Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0001930 Simmondsia chinensis HOM05D004912 ORTHO05D006144 2.1e-165 585.9 344 100.0
AUR62022650 Chenopodium quinoa HOM05D004912 ORTHO05D006144 1.9e-54 217.2 388 46.1
AUR62004613 Chenopodium quinoa HOM05D004912 ORTHO05D006144 2.5e-54 216.9 370 48.9
EL10Ac1g00125 Beta vulgaris HOM05D004912 ORTHO05D006144 5.6e-54 215.7 356 42.4
Ah.05g178460 Amaranthus hybridus HOM05D004912 ORTHO05D006144 6.2e-53 212.2 355 49.0
HanXRQChr09g0260131 Helianthus annuus HOM05D004912 ORTHO05D006144 1.1e-46 191.4 347 37.2
TAR628G1727 Trochodendron aralioides HOM05D004912 ORTHO05D006144 2.3e-44 183.7 395 36.5
Hund27105 Selenicereus undatus HOM05D004912 ORTHO05D006144 2.9e-42 176.8 367 36.0
Dinv41750 Davidia involucrata HOM05D004912 ORTHO05D006144 4.1e-41 172.9 388 36.3
Oeu051787.1 Olea europaea HOM05D004912 ORTHO05D006144 2.7e-40 170.2 339 44.0
Rhsim12G0007100 Rhododendron simsii HOM05D004912 ORTHO05D006144 7.8e-40 168.7 354 40.4
Cfa012942 Carpinus fangiana HOM05D004912 ORTHO05D006144 1.3e-39 167.9 396 39.6
arahy.Tifrunner.gnm1.ann1.9DDU7S Arachis hypogaea HOM05D004912 ORTHO05D006144 5.1e-39 166.0 356 36.8
arahy.Tifrunner.gnm1.ann1.NID8M3 Arachis hypogaea HOM05D004912 ORTHO05D006144 1.5e-38 164.5 356 37.1
Oeu059194.1 Olea europaea HOM05D004912 ORTHO05D006144 1.5e-38 164.5 340 36.2
Lsat_1_v5_gn_7_21041 Lactuca sativa HOM05D004912 ORTHO05D006144 1.9e-38 164.1 394 34.0
CiPaw.08G002400 Carya illinoinensis HOM05D004912 ORTHO05D006144 5.6e-38 162.5 406 34.7
Manes.18G104400 Manihot esculenta HOM05D004912 ORTHO05D006144 1.6e-37 161.0 385 38.4
COL.COLO4_05030 Corchorus olitorius HOM05D004912 ORTHO05D006144 2.8e-37 160.2 340 38.5
QL02p026125 Quercus lobata HOM05D004912 ORTHO05D006144 4.7e-37 159.5 401 37.4
CANSAT25G2909 Cannabis sativa HOM05D004912 ORTHO05D006144 3.1e-36 156.8 372 41.1
ClCG11G008550 Citrullus lanatus HOM05D004912 ORTHO05D006144 5.2e-36 156.0 337 36.5
PGSC0003DMG400031323 Solanum tuberosum HOM05D004912 ORTHO05D006144 6.8e-36 155.6 353 36.0
Peaxi162Scf00154g00016 Petunia axillaris HOM05D004912 ORTHO05D006144 2.0e-35 154.1 368 40.5
arahy.Tifrunner.gnm1.ann1.SX2JAI Arachis hypogaea HOM05D004912 ORTHO05D006144 3.4e-35 153.3 369 33.3
Eucgr.F04115 Eucalyptus grandis HOM05D004912 ORTHO05D006144 4.4e-35 152.9 387 37.7
Atru.chr13.2352 Acer truncatum HOM05D004912 ORTHO05D006144 5.8e-35 152.5 352 35.8
Lj3g0019671 Lotus japonicus HOM05D004912 ORTHO05D006144 7.6e-35 152.1 357 33.3
CDE06G1282 Ceratophyllum demersum HOM05D004912 ORTHO05D006144 1.3e-34 151.4 377 33.7
SGA_v2.0_scaffold118G32511 Striga asiatica HOM05D004912 ORTHO05D006144 6.4e-34 149.1 374 34.8
ClCG08G000690 Citrullus lanatus HOM05D004912 ORTHO05D006144 8.4e-34 148.7 345 36.8
Gohir.D13G123600 Gossypium hirsutum HOM05D004912 ORTHO05D006144 1.4e-33 147.9 396 37.6
Nn5g27542 Nelumbo nucifera HOM05D004912 ORTHO05D006144 1.4e-33 147.9 455 31.9
Peaxi162Scf00798g00322 Petunia axillaris HOM05D004912 ORTHO05D006144 1.4e-33 147.9 383 38.1
Cc10_g10040 Coffea canephora HOM05D004912 ORTHO05D006144 2.4e-33 147.1 352 44.0
arahy.Tifrunner.gnm1.ann1.Z6QD6J Arachis hypogaea HOM05D004912 ORTHO05D006144 5.4e-33 146.0 358 33.8
Nitab4.5_0006163g0010 Nicotiana tabacum HOM05D004912 ORTHO05D006144 5.4e-33 146.0 386 32.6
DCAR_014078 Daucus carota HOM05D004912 ORTHO05D006144 9.3e-33 145.2 409 33.3
Nitab4.5_0005750g0010 Nicotiana tabacum HOM05D004912 ORTHO05D006144 1.2e-32 144.8 419 31.3
Sopen06g023560 Solanum pennellii HOM05D004912 ORTHO05D006144 1.2e-32 144.8 360 38.1
GSVIVG01001769001 Vitis vinifera HOM05D004912 ORTHO05D006144 1.2e-32 144.8 341 39.0
Ciclev10001073m.g Citrus clementina HOM05D004912 ORTHO05D006144 3.5e-32 143.3 375 34.1
VMungo1127G0246 Vigna mungo HOM05D004912 ORTHO05D006144 6.0e-32 142.5 352 40.1
SalBow7G4664 Salvia bowleyana HOM05D004912 ORTHO05D006144 1.0e-31 141.7 357 39.2
Gohir.D05G275200 Gossypium hirsutum HOM05D004912 ORTHO05D006144 2.3e-31 140.6 344 34.9
Lj4A484T8 Lonicera japonica HOM05D004912 ORTHO05D006144 3.9e-31 139.8 470 31.9
Lalb_Chr19g0140481 Lupinus albus HOM05D004912 ORTHO05D006144 3.9e-31 139.8 393 38.4
Aa31LG4G8550 Aethionema arabicum HOM05D004912 ORTHO05D006144 8.7e-31 138.7 361 40.4
Manes.02G197100 Manihot esculenta HOM05D004912 ORTHO05D006144 8.7e-31 138.7 409 37.4
MELO3C022195.2 Cucumis melo HOM05D004912 ORTHO05D006144 1.1e-30 138.3 351 39.3
CARHR022970 Cardamine hirsuta HOM05D004912 ORTHO05D006144 1.9e-30 137.5 339 34.5
Ca_27514_v3 Cicer arietinum L. HOM05D004912 ORTHO05D006144 1.9e-30 137.5 359 37.9
HPP92_005696 Vanilla planifolia HOM05D004912 ORTHO05D006144 1.9e-30 137.5 331 37.8
Actinidia01557 Actinidia chinensis HOM05D004912 ORTHO05D006144 5.6e-30 136.0 413 38.3
Solyc06g065050.2 Solanum lycopersicum HOM05D004912 ORTHO05D006144 9.6e-30 135.2 353 33.7
Glyma.08G239400 Glycine max HOM05D004912 ORTHO05D006144 1.3e-29 134.8 357 32.2
Gohir.A13G119900 Gossypium hirsutum HOM05D004912 ORTHO05D006144 2.1e-29 134.0 396 39.1
ECA232G1825 Erigeron canadensis HOM05D004912 ORTHO05D006144 6.2e-29 132.5 416 30.0
Carub.0001s2211 Capsella rubella HOM05D004912 ORTHO05D006144 1.4e-28 131.3 348 34.5
AT1G22600 Arabidopsis thaliana HOM05D004912 ORTHO05D006144 2.4e-28 130.6 353 34.8
CsaV3_5G040180 Cucumis sativus L. HOM05D004912 ORTHO05D006144 3.1e-28 130.2 351 38.5
Zm00001eb422690 Zea mays HOM05D004912 ORTHO05D006144 5.3e-28 129.4 134 54.5
Glyma.12G001600 Glycine max HOM05D004912 ORTHO05D006144 6.9e-28 129.0 332 32.5
Prupe.1G554000 Prunus persica HOM05D004912 ORTHO05D006144 1.2e-27 128.3 402 33.8
ATR1134G033 Amborella trichopoda HOM05D004912 ORTHO05D006144 1.5e-27 127.9 392 29.8
Sp1g20090 Schrenkiella parvula HOM05D004912 ORTHO05D006144 1.5e-27 127.9 330 32.7
Gorai.013G138700 Gossypium raimondii HOM05D004912 ORTHO05D006144 2.6e-27 127.1 396 38.4
Migut.C01310 Erythranthe guttata HOM05D004912 ORTHO05D006144 4.5e-27 126.3 133 50.4
Lalb_Chr01g0000121 Lupinus albus HOM05D004912 ORTHO05D006144 7.6e-27 125.6 350 36.6
Rhsim11G0053200 Rhododendron simsii HOM05D004912 ORTHO05D006144 7.6e-27 125.6 134 54.5
unitig_32.g11185 Utricularia gibba HOM05D004912 ORTHO05D006144 1.3e-26 124.8 328 39.0
unitig_748.g7733 Utricularia gibba HOM05D004912 ORTHO05D006144 1.7e-26 124.4 325 38.2
Sed0022690 Sechium edule HOM05D004912 ORTHO05D006144 2.2e-26 124.0 338 39.9
TWI23G1256 Tripterygium wilfordii HOM05D004912 ORTHO05D006144 4.9e-26 122.9 421 36.8
Hma1.2p1_0009F.1_g005990 Hydrangea macrophylla HOM05D004912 ORTHO05D006144 2.4e-25 120.6 342 32.7
Haze_21297 Corylus avellana HOM05D004912 ORTHO05D006144 7.1e-25 119.0 121 56.2
Phvul.011G001700 Phaseolus vulgaris HOM05D004912 ORTHO05D006144 9.3e-25 118.6 354 29.7
MBI17_g01791_MAGBIO Magnolia biondii HOM05D004912 ORTHO05D006144 3.5e-24 116.7 135 51.1
PGR102G1759 Punica granatum HOM05D004912 ORTHO05D006144 3.5e-24 116.7 399 37.3
Sabra13G0093000 Salix brachista HOM05D004912 ORTHO05D006144 3.5e-24 116.7 395 39.0
CAN.G308.42 Capsicum annuum HOM05D004912 ORTHO05D006144 6.0e-24 115.9 344 35.5
Medtr4g033230 Medicago truncatula HOM05D004912 ORTHO05D006144 1.0e-23 115.2 365 34.8
Medtr4g033265 Medicago truncatula HOM05D004912 ORTHO05D006144 1.0e-23 115.2 365 34.8
Migut.N03366 Erythranthe guttata HOM05D004912 ORTHO05D006144 1.7e-23 114.4 331 31.1
TPR.G312 Trifolium pratense HOM05D004912 ORTHO05D006144 3.0e-23 113.6 367 37.9
AL1G36130 Arabidopsis lyrata HOM05D004912 ORTHO05D006144 5.1e-23 112.8 349 33.0
Nitab4.5_0001378g0010 Nicotiana tabacum HOM05D004912 ORTHO05D006144 6.6e-23 112.5 369 38.2
Nitab4.5_0007332g0020 Nicotiana tabacum HOM05D004912 ORTHO05D006144 6.6e-23 112.5 126 50.0
PGSC0003DMG400031411 Solanum tuberosum HOM05D004912 ORTHO05D006144 6.6e-23 112.5 134 49.3
FAN04G2666 Fragaria x ananassa HOM05D004912 ORTHO05D006144 1.9e-22 110.9 476 31.5
A07p14290 Brassica napus HOM05D004912 ORTHO05D006144 2.5e-22 110.5 327 30.9
BraA07t29186Z Brassica rapa HOM05D004912 ORTHO05D006144 2.5e-22 110.5 327 30.9
CDE08G1543 Ceratophyllum demersum HOM05D004912 ORTHO05D006144 3.3e-22 110.2 364 34.3
Carub.0002s1888 Capsella rubella HOM05D004912 ORTHO05D006144 4.3e-22 109.8 395 36.7
MD15G1407700 Malus domestica HOM05D004912 ORTHO05D006144 4.3e-22 109.8 426 34.0
GSVIVG01001772001 Vitis vinifera HOM05D004912 ORTHO05D006144 5.6e-22 109.4 220 35.0
Aqoxy6G00063 Aquilegia oxysepala HOM05D004912 ORTHO05D006144 7.4e-22 109.0 131 48.1
Cpa.g.sc66.6 Carica papaya HOM05D004912 ORTHO05D006144 2.1e-21 107.5 123 48.8
FvH4_5g31970 Fragaria vesca HOM05D004912 ORTHO05D006144 2.1e-21 107.5 476 32.4
RcHm_v2.0_Chr7g0227991 Rosa chinensis HOM05D004912 ORTHO05D006144 2.1e-21 107.5 477 31.2
BcaB03g14195 Brassica carinata HOM05D004912 ORTHO05D006144 6.2e-21 105.9 325 30.2
Thhalv10018523m.g Eutrema salsugineum HOM05D004912 ORTHO05D006144 6.2e-21 105.9 393 36.1
CAN.G635.17 Capsicum annuum HOM05D004912 ORTHO05D006144 1.4e-20 104.8 121 48.8
Sopen11g011640 Solanum pennellii HOM05D004912 ORTHO05D006144 1.4e-20 104.8 121 47.9
Solyc11g022530.3 Solanum lycopersicum HOM05D004912 ORTHO05D006144 2.4e-20 104.0 104 52.9
TAR376G1051 Trochodendron aralioides HOM05D004912 ORTHO05D006144 4.0e-20 103.2 102 52.9
CSS0047311 Camellia sinensis var. sinensis HOM05D004912 ORTHO05D006144 6.9e-20 102.4 103 56.3
BcaC06g34978 Brassica carinata HOM05D004912 ORTHO05D006144 1.5e-19 101.3 328 29.3
C07p21010 Brassica napus HOM05D004912 ORTHO05D006144 2.6e-19 100.5 328 29.0
FAN18G2258 Fragaria x ananassa HOM05D004912 ORTHO05D006144 4.5e-19 99.8 476 31.3
HanXRQChr11g0326311 Helianthus annuus HOM05D004912 ORTHO05D006144 7.6e-19 99.0 139 40.3
vmacro00991 Vaccinium macrocarpon HOM05D004912 ORTHO05D006144 7.6e-19 99.0 192 39.6
BolC7t42633H Brassica oleracea HOM05D004912 ORTHO05D006144 1.3e-18 98.2 329 29.2
A02p17660 Brassica napus HOM05D004912 ORTHO05D006144 1.7e-18 97.8 397 35.0
BraA02t06813Z Brassica rapa HOM05D004912 ORTHO05D006144 1.7e-18 97.8 397 35.0
AT1G72100 Arabidopsis thaliana HOM05D004912 ORTHO05D006144 1.4e-17 94.7 108 50.9
HPP92_005686 Vanilla planifolia HOM05D004912 ORTHO05D006144 3.2e-17 93.6 104 46.2
BcaC03g15331 Brassica carinata HOM05D004912 ORTHO05D006144 7.1e-17 92.4 399 35.3
C02p29360 Brassica napus HOM05D004912 ORTHO05D006144 7.1e-17 92.4 399 35.3
BolC2t08987H Brassica oleracea HOM05D004912 ORTHO05D006144 7.1e-17 92.4 399 35.3
CARHR064910 Cardamine hirsuta HOM05D004912 ORTHO05D006144 9.3e-17 92.0 108 50.0
Migut.C01311 Erythranthe guttata HOM05D004912 ORTHO05D006144 4.6e-16 89.7 174 37.4
THA.LOC104800129 Tarenaya hassleriana HOM05D004912 ORTHO05D006144 6.0e-16 89.4 438 33.3
Sp5g27160 Schrenkiella parvula HOM05D004912 ORTHO05D006144 1.8e-15 87.8 402 34.1
PGSC0003DMG400031324 Solanum tuberosum HOM05D004912 ORTHO05D006144 3.0e-15 87.0 103 44.7
SEGI_22716 Sequoiadendron giganteum HOM05D004912 ORTHO05D006144 3.9e-15 86.7 134 38.8
Psat7g146280 Pisum sativum HOM05D004912 ORTHO05D006144 8.7e-15 85.5 363 36.6
Lsat_1_v5_gn_5_118600 Lactuca sativa HOM05D004912 ORTHO05D006144 1.5e-14 84.7 100 45.0
BcaB05g24704 Brassica carinata HOM05D004912 ORTHO05D006144 3.3e-14 83.6 388 34.3
Thhalv10008247m.g Eutrema salsugineum HOM05D004912 ORTHO05D006144 3.3e-14 83.6 308 28.9
ECA247G4121 Erigeron canadensis HOM05D004912 ORTHO05D006144 4.3e-14 83.2 375 26.7
SGA_v2.0_scaffold19G08943 Striga asiatica HOM05D004912 ORTHO05D006144 4.3e-14 83.2 332 34.9
DCAR_024339 Daucus carota HOM05D004912 ORTHO05D006144 5.6e-14 82.8 419 26.7
AL2G31720 Arabidopsis lyrata HOM05D004912 ORTHO05D006144 9.6e-14 82.0 406 33.3
Lsat_1_v5_gn_1_26081 Lactuca sativa HOM05D004912 ORTHO05D006144 2.1e-13 80.9 365 26.6
Aa31LG7G6480 Aethionema arabicum HOM05D004912 ORTHO05D006144 2.4e-12 77.4 106 44.3
Psat7g146200 Pisum sativum HOM05D004912 ORTHO05D006144 4.5e-11 73.2 135 39.3
Mapoly0029s0129 Marchantia polymorpha HOM05D004395 ORTHO05D005234 3.8e-10 70.1 93 41.9
CBR_g50787 Chara braunii HOM05D004395 ORTHO05D005234 4.2e-09 66.6 110 38.2
SMO118G0438 Selaginella moellendorffii HOM05D004395 ORTHO05D005234 2.1e-08 64.3 93 38.7
Ca_10293_v3 Cicer arietinum L. HOM05D004395 ORTHO05D005234 3.5e-08 63.5 124 35.5
Ca_30262_v3 Cicer arietinum L. HOM05D004395 ORTHO05D005234 3.5e-08 63.5 124 35.5
Psat6g162440 Pisum sativum HOM05D004395 ORTHO05D005234 1.3e-07 61.6 124 34.7
SMO367G0059 Selaginella moellendorffii HOM05D004395 ORTHO05D005234 1.3e-07 61.6 107 38.3
Medtr1g087320 Medicago truncatula HOM05D004395 ORTHO05D005234 2.3e-07 60.8 124 34.7
Pp3c4_18020 Physcomitrium patens HOM05D004395 ORTHO05D005234 2.3e-07 60.8 104 35.6
Pp3c4_23110 Physcomitrium patens HOM05D004395 ORTHO05D005234 3.0e-07 60.5 106 36.8
FAN18G1082 Fragaria x ananassa HOM05D004395 ORTHO05D005234 6.7e-07 59.3 120 35.8
VMungo0720G1854 Vigna mungo HOM05D004395 ORTHO05D005234 6.7e-07 59.3 120 34.2
Glyma.10G014200 Glycine max HOM05D004395 ORTHO05D005234 1.1e-06 58.5 120 35.0
PGR042G2891 Punica granatum HOM05D004912 ORTHO05D006144 1.1e-06 58.5 86 40.7
TPR.G19763 Trifolium pratense HOM05D004395 ORTHO05D005234 1.1e-06 58.5 129 32.6
FAN04G0288 Fragaria x ananassa HOM05D004395 ORTHO05D005234 1.5e-06 58.2 120 35.0
FAN13G1316 Fragaria x ananassa HOM05D004395 ORTHO05D005234 1.5e-06 58.2 120 35.0
FvH4_5g39460 Fragaria vesca HOM05D004395 ORTHO05D005234 1.9e-06 57.8 125 36.0
FAN08G2141 Fragaria x ananassa HOM05D004395 ORTHO05D005234 1.9e-06 57.8 125 36.0
Manes.01G226500 Manihot esculenta HOM05D004395 ORTHO05D005234 2.5e-06 57.4 121 35.5
SEGI_05878 Sequoiadendron giganteum HOM05D004395 ORTHO05D005234 2.5e-06 57.4 130 31.5
TAR633G1754 Trochodendron aralioides HOM05D004395 ORTHO05D005234 2.5e-06 57.4 129 34.1
TAR633G1975 Trochodendron aralioides HOM05D004395 ORTHO05D005234 2.5e-06 57.4 129 34.1
CiPaw.07G115900 Carya illinoinensis HOM05D004395 ORTHO05D005234 3.3e-06 57.0 124 33.9
Dinv33105 Davidia involucrata HOM05D004395 ORTHO05D005234 3.3e-06 57.0 122 36.1
Lj5g0013155 Lotus japonicus HOM05D004395 ORTHO05D005234 3.3e-06 57.0 119 31.9
MBI18_g28456_MAGBIO Magnolia biondii HOM05D004395 ORTHO05D005234 3.3e-06 57.0 124 34.7
Phvul.007G215400 Phaseolus vulgaris HOM05D004395 ORTHO05D005234 3.3e-06 57.0 120 35.0
Rhsim11G0053700 Rhododendron simsii HOM05D004912 ORTHO05D006144 3.3e-06 57.0 114 40.4
AagrBONN_evm.TU.Sc2ySwM_228.1722 Anthoceros agrestis HOM05D004395 ORTHO05D005234 5.7e-06 56.2 105 34.3
Dinv33106 Davidia involucrata HOM05D004395 ORTHO05D005234 5.7e-06 56.2 122 36.1
CSS0011400 Camellia sinensis var. sinensis HOM05D004395 ORTHO05D005234 7.4e-06 55.8 120 34.2
CSS0015284 Camellia sinensis var. sinensis HOM05D004395 ORTHO05D005234 7.4e-06 55.8 120 34.2
Lalb_Chr02g0146721 Lupinus albus HOM05D004395 ORTHO05D005234 7.4e-06 55.8 122 33.6
Prupe.8G270400 Prunus persica HOM05D004395 ORTHO05D005234 7.4e-06 55.8 130 33.8
TWI18G0814 Tripterygium wilfordii HOM05D004395 ORTHO05D005234 7.4e-06 55.8 125 32.8
unitig_0.g274 Utricularia gibba HOM05D004395 ORTHO05D005234 7.4e-06 55.8 129 33.3
Cfa005822 Carpinus fangiana HOM05D004395 ORTHO05D005234 9.6e-06 55.5 125 34.4
RcHm_v2.0_Chr7g0241771 Rosa chinensis HOM05D004395 ORTHO05D005234 9.6e-06 55.5 125 35.2


User provided reference genes

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