Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0001050 Simmondsia chinensis HOM05D006274 ORTHO05D007782 4.9e-100 367.9 190 100.0
Hund27007 Selenicereus undatus HOM05D006274 ORTHO05D007782 4.7e-71 271.6 181 78.5
TWI56G1401 Tripterygium wilfordii HOM05D006274 ORTHO05D007782 1.4e-70 270.0 191 70.7
Haze_22342 Corylus avellana HOM05D006274 ORTHO05D007782 5.2e-70 268.1 193 70.5
Cfa013698 Carpinus fangiana HOM05D006274 ORTHO05D007782 1.2e-69 266.9 193 70.5
CiPaw.07G167900 Carya illinoinensis HOM05D006274 ORTHO05D007782 7.6e-69 264.2 193 69.4
EL10Ac1g01111 Beta vulgaris HOM05D006274 ORTHO05D007782 9.9e-69 263.8 181 76.2
SalBow6G3082 Salvia bowleyana HOM05D006274 ORTHO05D007782 2.2e-68 262.7 183 72.1
TAR381G0542 Trochodendron aralioides HOM05D006274 ORTHO05D007782 2.2e-68 262.7 190 68.4
Thecc.08G068200 Theobroma cacao HOM05D006274 ORTHO05D007782 2.9e-68 262.3 192 70.3
Duzib116G0317 Durio zibethinus HOM05D006274 ORTHO05D007782 6.4e-68 261.2 192 68.8
MSTRG.19530 Avicennia marina HOM05D006274 ORTHO05D007782 1.6e-66 256.5 183 69.4
Hund16871 Selenicereus undatus HOM05D006274 ORTHO05D007782 3.5e-66 255.4 185 74.1
QL09p017221 Quercus lobata HOM05D006274 ORTHO05D007782 6.0e-66 254.6 197 69.0
SGA_v2.0_scaffold10G05208 Striga asiatica HOM05D006274 ORTHO05D007782 1.0e-65 253.8 183 71.6
Cc10_g15630 Coffea canephora HOM05D006274 ORTHO05D007782 2.3e-65 252.7 186 69.4
Ciclev10002605m.g Citrus clementina HOM05D006274 ORTHO05D007782 5.1e-65 251.5 190 67.9
Migut.J00587 Erythranthe guttata HOM05D006274 ORTHO05D007782 5.1e-65 251.5 183 71.0
Nn5g29933 Nelumbo nucifera HOM05D006274 ORTHO05D007782 1.1e-64 250.4 194 66.5
Oeu024592.1 Olea europaea HOM05D006274 ORTHO05D007782 1.6e-63 246.5 183 69.9
PGR031G0701 Punica granatum HOM05D006274 ORTHO05D007782 1.6e-63 246.5 197 66.5
Manes.18G061000 Manihot esculenta HOM05D006274 ORTHO05D007782 2.1e-63 246.1 191 68.6
Potri.002G103700 Populus trichocarpa HOM05D006274 ORTHO05D007782 8.1e-63 244.2 193 65.8
GSVIVG01009140001 Vitis vinifera HOM05D006274 ORTHO05D007782 2.4e-62 242.7 161 74.5
Prupe.1G528000 Prunus persica HOM05D006274 ORTHO05D007782 3.1e-62 242.3 192 66.7
Actinidia19642 Actinidia chinensis HOM05D006274 ORTHO05D007782 8.9e-62 240.7 187 64.7
Sed0009042 Sechium edule HOM05D006274 ORTHO05D007782 3.4e-61 238.8 191 64.4
THA.LOC104814210 Tarenaya hassleriana HOM05D006274 ORTHO05D007782 3.4e-61 238.8 194 66.0
PGSC0003DMG400012912 Solanum tuberosum HOM05D006274 ORTHO05D007782 4.4e-61 238.4 181 69.6
Solyc04g076050.4 Solanum lycopersicum HOM05D006274 ORTHO05D007782 5.8e-61 238.0 181 70.7
CSS0045542 Camellia sinensis var. sinensis HOM05D006274 ORTHO05D007782 7.6e-61 237.7 187 65.2
Dinv44839 Davidia involucrata HOM05D006274 ORTHO05D007782 9.9e-61 237.3 188 65.4
Hma1.2p1_0010F.1_g006970 Hydrangea macrophylla HOM05D006274 ORTHO05D007782 9.9e-61 237.3 182 68.1
MBI02_g18284_MAGBIO Magnolia biondii HOM05D006274 ORTHO05D007782 1.7e-60 236.5 190 64.7
CSS0028463 Camellia sinensis var. sinensis HOM05D006274 ORTHO05D007782 2.2e-60 236.1 187 64.7
Sopen00g007030 Solanum pennellii HOM05D006274 ORTHO05D007782 2.2e-60 236.1 182 70.3
Sopen00g007710 Solanum pennellii HOM05D006274 ORTHO05D007782 2.2e-60 236.1 182 70.3
CsaV3_2G030110 Cucumis sativus L. HOM05D006274 ORTHO05D007782 3.8e-60 235.3 191 64.4
MD08G1193500 Malus domestica HOM05D006274 ORTHO05D007782 8.4e-60 234.2 195 63.6
BcaB02g10587 Brassica carinata HOM05D006274 ORTHO05D007782 7.1e-59 231.1 190 64.7
ClCG08G011520 Citrullus lanatus HOM05D006274 ORTHO05D007782 7.1e-59 231.1 215 58.6
Dinv42635 Davidia involucrata HOM05D006274 ORTHO05D007782 9.3e-59 230.7 184 66.3
C04p15430 Brassica napus HOM05D006274 ORTHO05D007782 2.7e-58 229.2 185 64.3
BolC4t23114H Brassica oleracea HOM05D006274 ORTHO05D007782 4.6e-58 228.4 185 64.9
BcaC02g11449 Brassica carinata HOM05D006274 ORTHO05D007782 1.0e-57 227.3 185 64.9
unitig_26.g9169 Utricularia gibba HOM05D006274 ORTHO05D007782 1.0e-57 227.3 178 65.7
THA.LOC104820685 Tarenaya hassleriana HOM05D006274 ORTHO05D007782 1.3e-57 226.9 193 66.3
AL4G29430 Arabidopsis lyrata HOM05D006274 ORTHO05D007782 3.0e-57 225.7 189 64.0
A05p11860 Brassica napus HOM05D006274 ORTHO05D007782 3.0e-57 225.7 185 63.8
Glyma.06G094500 Glycine max HOM05D006274 ORTHO05D007782 3.0e-57 225.7 190 63.2
BraA05t20127Z Brassica rapa HOM05D006274 ORTHO05D007782 3.9e-57 225.3 185 63.8
CDE10G0432 Ceratophyllum demersum HOM05D006274 ORTHO05D007782 5.1e-57 224.9 181 64.6
Thhalv10017289m.g Eutrema salsugineum HOM05D006274 ORTHO05D007782 5.1e-57 224.9 184 64.1
MD15G1382000 Malus domestica HOM05D006274 ORTHO05D007782 5.1e-57 224.9 195 61.5
Glyma.04G092700 Glycine max HOM05D006274 ORTHO05D007782 6.6e-57 224.6 191 62.3
Gohir.D06G032400 Gossypium hirsutum HOM05D006274 ORTHO05D007782 1.5e-56 223.4 192 61.5
AT2G33740 Arabidopsis thaliana HOM05D006274 ORTHO05D007782 2.5e-56 222.6 191 63.9
Lsat_1_v5_gn_9_74940 Lactuca sativa HOM05D006274 ORTHO05D007782 2.5e-56 222.6 180 66.1
Aa31LG9G13640 Aethionema arabicum HOM05D006274 ORTHO05D007782 4.3e-56 221.9 190 64.2
Gorai.010G035700 Gossypium raimondii HOM05D006274 ORTHO05D007782 7.3e-56 221.1 192 60.9
VMungo1309G0647 Vigna mungo HOM05D006274 ORTHO05D007782 2.1e-55 219.5 197 61.4
Carub.0004s1538 Capsella rubella HOM05D006274 ORTHO05D007782 2.8e-55 219.2 189 63.0
ATR0022G028 Amborella trichopoda HOM05D006274 ORTHO05D007782 4.8e-55 218.4 188 60.6
CARHR127760 Cardamine hirsuta HOM05D006274 ORTHO05D007782 1.1e-54 217.2 191 62.3
Nitab4.5_0010618g0040 Nicotiana tabacum HOM05D006274 ORTHO05D007782 1.4e-54 216.9 183 66.1
Phvul.009G143300 Phaseolus vulgaris HOM05D006274 ORTHO05D007782 1.8e-54 216.5 198 59.1
PSO210G3104 Papaver somniferum HOM05D006274 ORTHO05D007782 4.0e-54 215.3 182 64.3
vmacro04670 Vaccinium macrocarpon HOM05D006274 ORTHO05D007782 4.0e-54 215.3 195 60.5
Ca_22436_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 9.0e-54 214.2 191 60.7
Sp4g16090 Schrenkiella parvula HOM05D006274 ORTHO05D007782 1.5e-53 213.4 184 61.4
ECA232G3909 Erigeron canadensis HOM05D006274 ORTHO05D007782 5.8e-53 211.5 186 63.4
MELO3C011069.2 Cucumis melo HOM05D006274 ORTHO05D007782 7.6e-53 211.1 209 57.4
Lj1g0015671 Lotus japonicus HOM05D006274 ORTHO05D007782 9.9e-53 210.7 182 61.5
Eucgr.F02129 Eucalyptus grandis HOM05D006274 ORTHO05D007782 1.3e-52 210.3 191 61.3
Gohir.A05G218200 Gossypium hirsutum HOM05D006274 ORTHO05D007782 1.3e-52 210.3 190 60.0
RcHm_v2.0_Chr7g0237451 Rosa chinensis HOM05D006274 ORTHO05D007782 1.7e-52 209.9 189 59.8
HanXRQChr09g0249401 Helianthus annuus HOM05D006274 ORTHO05D007782 8.4e-52 207.6 181 61.9
Lalb_Chr08g0242401 Lupinus albus HOM05D006274 ORTHO05D007782 8.4e-52 207.6 190 57.9
FvH4_5g35790 Fragaria vesca HOM05D006274 ORTHO05D007782 1.1e-51 207.2 203 56.7
Gorai.009G231100 Gossypium raimondii HOM05D006274 ORTHO05D007782 1.1e-51 207.2 190 58.9
PSO170G6492 Papaver somniferum HOM05D006274 ORTHO05D007782 1.4e-51 206.8 180 63.3
TPR.G26025 Trifolium pratense HOM05D006274 ORTHO05D007782 1.4e-51 206.8 179 60.3
FAN04G0860 Fragaria x ananassa HOM05D006274 ORTHO05D007782 2.4e-51 206.1 201 57.2
FAN18G0017 Fragaria x ananassa HOM05D006274 ORTHO05D007782 5.4e-51 204.9 203 56.7
Nn1g05513 Nelumbo nucifera HOM05D006274 ORTHO05D007782 1.6e-50 203.4 183 59.6
Medtr3g100630 Medicago truncatula HOM05D006274 ORTHO05D007782 2.1e-50 203.0 188 58.5
Sabra02G0081200 Salix brachista HOM05D006274 ORTHO05D007782 1.3e-49 200.3 235 49.4
Aqoxy5G01327 Aquilegia oxysepala HOM05D006274 ORTHO05D007782 3.9e-49 198.7 193 56.5
Peaxi162Scf00281g00415 Petunia axillaris HOM05D006274 ORTHO05D007782 3.9e-49 198.7 178 64.6
Zm00001eb006540 Zea mays HOM05D006274 ORTHO05D007782 5.1e-49 198.4 170 61.8
AUR62019013 Chenopodium quinoa HOM05D006274 ORTHO05D007782 1.9e-48 196.4 113 84.1
AUR62027854 Chenopodium quinoa HOM05D006274 ORTHO05D007782 3.3e-48 195.7 113 84.1
Cpa.g.sc309.7 Carica papaya HOM05D006274 ORTHO05D007782 4.3e-48 195.3 191 57.6
TWI12G0161 Tripterygium wilfordii HOM05D006274 ORTHO05D007782 4.3e-48 195.3 130 71.5
Ca_15989_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 2.1e-47 193.0 164 61.6
Gohir.A06G032628 Gossypium hirsutum HOM05D006274 ORTHO05D007782 1.1e-46 190.7 162 61.1
Actinidia29612 Actinidia chinensis HOM05D006274 ORTHO05D007782 2.4e-46 189.5 160 61.2
Nitab4.5_0001507g0040 Nicotiana tabacum HOM05D006274 ORTHO05D007782 3.1e-46 189.1 181 60.8
Os03g0186950 Oryza sativa ssp. japonica HOM05D006274 ORTHO05D007782 4.0e-46 188.7 118 75.4
Sopen00g004300 Solanum pennellii HOM05D006274 ORTHO05D007782 9.0e-46 187.6 112 80.4
Gohir.D05G223833 Gossypium hirsutum HOM05D006274 ORTHO05D007782 1.2e-45 187.2 190 55.8
MSTRG.6044 Avicennia marina HOM05D006274 ORTHO05D007782 2.0e-45 186.4 113 78.8
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 1.7e-44 183.3 155 65.2
Os10g0378300 Oryza sativa ssp. japonica HOM05D006274 ORTHO05D007782 6.4e-44 181.4 112 76.8
DCAR_012863 Daucus carota HOM05D006274 ORTHO05D007782 1.4e-43 180.3 113 74.3
CAN.G1658.2 Capsicum annuum HOM05D006274 ORTHO05D007782 2.4e-43 179.5 118 76.3
arahy.Tifrunner.gnm1.ann1.44X20L Arachis hypogaea HOM05D006274 ORTHO05D007782 1.9e-40 169.9 165 58.2
arahy.Tifrunner.gnm1.ann1.SMA5HD Arachis hypogaea HOM05D006274 ORTHO05D007782 3.7e-39 165.6 165 57.0
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 6.0e-34 148.3 88 77.3
CANSAT64G0910 Cannabis sativa HOM05D006274 ORTHO05D007782 5.1e-33 145.2 133 58.6
Sed0010188 Sechium edule HOM05D006274 ORTHO05D007782 1.9e-32 143.3 92 71.7
FAN13G2708 Fragaria x ananassa HOM05D006274 ORTHO05D007782 3.3e-32 142.5 92 67.4
Atru.chr13.1045 Acer truncatum HOM05D006274 ORTHO05D007782 7.4e-32 141.4 100 68.0
FAN08G3216 Fragaria x ananassa HOM05D006274 ORTHO05D007782 2.8e-31 139.4 92 66.3
SMO119G0339 Selaginella moellendorffii HOM05D006274 ORTHO05D007782 1.8e-30 136.7 110 56.4
Mapoly0011s0077 Marchantia polymorpha HOM05D006274 ORTHO05D007782 2.0e-29 133.3 120 52.5
SEGI_33866 Sequoiadendron giganteum HOM05D006274 ORTHO05D007782 3.8e-28 129.0 139 46.0
SEGI_16140 Sequoiadendron giganteum HOM05D006274 ORTHO05D007782 7.2e-27 124.8 90 63.3
Psat5g045880 Pisum sativum HOM05D006274 ORTHO05D007782 9.3e-27 124.4 130 53.1
EL10Ac9g22466 Beta vulgaris HOM05D006274 ORTHO05D007782 2.1e-26 123.2 70 81.4
Rhsim07G0210300 Rhododendron simsii HOM05D006274 ORTHO05D007782 1.8e-25 120.2 70 78.6
CBR_g39263 Chara braunii HOM05D002374 ORTHO05D003594 8.7e-25 117.9 101 51.5
Cre02.g082350 Chlamydomonas reinhardtii HOM05D006274 ORTHO05D007782 1.5e-24 117.1 97 55.7
PRCOL_00002052 Prasinoderma coloniale HOM05D006274 ORTHO05D007782 2.5e-24 116.3 94 54.3
AagrBONN_evm.TU.Sc2ySwM_228.3755 Anthoceros agrestis HOM05D006274 ORTHO05D007782 1.1e-19 100.9 81 58.0
Pp3c21_2600 Physcomitrium patens HOM05D006274 ORTHO05D007782 1.4e-19 100.5 125 43.2
CBR_g7959 Chara braunii HOM05D006274 ORTHO05D007782 3.3e-16 89.4 92 45.7
Ca_28793_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 2.2e-07 60.1 85 32.9


User provided reference genes

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