Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0001240 Simmondsia chinensis HOM05D007294 ORTHO05D009205 1.3e-70 269.6 139 100.0
Hund16850 Selenicereus undatus HOM05D007294 ORTHO05D009205 2.3e-38 162.5 147 61.9
CSS0025261 Camellia sinensis var. sinensis HOM05D007294 ORTHO05D009205 5.0e-38 161.4 128 65.6
TWI36G0375 Tripterygium wilfordii HOM05D007294 ORTHO05D009205 9.5e-37 157.1 145 60.7
Actinidia23070 Actinidia chinensis HOM05D007294 ORTHO05D009205 1.6e-36 156.4 131 61.8
CiPaw.06G028900 Carya illinoinensis HOM05D007294 ORTHO05D009205 3.6e-36 155.2 137 60.6
Lsat_1_v5_gn_6_112740 Lactuca sativa HOM05D007294 ORTHO05D009205 6.2e-36 154.5 124 63.7
Sabra02G0066700 Salix brachista HOM05D007294 ORTHO05D009205 6.2e-36 154.5 125 68.0
HanXRQChr05g0151051 Helianthus annuus HOM05D007294 ORTHO05D009205 8.1e-36 154.1 143 58.7
Hma1.2p1_0186F.1_g081585 Hydrangea macrophylla HOM05D007294 ORTHO05D009205 1.1e-35 153.7 131 62.6
RcHm_v2.0_Chr6g0295521 Rosa chinensis HOM05D007294 ORTHO05D009205 1.4e-35 153.3 121 64.5
TAR628G0157 Trochodendron aralioides HOM05D007294 ORTHO05D009205 1.4e-35 153.3 128 60.9
GSVIVG01008891001 Vitis vinifera HOM05D007294 ORTHO05D009205 1.4e-35 153.3 124 63.7
CsaV3_4G028350 Cucumis sativus L. HOM05D007294 ORTHO05D009205 1.8e-35 152.9 141 61.7
MELO3C010470.2 Cucumis melo HOM05D007294 ORTHO05D009205 2.3e-35 152.5 132 66.7
Dinv27334 Davidia involucrata HOM05D007294 ORTHO05D009205 3.1e-35 152.1 131 61.8
Lalb_Chr11g0065821 Lupinus albus HOM05D007294 ORTHO05D009205 3.1e-35 152.1 115 67.0
Nn5g28204 Nelumbo nucifera HOM05D007294 ORTHO05D009205 5.2e-35 151.4 134 60.4
Potri.002G085200 Populus trichocarpa HOM05D007294 ORTHO05D009205 5.2e-35 151.4 125 65.6
Aqoxy6G00180 Aquilegia oxysepala HOM05D007294 ORTHO05D009205 6.8e-35 151.0 139 59.7
Prupe.1G500700 Prunus persica HOM05D007294 ORTHO05D009205 6.8e-35 151.0 131 61.1
Gorai.009G244600 Gossypium raimondii HOM05D007294 ORTHO05D009205 8.9e-35 150.6 102 73.5
MD08G1165800 Malus domestica HOM05D007294 ORTHO05D009205 1.5e-34 149.8 128 64.1
PGR042G2863 Punica granatum HOM05D007294 ORTHO05D009205 1.5e-34 149.8 121 63.6
Ciclev10002717m.g Citrus clementina HOM05D007294 ORTHO05D009205 2.6e-34 149.1 139 56.8
FAN20G0043 Fragaria x ananassa HOM05D007294 ORTHO05D009205 2.6e-34 149.1 121 62.8
Glyma.06G111500 Glycine max HOM05D007294 ORTHO05D009205 2.6e-34 149.1 125 62.4
AUR62023647 Chenopodium quinoa HOM05D007294 ORTHO05D009205 3.4e-34 148.7 133 59.4
DCAR_014100 Daucus carota HOM05D007294 ORTHO05D009205 3.4e-34 148.7 123 62.6
Duzib093G0485 Durio zibethinus HOM05D007294 ORTHO05D009205 4.4e-34 148.3 106 69.8
Gohir.A05G233900 Gossypium hirsutum HOM05D007294 ORTHO05D009205 5.8e-34 147.9 100 73.0
Eucgr.F03773 Eucalyptus grandis HOM05D007294 ORTHO05D009205 7.5e-34 147.5 139 57.6
Eucgr.F03776 Eucalyptus grandis HOM05D007294 ORTHO05D009205 7.5e-34 147.5 139 57.6
PGSC0003DMG400000918 Solanum tuberosum HOM05D007294 ORTHO05D009205 1.3e-33 146.7 125 60.0
FAN24G1632 Fragaria x ananassa HOM05D007294 ORTHO05D009205 1.7e-33 146.4 121 62.0
Manes.18G075800 Manihot esculenta HOM05D007294 ORTHO05D009205 1.7e-33 146.4 136 58.1
AL6G42020 Arabidopsis lyrata HOM05D007294 ORTHO05D009205 2.2e-33 146.0 110 66.4
FvH4_2g26680 Fragaria vesca HOM05D007294 ORTHO05D009205 2.9e-33 145.6 137 57.7
Sopen11g007690 Solanum pennellii HOM05D007294 ORTHO05D009205 2.9e-33 145.6 125 59.2
AT4G08280 Arabidopsis thaliana HOM05D007294 ORTHO05D009205 6.4e-33 144.4 130 60.0
arahy.Tifrunner.gnm1.ann1.D4BK2C Arachis hypogaea HOM05D007294 ORTHO05D009205 6.4e-33 144.4 137 59.1
arahy.Tifrunner.gnm1.ann1.NH3KYE Arachis hypogaea HOM05D007294 ORTHO05D009205 6.4e-33 144.4 137 59.1
Thecc.08G122800 Theobroma cacao HOM05D007294 ORTHO05D009205 6.4e-33 144.4 102 68.6
ECA246G4672 Erigeron canadensis HOM05D007294 ORTHO05D009205 1.1e-32 143.7 131 56.5
Sed0003401 Sechium edule HOM05D007294 ORTHO05D009205 1.1e-32 143.7 138 60.1
Medtr3g072590 Medicago truncatula HOM05D007294 ORTHO05D009205 1.4e-32 143.3 131 58.8
MSTRG.22416 Avicennia marina HOM05D007294 ORTHO05D009205 1.9e-32 142.9 113 65.5
Carub.0006s2684 Capsella rubella HOM05D007294 ORTHO05D009205 1.9e-32 142.9 136 60.3
CAN.G127.6 Capsicum annuum HOM05D007294 ORTHO05D009205 2.4e-32 142.5 96 71.9
Glyma.04G251200 Glycine max HOM05D007294 ORTHO05D009205 2.4e-32 142.5 107 66.4
Solyc11g012940.2 Solanum lycopersicum HOM05D007294 ORTHO05D009205 2.4e-32 142.5 125 58.4
Ca_15198_v3 Cicer arietinum L. HOM05D007294 ORTHO05D009205 3.2e-32 142.1 138 58.7
Phvul.009G123500 Phaseolus vulgaris HOM05D007294 ORTHO05D009205 3.2e-32 142.1 138 54.3
MBI03_g33023_MAGBIO Magnolia biondii HOM05D007294 ORTHO05D009040 5.4e-32 141.4 103 64.1
Migut.N03292 Erythranthe guttata HOM05D007294 ORTHO05D009205 7.1e-32 141.0 127 61.4
Cc10_g10930 Coffea canephora HOM05D007294 ORTHO05D009205 1.2e-31 140.2 105 64.8
Thhalv10029072m.g Eutrema salsugineum HOM05D007294 ORTHO05D009205 1.2e-31 140.2 104 68.3
PSO528G0176 Papaver somniferum HOM05D007294 ORTHO05D009205 1.2e-31 140.2 128 59.4
Psat0s375g0040 Pisum sativum HOM05D007294 ORTHO05D009205 1.2e-31 140.2 131 58.0
TWI12G0925 Tripterygium wilfordii HOM05D007294 ORTHO05D009205 1.2e-31 140.2 100 69.0
Aa31LG9G14290 Aethionema arabicum HOM05D007294 ORTHO05D009205 1.6e-31 139.8 135 54.8
ClCG11G015660 Citrullus lanatus HOM05D007294 ORTHO05D009205 1.6e-31 139.8 131 58.0
Lj1g0002873 Lotus japonicus HOM05D007294 ORTHO05D009205 2.7e-31 139.0 141 55.3
CANSAT25G2515 Cannabis sativa HOM05D007294 ORTHO05D009205 3.5e-31 138.7 128 56.2
Sp6g09730 Schrenkiella parvula HOM05D007294 ORTHO05D009205 3.5e-31 138.7 119 62.2
BcaC05g27437 Brassica carinata HOM05D007294 ORTHO05D009205 1.3e-30 136.7 103 67.0
BraA05t20931Z Brassica rapa HOM05D007294 ORTHO05D009205 1.3e-30 136.7 103 67.0
Oeu026142.1 Olea europaea HOM05D007294 ORTHO05D009205 1.7e-30 136.3 130 56.9
Zm00001eb256090 Zea mays HOM05D007294 ORTHO05D009205 3.9e-30 135.2 109 61.5
unitig_61.g26063 Utricularia gibba HOM05D007294 ORTHO05D009205 1.1e-29 133.7 110 61.8
C05p33890 Brassica napus HOM05D007294 ORTHO05D009205 1.5e-29 133.3 103 66.0
BolC5t32124H Brassica oleracea HOM05D007294 ORTHO05D009205 1.5e-29 133.3 103 66.0
CSS0038217 Camellia sinensis var. sinensis HOM05D007294 ORTHO05D009205 9.5e-29 130.6 107 64.5
SGA_v2.0_scaffold25G11113 Striga asiatica HOM05D007294 ORTHO05D009205 9.5e-29 130.6 104 61.5
Pp3c23_9240 Physcomitrium patens HOM05D007294 ORTHO05D009205 2.1e-28 129.4 97 62.9
VMungo1309G1993 Vigna mungo HOM05D007294 ORTHO05D009205 2.1e-28 129.4 133 51.1
CBR_g48307 Chara braunii HOM05D007294 ORTHO05D009205 6.2e-28 127.9 94 60.6
vmacro12540 Vaccinium macrocarpon HOM05D007294 ORTHO05D009205 1.4e-27 126.7 92 70.7
SMO145G0156 Selaginella moellendorffii HOM05D007294 ORTHO05D009205 2.3e-27 125.9 105 59.0
Atru.chr13.1423 Acer truncatum HOM05D007294 ORTHO05D009205 4.0e-27 125.2 114 64.9
Rhsim06G0104800 Rhododendron simsii HOM05D007294 ORTHO05D009205 5.2e-27 124.8 73 84.9
Os02g0767900 Oryza sativa ssp. japonica HOM05D007294 ORTHO05D009205 8.9e-27 124.0 93 64.5
AUR62004727 Chenopodium quinoa HOM05D007294 ORTHO05D009205 2.0e-26 122.9 112 61.6
Ah.13g072640 Amaranthus hybridus HOM05D001216 ORTHO05D008355 4.4e-26 121.7 114 55.3
Dinv40407 Davidia involucrata HOM05D007294 ORTHO05D009205 9.9e-26 120.6 106 62.3
Hma1.2p1_0186F.1_g081590 Hydrangea macrophylla HOM05D007294 ORTHO05D009205 1.7e-25 119.8 107 61.7
QL09p035498 Quercus lobata HOM05D007294 ORTHO05D009205 1.7e-25 119.8 114 57.0
Nitab4.5_0001086g0040 Nicotiana tabacum HOM05D007294 ORTHO05D009205 2.2e-25 119.4 112 57.1
FAN15G3738 Fragaria x ananassa HOM05D007294 ORTHO05D009205 2.9e-25 119.0 97 64.9
COL.COLO4_12212 Corchorus olitorius HOM05D007294 ORTHO05D009205 8.4e-25 117.5 104 60.6
Nitab4.5_0002798g0020 Nicotiana tabacum HOM05D007294 ORTHO05D009205 8.4e-25 117.5 102 61.8
Haze_00466 Corylus avellana HOM05D007294 ORTHO05D009205 4.1e-24 115.2 119 56.3
BcaB05g23935 Brassica carinata HOM05D007294 ORTHO05D009205 1.2e-23 113.6 73 78.1
SalBow6G4857 Salvia bowleyana HOM05D007294 ORTHO05D009205 2.7e-23 112.5 83 69.9
AagrBONN_evm.TU.Sc2ySwM_368.1537 Anthoceros agrestis HOM05D007294 ORTHO05D009205 1.3e-22 110.2 105 49.5
Mapoly0007s0151 Marchantia polymorpha HOM05D007294 ORTHO05D009205 3.9e-22 108.6 134 43.3
FAN27G2899 Fragaria x ananassa HOM05D007294 ORTHO05D009205 9.6e-21 104.0 134 47.0
ATR0693G390 Amborella trichopoda HOM05D007294 ORTHO05D009205 1.6e-20 103.2 102 53.9
CDE08G0173 Ceratophyllum demersum HOM05D007294 ORTHO05D009205 1.4e-19 100.1 79 62.0
Cfa015999 Carpinus fangiana HOM05D000760 ORTHO05D009205 5.2e-19 98.2 67 70.1
CDE04G3292 Ceratophyllum demersum HOM05D007294 ORTHO05D009205 1.7e-14 83.2 74 58.1
CARHR259360 Cardamine hirsuta HOM05D007294 ORTHO05D009205 3.9e-14 82.0 52 69.2
MCO13G582 Micromonas commoda HOM05D007294 ORTHO05D009205 1.1e-11 73.9 104 37.5
Cre07.g357300 Chlamydomonas reinhardtii HOM05D007294 ORTHO05D009205 2.4e-11 72.8 108 35.2
Cpa.g.sc36.45 Carica papaya HOM05D007294 ORTHO05D009205 9.0e-11 70.9 82 53.7
Dinv40402 Davidia involucrata HOM05D007294 ORTHO05D009205 1.3e-06 57.0 61 54.1
Nn2g14282 Nelumbo nucifera HOM05D007294 ORTHO05D009205 1.7e-06 56.6 48 60.4


User provided reference genes

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