Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0001860 Simmondsia chinensis HOM05D004752 ORTHO05D005523 6.4e-48 193.7 97 100.0
Sc23g0001310 Simmondsia chinensis HOM05D004752 ORTHO05D005523 2.7e-38 161.8 97 79.4
Dinv41721 Davidia involucrata HOM05D004752 ORTHO05D005523 2.4e-31 138.7 99 71.7
Hund27095 Selenicereus undatus HOM05D004752 ORTHO05D005523 2.4e-31 138.7 97 71.1
Gohir.A05G250100 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.6e-30 136.0 97 71.1
Potri.019G081700 Populus trichocarpa HOM05D004752 ORTHO05D005523 1.6e-30 136.0 97 69.1
Gohir.D05G251900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 3.5e-30 134.8 97 70.1
Gohir.D05G253600 Gossypium hirsutum HOM05D004752 ORTHO05D005523 3.5e-30 134.8 97 70.1
Gorai.009G263300 Gossypium raimondii HOM05D004752 ORTHO05D005523 3.5e-30 134.8 97 70.1
Gorai.009G263400 Gossypium raimondii HOM05D004752 ORTHO05D005523 3.5e-30 134.8 97 70.1
Duzib211G0386 Durio zibethinus HOM05D004752 ORTHO05D005523 4.6e-30 134.4 99 70.7
Migut.C01286 Erythranthe guttata HOM05D004752 ORTHO05D005523 1.0e-29 133.3 97 69.1
Gohir.A05G250200 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.0e-29 133.3 97 70.1
CSS0011118 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 1.8e-29 132.5 99 68.7
CSS0018537 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 1.8e-29 132.5 99 68.7
Thecc.08G186100 Theobroma cacao HOM05D004752 ORTHO05D005523 1.8e-29 132.5 99 69.7
SalBow6G5456 Salvia bowleyana HOM05D004752 ORTHO05D005523 2.3e-29 132.1 97 67.0
SalBow6G7070 Salvia bowleyana HOM05D004752 ORTHO05D005523 2.3e-29 132.1 97 67.0
COL.COLO4_34528 Corchorus olitorius HOM05D004752 ORTHO05D005523 3.0e-29 131.7 99 68.7
Nitab4.5_0000303g0280 Nicotiana tabacum HOM05D004752 ORTHO05D005523 5.1e-29 131.0 97 66.0
Nitab4.5_0001082g0040 Nicotiana tabacum HOM05D004752 ORTHO05D005523 5.1e-29 131.0 97 66.0
Lj6g0009552 Lotus japonicus HOM05D004752 ORTHO05D005523 8.7e-29 130.2 97 70.1
Actinidia29420 Actinidia chinensis HOM05D004752 ORTHO05D005523 1.1e-28 129.8 97 64.9
AUR62022705 Chenopodium quinoa HOM05D004752 ORTHO05D005523 1.5e-28 129.4 95 66.3
Peaxi162Scf00268g00615 Petunia axillaris HOM05D004752 ORTHO05D005523 1.5e-28 129.4 97 67.0
Potri.013G110600 Populus trichocarpa HOM05D004752 ORTHO05D005523 1.9e-28 129.0 99 68.7
QL12p035384 Quercus lobata HOM05D004752 ORTHO05D005523 1.9e-28 129.0 95 70.5
vmacro00760 Vaccinium macrocarpon HOM05D004752 ORTHO05D005523 1.9e-28 129.0 98 67.3
Rhsim06G0089000 Rhododendron simsii HOM05D004752 ORTHO05D005523 2.5e-28 128.6 98 67.3
Rhsim11G0057800 Rhododendron simsii HOM05D004752 ORTHO05D005523 2.5e-28 128.6 98 67.3
Duzib177G0553 Durio zibethinus HOM05D004752 ORTHO05D005523 3.3e-28 128.3 99 66.7
TAR628G0740 Trochodendron aralioides HOM05D004752 ORTHO05D005523 4.3e-28 127.9 97 71.1
Atru.chr13.2410 Acer truncatum HOM05D004752 ORTHO05D005523 7.4e-28 127.1 97 70.1
SalBow6G5891 Salvia bowleyana HOM05D004752 ORTHO05D005523 7.4e-28 127.1 94 67.0
Cc00_g06570 Coffea canephora HOM05D004752 ORTHO05D005523 9.6e-28 126.7 99 65.7
PGR042G3757 Punica granatum HOM05D004752 ORTHO05D005523 1.3e-27 126.3 99 67.7
PGSC0003DMG400026069 Solanum tuberosum HOM05D004752 ORTHO05D005523 1.3e-27 126.3 97 67.0
BcaB03g14924 Brassica carinata HOM05D004752 ORTHO05D005523 1.6e-27 125.9 97 67.0
BcaC08g46647 Brassica carinata HOM05D004752 ORTHO05D005523 1.6e-27 125.9 97 67.0
BcaC08g46649 Brassica carinata HOM05D004752 ORTHO05D005523 1.6e-27 125.9 97 67.0
BcaC08g46651 Brassica carinata HOM05D004752 ORTHO05D005523 1.6e-27 125.9 97 67.0
BcaC08g46652 Brassica carinata HOM05D004752 ORTHO05D005523 1.6e-27 125.9 97 67.0
C06p35220 Brassica napus HOM05D004752 ORTHO05D005523 1.6e-27 125.9 97 67.0
Ciclev10002954m.g Citrus clementina HOM05D004752 ORTHO05D005523 1.6e-27 125.9 97 72.2
EL10Ac1g00098 Beta vulgaris HOM05D004752 ORTHO05D005523 2.1e-27 125.6 97 63.9
BcaC03g15326 Brassica carinata HOM05D004752 ORTHO05D005523 2.8e-27 125.2 97 67.0
A02p17630 Brassica napus HOM05D004752 ORTHO05D005523 2.8e-27 125.2 97 67.0
C02p29310 Brassica napus HOM05D004752 ORTHO05D005523 2.8e-27 125.2 97 67.0
BolC2t08982H Brassica oleracea HOM05D004752 ORTHO05D005523 2.8e-27 125.2 97 67.0
BolC6t38628H Brassica oleracea HOM05D004752 ORTHO05D005523 2.8e-27 125.2 97 67.0
BraA02t06809Z Brassica rapa HOM05D004752 ORTHO05D005523 2.8e-27 125.2 97 67.0
Lj5g0024701 Lotus japonicus HOM05D004752 ORTHO05D005523 2.8e-27 125.2 96 66.7
BcaB05g24700 Brassica carinata HOM05D004752 ORTHO05D005523 3.7e-27 124.8 97 67.0
C06p46120 Brassica napus HOM05D004752 ORTHO05D005523 3.7e-27 124.8 97 66.0
BolC6t39665H Brassica oleracea HOM05D004752 ORTHO05D005523 3.7e-27 124.8 97 66.0
AUR62004632 Chenopodium quinoa HOM05D004752 ORTHO05D005523 3.7e-27 124.8 106 58.5
Sp5g27090 Schrenkiella parvula HOM05D004752 ORTHO05D005523 3.7e-27 124.8 97 66.0
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 4.8e-27 124.4 97 63.9
BraA07t31385Z Brassica rapa HOM05D004752 ORTHO05D005523 4.8e-27 124.4 97 66.0
Glyma.20G068500 Glycine max HOM05D004752 ORTHO05D005523 4.8e-27 124.4 96 65.6
BcaB03g15640 Brassica carinata HOM05D004752 ORTHO05D005523 6.2e-27 124.0 98 68.4
BcaC08g45743 Brassica carinata HOM05D004752 ORTHO05D005523 6.2e-27 124.0 97 67.0
Medtr1g048960 Medicago truncatula HOM05D004752 ORTHO05D005523 6.2e-27 124.0 97 67.0
A07p30460 Brassica napus HOM05D004752 ORTHO05D005523 8.1e-27 123.6 98 66.3
Manes.02G194400 Manihot esculenta HOM05D004752 ORTHO05D005523 8.1e-27 123.6 97 67.0
Thhalv10019369m.g Eutrema salsugineum HOM05D004752 ORTHO05D005523 1.1e-26 123.2 97 64.9
Gohir.D09G112900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.1e-26 123.2 99 61.6
CsaV3_2G033590 Cucumis sativus L. HOM05D004752 ORTHO05D005523 1.4e-26 122.9 98 64.3
Prupe.1G506700 Prunus persica HOM05D004752 ORTHO05D005523 1.4e-26 122.9 97 67.0
MSTRG.1541 Avicennia marina HOM05D004752 ORTHO05D005523 1.8e-26 122.5 97 63.9
Glyma.10G117300 Glycine max HOM05D004752 ORTHO05D005523 1.8e-26 122.5 89 69.7
ClCG09G009960 Citrullus lanatus HOM05D004752 ORTHO05D005523 2.4e-26 122.1 95 67.4
TPR.G20783 Trifolium pratense HOM05D004752 ORTHO05D005523 2.4e-26 122.1 97 66.0
TWI59G0745 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 2.4e-26 122.1 98 66.3
A07p38200 Brassica napus HOM05D004752 ORTHO05D005523 3.1e-26 121.7 97 62.9
CiPaw.05G229600 Carya illinoinensis HOM05D004752 ORTHO05D005523 3.1e-26 121.7 97 67.0
Lalb_Chr19g0129031 Lupinus albus HOM05D004752 ORTHO05D005523 3.1e-26 121.7 96 68.8
Sabra19G0093300 Salix brachista HOM05D004752 ORTHO05D005523 3.1e-26 121.7 76 76.3
BraA07t30682Z Brassica rapa HOM05D004752 ORTHO05D005523 4.0e-26 121.3 98 65.3
Manes.18G103200 Manihot esculenta HOM05D004752 ORTHO05D005523 4.0e-26 121.3 99 63.6
Nitab4.5_0000365g0250 Nicotiana tabacum HOM05D004752 ORTHO05D005523 4.0e-26 121.3 93 65.6
CARHR064830 Cardamine hirsuta HOM05D004752 ORTHO05D005523 5.3e-26 120.9 97 63.9
THA.LOC104809736 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 5.3e-26 120.9 97 66.0
Gohir.D09G112701 Gossypium hirsutum HOM05D004752 ORTHO05D005523 6.9e-26 120.6 97 60.8
Lalb_Chr03g0036521 Lupinus albus HOM05D004752 ORTHO05D005523 6.9e-26 120.6 97 64.9
CiPaw.06G024200 Carya illinoinensis HOM05D004752 ORTHO05D005523 9.0e-26 120.2 97 64.9
Gorai.006G130300 Gossypium raimondii HOM05D004752 ORTHO05D005523 9.0e-26 120.2 99 59.6
Aa31LG4G8590 Aethionema arabicum HOM05D004752 ORTHO05D005523 1.2e-25 119.8 97 62.9
Carub.0002s1880 Capsella rubella HOM05D004752 ORTHO05D005523 1.2e-25 119.8 97 63.9
TAR381G0821 Trochodendron aralioides HOM05D004752 ORTHO05D005523 1.2e-25 119.8 97 66.0
MELO3C008132.2 Cucumis melo HOM05D004752 ORTHO05D005523 1.5e-25 119.4 98 63.3
TWI14G1278 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 1.5e-25 119.4 98 64.3
CANSAT80G1056 Cannabis sativa HOM05D004752 ORTHO05D005523 4.5e-25 117.9 100 64.0
PGSC0003DMG400009277 Solanum tuberosum HOM05D004752 ORTHO05D005523 5.8e-25 117.5 93 66.7
Actinidia03509 Actinidia chinensis HOM05D004752 ORTHO05D005523 7.6e-25 117.1 93 63.4
arahy.Tifrunner.gnm1.ann1.S21HCY Arachis hypogaea HOM05D004752 ORTHO05D005523 7.6e-25 117.1 97 67.0
MD00G1104100 Malus domestica HOM05D004752 ORTHO05D005523 7.6e-25 117.1 97 66.0
Nitab4.5_0003010g0020 Nicotiana tabacum HOM05D004752 ORTHO05D005523 7.6e-25 117.1 93 65.6
arahy.Tifrunner.gnm1.ann1.0CG85F Arachis hypogaea HOM05D004752 ORTHO05D005523 9.9e-25 116.7 97 67.0
Phvul.007G240400 Phaseolus vulgaris HOM05D004752 ORTHO05D005523 9.9e-25 116.7 96 66.7
Aqoxy5G02666 Aquilegia oxysepala HOM05D004752 ORTHO05D005523 1.3e-24 116.3 101 62.4
DCAR_011527 Daucus carota HOM05D004752 ORTHO05D005523 1.3e-24 116.3 97 60.8
Eucgr.F02586 Eucalyptus grandis HOM05D004752 ORTHO05D005523 1.3e-24 116.3 96 66.7
FvH4_5g38800 Fragaria vesca HOM05D004752 ORTHO05D005523 1.3e-24 116.3 97 60.8
FAN18G0635 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.3e-24 116.3 97 60.8
Lj4E474T0 Lonicera japonica HOM05D004752 ORTHO05D005523 1.7e-24 115.9 97 63.9
Sopen06g023680 Solanum pennellii HOM05D004752 ORTHO05D005523 1.7e-24 115.9 97 61.9
Peaxi162Scf00391g00436 Petunia axillaris HOM05D004752 ORTHO05D005523 2.2e-24 115.5 93 64.5
Solyc06g065180.3 Solanum lycopersicum HOM05D004752 ORTHO05D005523 2.2e-24 115.5 97 61.9
Lalb_Chr01g0010501 Lupinus albus HOM05D004752 ORTHO05D005523 2.9e-24 115.2 97 61.9
MSTRG.25459 Avicennia marina HOM05D004752 ORTHO05D005523 3.8e-24 114.8 98 61.2
FAN04G0063 Fragaria x ananassa HOM05D004752 ORTHO05D005523 3.8e-24 114.8 97 59.8
HanXRQChr04g0109661 Helianthus annuus HOM05D004752 ORTHO05D005523 3.8e-24 114.8 97 61.9
RcHm_v2.0_Chr7g0240801 Rosa chinensis HOM05D004752 ORTHO05D005523 3.8e-24 114.8 97 59.8
SalBow6G0286 Salvia bowleyana HOM05D004752 ORTHO05D005523 3.8e-24 114.8 74 71.6
FAN08G2110 Fragaria x ananassa HOM05D004752 ORTHO05D005523 4.9e-24 114.4 97 59.8
FAN13G0652 Fragaria x ananassa HOM05D004752 ORTHO05D005523 4.9e-24 114.4 97 59.8
THA.LOC104816385 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 6.4e-24 114.0 97 60.8
PGR102G0675 Punica granatum HOM05D004752 ORTHO05D005523 8.4e-24 113.6 101 62.4
Nn5g27610 Nelumbo nucifera HOM05D004752 ORTHO05D005523 1.1e-23 113.2 99 64.6
Ca_21523_v3 Cicer arietinum L. HOM05D004752 ORTHO05D005523 3.2e-23 111.7 96 63.5
PSO170G1458 Papaver somniferum HOM05D004752 ORTHO05D005523 4.2e-23 111.3 98 62.2
AL2G31650 Arabidopsis lyrata HOM05D004752 ORTHO05D005523 5.5e-23 110.9 98 63.3
VMungo0720G2181 Vigna mungo HOM05D004752 ORTHO05D005523 5.5e-23 110.9 119 52.9
Duzib177G0197 Durio zibethinus HOM05D004752 ORTHO05D005523 7.1e-23 110.5 99 58.6
PSO782G1292 Papaver somniferum HOM05D004752 ORTHO05D005523 7.1e-23 110.5 98 62.2
Sed0006132 Sechium edule HOM05D004752 ORTHO05D005523 7.1e-23 110.5 98 59.2
Rhsim11G0056800 Rhododendron simsii HOM05D004752 ORTHO05D005523 1.6e-22 109.4 121 52.1
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 1.6e-22 109.4 126 50.0
Os04g0432600 Oryza sativa ssp. japonica HOM05D004752 ORTHO05D005523 2.1e-22 109.0 97 59.8
ECA247G0381 Erigeron canadensis HOM05D004752 ORTHO05D005523 2.7e-22 108.6 97 58.8
AT1G72020 Arabidopsis thaliana HOM05D004752 ORTHO05D005523 3.5e-22 108.2 98 61.2
Lsat_1_v5_gn_1_12481 Lactuca sativa HOM05D004752 ORTHO05D005523 4.6e-22 107.8 96 56.2
Zm00001eb082670 Zea mays HOM05D004752 ORTHO05D005523 4.6e-22 107.8 76 68.4
ATR0071G025 Amborella trichopoda HOM05D004752 ORTHO05D005523 6.0e-22 107.5 76 69.7
MD15G1358900 Malus domestica HOM05D004752 ORTHO05D005523 1.0e-21 106.7 97 59.8
unitig_0.g2130 Utricularia gibba HOM05D004752 ORTHO05D005523 1.0e-21 106.7 88 61.4
CDE04G0573 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 5.1e-21 104.4 70 71.4
GSVIVG01012767001 Vitis vinifera HOM05D004752 ORTHO05D005523 6.7e-21 104.0 107 56.1
CDE07G1886 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 8.7e-21 103.6 97 57.7
FAN02G3062 Fragaria x ananassa HOM05D004752 ORTHO05D005523 3.3e-20 101.7 82 62.2
FAN18G0607 Fragaria x ananassa HOM05D004752 ORTHO05D005523 2.1e-19 99.0 74 64.9
FAN18G1874 Fragaria x ananassa HOM05D004752 ORTHO05D005523 2.1e-19 99.0 74 64.9
FAN18G2073 Fragaria x ananassa HOM05D004752 ORTHO05D005523 2.1e-19 99.0 74 64.9
MBI17_g21481_MAGBIO Magnolia biondii HOM05D004752 ORTHO05D005523 2.1e-19 99.0 70 70.0
Zm00001eb243470 Zea mays HOM05D004752 ORTHO05D005523 4.8e-19 97.8 94 53.2
HPP92_000079 Vanilla planifolia HOM05D004752 ORTHO05D005523 1.8e-18 95.9 61 70.5
SHI09031 Sapria himalayana HOM05D004752 ORTHO05D005523 1.2e-17 93.2 61 65.6
unitig_747.g21474 Utricularia gibba HOM05D004752 ORTHO05D005523 3.4e-17 91.7 61 68.9
Gohir.A09G115700 Gossypium hirsutum HOM05D004752 ORTHO05D005523 5.8e-17 90.9 63 63.5
SEGI_26065 Sequoiadendron giganteum HOM05D004752 ORTHO05D005523 7.6e-17 90.5 87 51.7
AagrBONN_evm.TU.Sc2ySwM_117.1418 Anthoceros agrestis HOM05D004752 ORTHO05D005523 8.5e-08 60.5 82 37.8
CBR_g3658 Chara braunii HOM05D004752 ORTHO05D005523 3.2e-07 58.5 77 40.3
Mapoly0001s0236 Marchantia polymorpha HOM05D004752 ORTHO05D005523 2.7e-06 55.5 86 38.4


User provided reference genes

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