Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0002100 Simmondsia chinensis HOM05D007869 ORTHO05D009962 7.5e-175 617.1 312 100.0
EL10Ac1g00161 Beta vulgaris HOM05D007869 ORTHO05D009962 9.4e-101 370.9 311 58.8
Ah.05g178800 Amaranthus hybridus HOM05D007869 ORTHO05D009962 1.4e-96 357.1 301 58.8
AUR62023523 Chenopodium quinoa HOM05D007869 ORTHO05D009962 3.1e-96 355.9 313 55.6
AUR62004577 Chenopodium quinoa HOM05D007869 ORTHO05D009962 4.1e-96 355.5 313 56.2
Cfa003717 Carpinus fangiana HOM05D007869 ORTHO05D009962 1.5e-93 347.1 311 55.3
Haze_15765 Corylus avellana HOM05D007869 ORTHO05D009962 3.2e-93 345.9 311 55.3
TAR374G1227 Trochodendron aralioides HOM05D007869 ORTHO05D009962 2.1e-92 343.2 299 55.9
Atru.chr5.803 Acer truncatum HOM05D007869 ORTHO05D009962 2.7e-92 342.8 302 56.3
Prupe.2G203300 Prunus persica HOM05D007869 ORTHO05D009962 4.7e-92 342.0 285 57.5
CiPaw.02G045900 Carya illinoinensis HOM05D007869 ORTHO05D009962 8.8e-91 337.8 277 58.1
Ciclev10021277m.g Citrus clementina HOM05D007869 ORTHO05D009962 2.0e-90 336.7 294 56.8
RcHm_v2.0_Chr1g0361741 Rosa chinensis HOM05D007869 ORTHO05D009962 9.8e-90 334.3 286 55.2
FAN10G0101 Fragaria x ananassa HOM05D007869 ORTHO05D009962 6.3e-89 331.6 285 55.4
FAN03G1443 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.1e-88 330.9 285 55.1
FAN03G2169 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.1e-88 330.9 285 55.1
FAN06G2096 Fragaria x ananassa HOM05D007869 ORTHO05D009962 4.1e-88 328.9 285 55.1
Nn3g18755 Nelumbo nucifera HOM05D007869 ORTHO05D009962 1.2e-87 327.4 285 55.8
Thecc.01G330400 Theobroma cacao HOM05D007869 ORTHO05D009962 1.2e-87 327.4 285 56.1
Cpa.g.sc57.67 Carica papaya HOM05D007869 ORTHO05D009962 3.5e-87 325.9 286 54.5
Duzib138G0629 Durio zibethinus HOM05D007869 ORTHO05D009962 3.5e-87 325.9 278 56.8
Manes.05G005500 Manihot esculenta HOM05D007869 ORTHO05D009962 5.9e-87 325.1 281 53.7
CANSAT56G0171 Cannabis sativa HOM05D007869 ORTHO05D009962 7.7e-87 324.7 278 54.7
Potri.014G108300 Populus trichocarpa HOM05D007869 ORTHO05D009962 1.7e-86 323.6 287 54.7
Glyma.20G001800 Glycine max HOM05D007869 ORTHO05D009962 8.5e-86 321.2 298 53.7
VMungo0251G2255 Vigna mungo HOM05D007869 ORTHO05D009962 1.1e-85 320.9 279 55.2
Glyma.09G283900 Glycine max HOM05D007869 ORTHO05D009962 2.5e-85 319.7 281 54.8
TWI14G0946 Tripterygium wilfordii HOM05D007869 ORTHO05D009962 5.5e-85 318.5 304 51.6
Phvul.003G003700 Phaseolus vulgaris HOM05D007869 ORTHO05D009962 1.6e-84 317.0 296 53.4
Lalb_Chr17g0337801 Lupinus albus HOM05D007869 ORTHO05D009962 4.7e-84 315.5 294 50.7
Sabra14G0079800 Salix brachista HOM05D007869 ORTHO05D009962 1.0e-83 314.3 277 55.6
Lalb_Chr04g0258981 Lupinus albus HOM05D007869 ORTHO05D009962 4.0e-83 312.4 316 51.3
FAN06G3475 Fragaria x ananassa HOM05D007869 ORTHO05D009962 6.8e-83 311.6 272 55.1
TPR.G29782 Trifolium pratense HOM05D007869 ORTHO05D009962 2.0e-82 310.1 298 52.7
COL.COLO4_23074 Corchorus olitorius HOM05D007869 ORTHO05D009962 2.6e-82 309.7 281 53.4
Psat6g099760 Pisum sativum HOM05D007869 ORTHO05D009962 3.4e-82 309.3 281 52.7
Lj2g0022280 Lotus japonicus HOM05D007869 ORTHO05D009962 4.4e-82 308.9 282 53.5
Sabra02G0132700 Salix brachista HOM05D007869 ORTHO05D009962 1.3e-81 307.4 305 51.1
Medtr1g038260 Medicago truncatula HOM05D007869 ORTHO05D009962 2.2e-81 306.6 296 51.7
BraA10t42381Z Brassica rapa HOM05D007869 ORTHO05D009962 7.8e-79 298.1 290 50.3
Thhalv10009953m.g Eutrema salsugineum HOM05D007869 ORTHO05D009962 2.3e-78 296.6 289 51.6
BolC5t28887H Brassica oleracea HOM05D007869 ORTHO05D009962 3.8e-78 295.8 289 49.5
MBI04_g38990_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 2.5e-77 293.1 297 50.8
C05p01060 Brassica napus HOM05D007869 ORTHO05D009962 3.3e-77 292.7 289 48.8
THA.LOC104825914 Tarenaya hassleriana HOM05D007869 ORTHO05D009962 3.3e-77 292.7 280 51.4
A10p01030 Brassica napus HOM05D007869 ORTHO05D009962 1.6e-76 290.4 289 49.1
Sp1g01350 Schrenkiella parvula HOM05D007869 ORTHO05D009962 8.0e-76 288.1 284 50.0
BcaC05g24607 Brassica carinata HOM05D007869 ORTHO05D009962 1.0e-75 287.7 280 49.6
FAN01G2503 Fragaria x ananassa HOM05D007869 ORTHO05D009962 2.9e-73 279.6 232 57.3
CARHR001570 Cardamine hirsuta HOM05D007869 ORTHO05D009962 1.1e-72 277.7 285 47.0
FAN10G1242 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.1e-72 277.7 234 56.8
CsaV3_6G008420 Cucumis sativus L. HOM05D007869 ORTHO05D009962 1.8e-72 276.9 290 48.3
Aa31LG1G10230 Aethionema arabicum HOM05D007869 ORTHO05D009962 1.2e-71 274.2 298 47.0
Carub.0001s0129 Capsella rubella HOM05D007869 ORTHO05D009962 5.9e-71 271.9 289 46.7
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 1.0e-70 271.2 273 49.8
AT2G41610 Arabidopsis thaliana HOM05D007869 ORTHO05D009962 1.7e-70 270.4 282 47.9
Sed0016589 Sechium edule HOM05D007869 ORTHO05D009962 1.5e-69 267.3 280 46.1
FvH4_7g18090 Fragaria vesca HOM05D007869 ORTHO05D009962 5.6e-69 265.4 213 58.7
AL4G39680 Arabidopsis lyrata HOM05D007869 ORTHO05D009962 2.1e-68 263.5 285 47.0
MELO3C022297.2 Cucumis melo HOM05D007869 ORTHO05D009962 3.4e-66 256.1 279 46.6
arahy.Tifrunner.gnm1.ann1.2P25JP Arachis hypogaea HOM05D007869 ORTHO05D009962 1.3e-65 254.2 266 47.7
arahy.Tifrunner.gnm1.ann1.WBP5Q2 Arachis hypogaea HOM05D007869 ORTHO05D009962 2.9e-65 253.1 272 46.0
Actinidia28076 Actinidia chinensis HOM05D007869 ORTHO05D009962 1.1e-64 251.1 208 61.5
MBI04_g27772_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 1.4e-64 250.8 234 54.7
CSS0017560 Camellia sinensis var. sinensis HOM05D007869 ORTHO05D009962 5.4e-64 248.8 244 52.9
ATR0579G134 Amborella trichopoda HOM05D007869 ORTHO05D009962 6.0e-63 245.4 301 45.5
HPP92_007374 Vanilla planifolia HOM05D007869 ORTHO05D009962 2.5e-61 240.0 286 43.4
Zm00001eb398460 Zea mays HOM05D007869 ORTHO05D009962 5.6e-61 238.8 268 44.0
PSO384G3553 Papaver somniferum HOM05D007869 ORTHO05D009962 1.2e-60 237.7 333 42.3
Os03g0253600 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 2.8e-60 236.5 279 43.4
Zm00001eb010960 Zea mays HOM05D007869 ORTHO05D009962 6.2e-60 235.3 266 45.1
Medtr1g038290 Medicago truncatula HOM05D007869 ORTHO05D009962 8.1e-60 235.0 296 43.9
Os10g0200700 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 2.3e-59 233.4 244 48.0
PSO135G1025 Papaver somniferum HOM05D007869 ORTHO05D009962 5.8e-58 228.8 308 43.2
Lju170C22T1 Lonicera japonica HOM05D007869 ORTHO05D009962 1.9e-53 213.8 194 52.6
FvH4_7g18120 Fragaria vesca HOM05D007869 ORTHO05D009962 8.9e-51 204.9 156 62.2
Gorai.004G148700 Gossypium raimondii HOM05D007869 ORTHO05D009962 2.9e-49 199.9 187 52.4
Gohir.D08G144000 Gossypium hirsutum HOM05D007869 ORTHO05D009962 4.9e-49 199.1 187 52.4
Gohir.A08G122700 Gossypium hirsutum HOM05D007869 ORTHO05D009962 1.1e-48 198.0 187 51.9
Rhsim01G0181500 Rhododendron simsii HOM05D007869 ORTHO05D009962 5.4e-48 195.7 172 58.1
Dinv32655 Davidia involucrata HOM05D007869 ORTHO05D009962 4.5e-34 149.4 149 50.3
Duzib133G0538 Durio zibethinus HOM05D007869 ORTHO05D009962 5.5e-16 89.4 174 31.6
SEGI_25376 Sequoiadendron giganteum HOM05D007869 ORTHO05D009962 5.0e-09 66.2 142 35.2


User provided reference genes

Program Settings