006835 9.6e-20 100.1 104 49.0
CARHR196210 Cardamine hirsuta HOM05D005781 ORTHO05D006835 9.6e-20 100.1 104 51.0
RcHm_v2.0_Chr1g0322091 Rosa chinensis HOM05D005781 ORTHO05D006835 1.6e-19 99.4 87 58.6
Atru.chr1.3777 Acer truncatum HOM05D005781 ORTHO05D006835 2.1e-19 99.0 79 64.6
Aa31LG11G12650 Aethionema arabicum HOM05D005781 ORTHO05D006835 2.1e-19 99.0 102 52.9
BcaB01g05237 Brassica carinata HOM05D005781 ORTHO05D006835 2.8e-19 98.6 111 46.8
Sabra01G0058900 Salix brachista HOM05D005781 ORTHO05D006835 2.8e-19 98.6 86 57.0
C03p09360 Brassica napus HOM05D005781 ORTHO05D006835 4.8e-19 97.8 113 46.0
SalBow1G0716 Salvia bowleyana HOM05D005781 ORTHO05D006835 4.8e-19 97.8 94 56.4
vmacro12515 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 6.2e-19 97.4 87 57.5
arahy.Tifrunner.gnm1.ann1.V38LZ0 Arachis hypogaea HOM05D005781 ORTHO05D006835 3.4e-17 91.7 133 42.9
Gohir.A05G276166 Gossypium hirsutum HOM05D005781 ORTHO05D006835 7.6e-17 90.5 86 55.8
Actinidia11611 Actinidia chinensis HOM05D005781 ORTHO05D006835 1.3e-16 89.7 61 67.2
Rhsim06G0009300 Rhododendron simsii HOM05D005781 ORTHO05D006835 1.3e-16 89.7 72 56.9
ATR0626G090 Amborella trichopoda HOM05D005781 ORTHO05D006835 1.7e-16 89.4 82 58.5
HanXRQChr08g0228461 Helianthus annuus HOM05D005781 ORTHO05D006835 2.9e-16 88.6 58 72.4
TPR.G40143 Trifolium pratense HOM05D005781 ORTHO05D006835 1.1e-15 86.7 85 51.8
Haze_11591 Corylus avellana HOM05D005781 ORTHO05D006835 1.4e-15 86.3 74 59.5
SGA_v2.0_scaffold57G20299 Striga asiatica HOM05D005781 ORTHO05D006835 1.4e-15 86.3 81 58.0
Medtr5g009535 Medicago truncatula HOM05D005781 ORTHO05D006835 9.3e-15 83.6 85 51.8
A09p11320 Brassica napus HOM05D005781 ORTHO05D006835 3.5e-14 81.6 87 44.8
BraA09t36770Z Brassica rapa HOM05D005781 ORTHO05D006835 3.5e-14 81.6 87 44.8
Zm00001eb217150 Zea mays HOM05D000360 ORTHO05D006835 9.7e-12 73.6 54 64.8
SalBow1G0213 Salvia bowleyana HOM05D005781 ORTHO05D006835 1.3e-11 73.2 74 52.7
Zm00001eb352440 Zea mays HOM05D000360 ORTHO05D006835 6.3e-11 70.9 54 63.0
Pp3c9_710 Physcomitrium patens HOM05D005781 ORTHO05D006835 1.8e-10 69.3 53 54.7
Mapoly0010s0158 Marchantia polymorpha HOM05D005781 ORTHO05D006835 2.4e-10 68.9 63 49.2
BcaC04g22979 Brassica carinata HOM05D005781 ORTHO05D006835 5.3e-10 67.8 49 55.1
C09p13330 Brassica napus HOM05D005781 ORTHO05D006835 2.0e-09 65.9 76 40.8
BolC9t54226H Brassica oleracea HOM05D005781 ORTHO05D006835 2.0e-09 65.9 76 40.8
BcaB01g05235 Brassica carinata HOM05D005781 ORTHO05D006835 3.4e-09 65.1 41 65.9
VMungo0251G3003 Vigna mungo HOM05D005781 ORTHO05D006835 1.7e-08 62.8 74 47.3
Zm00001eb318190 Zea mays HOM05D000360 ORTHO05D006835 3.6e-06 55.1 43 58.1


User provided reference genes

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