Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 2.2e-74 282.3 155 100.0
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 3.8e-18 95.5 157 47.1
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 6.5e-18 94.7 175 39.4
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 1.9e-17 93.2 134 48.5
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 3.2e-17 92.4 139 46.8
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 7.1e-17 91.3 134 44.0
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 7.1e-17 91.3 135 48.1
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.1e-16 89.7 134 48.5
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 2.7e-16 89.4 133 48.1
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.7e-16 89.4 141 46.1
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.7e-16 89.4 141 46.1
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 2.7e-16 89.4 140 47.1
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 6.1e-16 88.2 134 45.5
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 7.9e-16 87.8 141 45.4
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 1.0e-15 87.4 135 47.4
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 1.0e-15 87.4 134 45.5
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 1.0e-15 87.4 137 48.2
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 1.0e-15 87.4 135 46.7
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 1.8e-15 86.7 135 45.2
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.8e-15 86.7 135 44.4
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 3.0e-15 85.9 133 47.4
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 3.0e-15 85.9 133 47.4
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 3.0e-15 85.9 137 45.3
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.9e-15 85.5 141 44.0
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 3.9e-15 85.5 134 47.0
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 6.7e-15 84.7 133 42.9
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 6.7e-15 84.7 136 44.9
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 1.1e-14 84.0 131 45.8
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 1.1e-14 84.0 135 45.9
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 1.9e-14 83.2 129 45.7
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 2.5e-14 82.8 133 42.1
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 2.5e-14 82.8 135 43.7
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 4.3e-14 82.0 133 44.4
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 4.3e-14 82.0 134 45.5
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 9.7e-14 80.9 134 41.8
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 9.7e-14 80.9 132 43.2
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 1.3e-13 80.5 134 44.8
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 1.3e-13 80.5 131 45.0
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.3e-13 80.5 133 41.4
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.6e-13 80.1 133 41.4
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 2.2e-13 79.7 132 42.4
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 2.8e-13 79.3 129 45.7
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 2.8e-13 79.3 134 43.3
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 2.8e-13 79.3 134 41.8
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 4.8e-13 78.6 135 42.2
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 6.3e-13 78.2 134 44.8
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 6.3e-13 78.2 147 39.5
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 6.3e-13 78.2 134 41.8
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 8.2e-13 77.8 148 41.9
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 8.2e-13 77.8 93 49.5
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 8.2e-13 77.8 136 43.4
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 8.2e-13 77.8 133 41.4
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 1.8e-12 76.6 129 43.4
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 1.8e-12 76.6 135 44.4
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 2.4e-12 76.3 140 40.7
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 2.4e-12 76.3 140 45.0
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 4.1e-12 75.5 140 40.7
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 5.3e-12 75.1 137 44.5
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 5.3e-12 75.1 136 45.6
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 5.3e-12 75.1 133 41.4
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 6.9e-12 74.7 135 40.7
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 9.0e-12 74.3 135 40.0
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 9.0e-12 74.3 124 42.7
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.2e-11 73.9 107 43.9
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 1.2e-11 73.9 135 43.7
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 1.2e-11 73.9 135 42.2
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 1.5e-11 73.6 146 43.8
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 1.5e-11 73.6 125 41.6
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 3.4e-11 72.4 138 41.3
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 3.4e-11 72.4 130 43.8
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 4.5e-11 72.0 131 45.0
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 4.5e-11 72.0 131 43.5
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 4.5e-11 72.0 135 39.3
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 5.9e-11 71.6 130 40.0
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 1.3e-10 70.5 137 43.8
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 1.3e-10 70.5 137 43.8
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.7e-10 70.1 132 40.2
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.7e-10 70.1 131 45.0
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 2.2e-10 69.7 138 42.8
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 3.8e-10 68.9 138 40.6
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 3.8e-10 68.9 129 41.1
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 5.0e-10 68.6 136 39.0
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 6.5e-10 68.2 130 45.4
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 6.5e-10 68.2 138 39.9
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 8.5e-10 67.8 130 40.0
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 8.5e-10 67.8 131 38.9
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 8.5e-10 67.8 125 43.2
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 1.1e-09 67.4 133 41.4
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 1.1e-09 67.4 138 42.8
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.9e-09 66.6 105 42.9
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 1.9e-09 66.6 132 38.6
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 1.9e-09 66.6 135 43.7
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 2.5e-09 66.2 153 37.3
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 3.2e-09 65.9 125 42.4
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 4.2e-09 65.5 125 43.2
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 4.2e-09 65.5 137 42.3
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 4.2e-09 65.5 126 41.3
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 4.2e-09 65.5 128 39.8
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 4.2e-09 65.5 132 38.6
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 4.2e-09 65.5 130 42.3
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 4.2e-09 65.5 130 40.0
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 5.5e-09 65.1 137 42.3
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 5.5e-09 65.1 140 37.9
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 5.5e-09 65.1 130 40.8
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 7.2e-09 64.7 138 40.6
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 7.2e-09 64.7 147 38.1
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 7.2e-09 64.7 130 42.3
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 7.2e-09 64.7 130 42.3
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 7.2e-09 64.7 129 41.1
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 7.2e-09 64.7 124 37.9
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 1.2e-08 63.9 125 43.2
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.2e-08 63.9 126 41.3
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.6e-08 63.5 137 38.7
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.6e-08 63.5 126 40.5
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 1.6e-08 63.5 130 40.0
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 2.1e-08 63.2 124 37.9
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 2.1e-08 63.2 129 37.2
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 2.7e-08 62.8 139 38.1
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 4.6e-08 62.0 137 40.9
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 4.6e-08 62.0 137 40.9
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 4.6e-08 62.0 129 41.1
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 4.6e-08 62.0 129 41.1
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 6.1e-08 61.6 129 41.1
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 7.9e-08 61.2 105 41.9
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 7.9e-08 61.2 153 34.6
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 1.8e-07 60.1 160 36.2
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.8e-07 60.1 124 40.3
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 2.3e-07 59.7 130 39.2
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 3.0e-07 59.3 126 38.9
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 3.9e-07 58.9 124 41.1
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 3.9e-07 58.9 129 39.5
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 6.7e-07 58.2 122 36.9
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 8.8e-07 57.8 128 41.4
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 8.8e-07 57.8 151 36.4
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 8.8e-07 57.8 87 41.4
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 1.1e-06 57.4 140 36.4
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 1.5e-06 57.0 122 41.0
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.0e-06 56.6 138 37.7
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.0e-06 56.6 124 41.9
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 4.3e-06 55.5 91 41.8
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 4.3e-06 55.5 91 41.8
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 5.7e-06 55.1 128 38.3


User provided reference genes

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