Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0000460 Simmondsia chinensis HOM05D004394 ORTHO05D005208 1.8e-63 245.7 123 100.0
Prupe.1G517100 Prunus persica HOM05D004394 ORTHO05D005208 3.2e-52 208.4 123 79.7
FvH4_5g37330 Fragaria vesca HOM05D004394 ORTHO05D005208 4.2e-52 208.0 123 78.9
FAN18G2812 Fragaria x ananassa HOM05D004394 ORTHO05D005208 4.2e-52 208.0 123 78.9
FAN08G2022 Fragaria x ananassa HOM05D004394 ORTHO05D005208 7.1e-52 207.2 123 78.9
Aqoxy6G00782 Aquilegia oxysepala HOM05D004394 ORTHO05D005208 9.3e-52 206.8 123 80.5
Haze_22268 Corylus avellana HOM05D004394 ORTHO05D005208 9.3e-52 206.8 123 78.9
QL12p036785 Quercus lobata HOM05D004394 ORTHO05D005208 1.2e-51 206.5 122 80.3
Lalb_Chr08g0242051 Lupinus albus HOM05D004394 ORTHO05D005208 2.7e-51 205.3 123 79.7
FAN13G1242 Fragaria x ananassa HOM05D004394 ORTHO05D005208 3.5e-51 204.9 123 78.0
Manes.08G094000 Manihot esculenta HOM05D004394 ORTHO05D005208 3.5e-51 204.9 123 78.9
MD08G1182900 Malus domestica HOM05D004394 ORTHO05D005208 6.0e-51 204.1 123 78.9
Phvul.007G087400 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 7.8e-51 203.8 123 77.2
GSVIVG01032524001 Vitis vinifera HOM05D004394 ORTHO05D005208 7.8e-51 203.8 123 78.0
SalBow7G3516 Salvia bowleyana HOM05D004394 ORTHO05D005208 1.0e-50 203.4 123 77.2
AUR62036356 Chenopodium quinoa HOM05D004394 ORTHO05D005208 1.3e-50 203.0 123 78.0
SalBow7G2639 Salvia bowleyana HOM05D004394 ORTHO05D005208 1.7e-50 202.6 123 77.2
Eucgr.D01128 Eucalyptus grandis HOM05D004394 ORTHO05D005208 2.3e-50 202.2 123 76.4
SGA_v2.0_scaffold24G10492 Striga asiatica HOM05D004394 ORTHO05D005208 3.0e-50 201.8 123 74.0
Cfa013636 Carpinus fangiana HOM05D004394 ORTHO05D005208 3.9e-50 201.4 123 77.2
Nn2g12152 Nelumbo nucifera HOM05D004394 ORTHO05D005208 3.9e-50 201.4 123 76.4
TAR376G0181 Trochodendron aralioides HOM05D004394 ORTHO05D005208 3.9e-50 201.4 123 76.4
EL10Ac5g11858 Beta vulgaris HOM05D004394 ORTHO05D005208 5.1e-50 201.1 123 77.2
CANSAT80G0901 Cannabis sativa HOM05D004394 ORTHO05D005208 5.1e-50 201.1 123 76.4
ClCG08G011100 Citrullus lanatus HOM05D004394 ORTHO05D005208 5.1e-50 201.1 123 76.4
Cc10_g07190 Coffea canephora HOM05D004394 ORTHO05D005208 5.1e-50 201.1 123 77.2
Atru.chr13.1186 Acer truncatum HOM05D004394 ORTHO05D005208 6.6e-50 200.7 124 75.8
Psat2g179880 Pisum sativum HOM05D004394 ORTHO05D005208 6.6e-50 200.7 123 76.4
CDE06G0322 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 8.7e-50 200.3 123 77.2
AUR62030717 Chenopodium quinoa HOM05D004394 ORTHO05D005208 8.7e-50 200.3 123 77.2
MBI05_g37052_MAGBIO Magnolia biondii HOM05D004394 ORTHO05D005208 8.7e-50 200.3 123 75.6
Ah.12g059310 Amaranthus hybridus HOM05D004394 ORTHO05D005208 1.5e-49 199.5 123 77.2
MSTRG.25920 Avicennia marina HOM05D004394 ORTHO05D005208 1.5e-49 199.5 123 74.8
CDE02G1736 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 1.5e-49 199.5 123 77.2
Migut.C01173 Erythranthe guttata HOM05D004394 ORTHO05D005208 1.9e-49 199.1 123 75.6
Glyma.20G173300 Glycine max HOM05D004394 ORTHO05D005208 1.9e-49 199.1 123 74.8
Medtr2g028730 Medicago truncatula HOM05D004394 ORTHO05D005208 1.9e-49 199.1 123 76.4
Psat1g170200 Pisum sativum HOM05D004394 ORTHO05D005208 1.9e-49 199.1 123 75.6
TPR.G17517 Trifolium pratense HOM05D004394 ORTHO05D005208 1.9e-49 199.1 123 76.4
TAR628G0041 Trochodendron aralioides HOM05D004394 ORTHO05D005208 1.9e-49 199.1 123 74.8
Oeu046302.1 Olea europaea HOM05D004394 ORTHO05D005208 2.5e-49 198.7 123 75.6
Sabra02G0076100 Salix brachista HOM05D004394 ORTHO05D005208 2.5e-49 198.7 123 74.8
VMungo0720G0524 Vigna mungo HOM05D004394 ORTHO05D005208 2.5e-49 198.7 121 74.4
Ciclev10003351m.g Citrus clementina HOM05D004394 ORTHO05D005208 3.3e-49 198.4 124 76.6
MELO3C011026.2 Cucumis melo HOM05D004394 ORTHO05D005208 3.3e-49 198.4 123 75.6
Lj2g0026973 Lotus japonicus HOM05D004394 ORTHO05D005208 4.3e-49 198.0 123 76.4
PSO781G0205 Papaver somniferum HOM05D004394 ORTHO05D005208 4.3e-49 198.0 123 74.8
Potri.005G165000 Populus trichocarpa HOM05D004394 ORTHO05D005208 4.3e-49 198.0 123 75.6
TPR.G10620 Trifolium pratense HOM05D004394 ORTHO05D005208 4.3e-49 198.0 123 74.8
Atru.chr5.2725 Acer truncatum HOM05D004394 ORTHO05D005208 5.6e-49 197.6 124 75.8
CiPaw.08G045200 Carya illinoinensis HOM05D004394 ORTHO05D005208 5.6e-49 197.6 121 76.9
Dinv36547 Davidia involucrata HOM05D004394 ORTHO05D005208 5.6e-49 197.6 121 76.0
Glyma.10G218300 Glycine max HOM05D004394 ORTHO05D005208 5.6e-49 197.6 123 73.2
Potri.002G096600 Populus trichocarpa HOM05D004394 ORTHO05D005208 5.6e-49 197.6 123 74.0
Ca_08121_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 7.3e-49 197.2 123 75.6
Lsat_1_v5_gn_2_108521 Lactuca sativa HOM05D004394 ORTHO05D005208 7.3e-49 197.2 124 75.8
CsaV3_2G029680 Cucumis sativus L. HOM05D004394 ORTHO05D005208 9.6e-49 196.8 123 74.8
Peaxi162Scf00041g00179 Petunia axillaris HOM05D004394 ORTHO05D005208 1.3e-48 196.4 123 73.2
PGR042G0728 Punica granatum HOM05D004394 ORTHO05D005208 1.3e-48 196.4 123 74.8
Lalb_Chr11g0065431 Lupinus albus HOM05D004394 ORTHO05D005208 1.6e-48 196.1 123 74.8
Nn5g30107 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.6e-48 196.1 122 73.0
PSO541G5821 Papaver somniferum HOM05D004394 ORTHO05D005208 1.6e-48 196.1 123 74.0
Ca_20267_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 2.1e-48 195.7 123 74.0
Oeu012929.1 Olea europaea HOM05D004394 ORTHO05D005208 2.1e-48 195.7 123 74.0
ATR0782G020 Amborella trichopoda HOM05D004394 ORTHO05D005208 2.8e-48 195.3 123 76.4
CANSAT80G2869 Cannabis sativa HOM05D004394 ORTHO05D005208 2.8e-48 195.3 123 72.4
QL03p027611 Quercus lobata HOM05D004394 ORTHO05D005208 2.8e-48 195.3 123 75.6
AUR62027759 Chenopodium quinoa HOM05D004394 ORTHO05D005208 4.8e-48 194.5 123 74.8
RcHm_v2.0_Chr7g0238971 Rosa chinensis HOM05D004394 ORTHO05D005208 4.8e-48 194.5 123 75.6
unitig_899.g14554 Utricularia gibba HOM05D000298 ORTHO05D000553 4.8e-48 194.5 123 72.4
Actinidia30773 Actinidia chinensis HOM05D004394 ORTHO05D005208 6.2e-48 194.1 122 72.1
HanXRQChr07g0194691 Helianthus annuus HOM05D004394 ORTHO05D005208 6.2e-48 194.1 124 74.2
Nitab4.5_0000232g0200 Nicotiana tabacum HOM05D004394 ORTHO05D005208 8.1e-48 193.7 123 72.4
Actinidia10324 Actinidia chinensis HOM05D004394 ORTHO05D005208 1.4e-47 193.0 123 72.4
ECA238G4620 Erigeron canadensis HOM05D004394 ORTHO05D005208 1.4e-47 193.0 124 73.4
Thecc.08G106700 Theobroma cacao HOM05D004394 ORTHO05D005208 1.8e-47 192.6 125 75.2
Phvul.002G138800 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 2.4e-47 192.2 122 72.1
PGSC0003DMG400006413 Solanum tuberosum HOM05D004394 ORTHO05D005208 2.4e-47 192.2 123 72.4
HanXRQChr04g0126451 Helianthus annuus HOM05D004394 ORTHO05D005208 3.1e-47 191.8 124 73.4
Sabra05G0124400 Salix brachista HOM05D004394 ORTHO05D005208 3.1e-47 191.8 121 73.6
CAN.G101.27 Capsicum annuum HOM05D004394 ORTHO05D005208 4.0e-47 191.4 123 72.4
Sed0012623 Sechium edule HOM05D004394 ORTHO05D005208 4.0e-47 191.4 123 71.5
Sopen04g029330 Solanum pennellii HOM05D004394 ORTHO05D005208 4.0e-47 191.4 123 71.5
Cpa.g.sc53.145 Carica papaya HOM05D004394 ORTHO05D005208 5.3e-47 191.0 124 74.2
Duzib041G0085 Durio zibethinus HOM05D004394 ORTHO05D005208 5.3e-47 191.0 125 75.2
Duzib093G1861 Durio zibethinus HOM05D004394 ORTHO05D005208 6.9e-47 190.7 125 73.6
Duzib093G0332 Durio zibethinus HOM05D004394 ORTHO05D005208 9.0e-47 190.3 125 73.6
CSS0017732 Camellia sinensis var. sinensis HOM05D004394 ORTHO05D005208 1.5e-46 189.5 123 69.1
Gohir.D06G036200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 4.5e-46 188.0 125 73.6
Gorai.010G040200 Gossypium raimondii HOM05D004394 ORTHO05D005208 4.5e-46 188.0 125 73.6
MD15G1369300 Malus domestica HOM05D004394 ORTHO05D005208 7.6e-46 187.2 116 76.7
TWI12G1259 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 7.6e-46 187.2 124 73.4
BraA07t29204Z Brassica rapa HOM05D004394 ORTHO05D005208 9.9e-46 186.8 126 71.4
DCAR_008736 Daucus carota HOM05D004394 ORTHO05D005208 1.3e-45 186.4 124 71.0
Medtr1g050345 Medicago truncatula HOM05D004394 ORTHO05D005208 1.3e-45 186.4 123 70.7
Cpa.g.sc36.132 Carica papaya HOM05D004394 ORTHO05D005208 1.7e-45 186.0 124 72.6
BcaC06g34947 Brassica carinata HOM05D004394 ORTHO05D005208 2.2e-45 185.7 126 70.6
BolC7t42673H Brassica oleracea HOM05D004394 ORTHO05D005208 2.2e-45 185.7 126 70.6
Gohir.A06G035600 Gossypium hirsutum HOM05D004394 ORTHO05D005208 2.2e-45 185.7 125 72.8
BcaB07g32248 Brassica carinata HOM05D004394 ORTHO05D005208 2.9e-45 185.3 129 69.0
TWI36G1364 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 2.9e-45 185.3 124 69.4
A09p42510 Brassica napus HOM05D004394 ORTHO05D005208 6.4e-45 184.1 128 69.5
BraA09t39727Z Brassica rapa HOM05D004394 ORTHO05D005208 6.4e-45 184.1 128 69.5
Carub.0001s2182 Capsella rubella HOM05D004394 ORTHO05D005208 6.4e-45 184.1 125 71.2
A07p14580 Brassica napus HOM05D004394 ORTHO05D005208 8.4e-45 183.7 125 70.4
C07p21470 Brassica napus HOM05D004394 ORTHO05D005208 8.4e-45 183.7 124 70.2
BcaC05g26154 Brassica carinata HOM05D004394 ORTHO05D005208 1.1e-44 183.3 127 70.1
C05p21390 Brassica napus HOM05D004394 ORTHO05D005208 1.1e-44 183.3 127 70.1
THA.LOC104800150 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 1.1e-44 183.3 125 70.4
THA.LOC104809715 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 1.1e-44 183.3 125 70.4
Sp1g19780 Schrenkiella parvula HOM05D004394 ORTHO05D005208 1.9e-44 182.6 126 69.0
CARHR022650 Cardamine hirsuta HOM05D004394 ORTHO05D005208 3.2e-44 181.8 125 70.4
AL1G35720 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 4.2e-44 181.4 125 69.6
Gohir.A05G267200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 5.4e-44 181.0 125 72.8
AT1G22270 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 7.1e-44 180.6 125 69.6
Mapoly0008s0078 Marchantia polymorpha HOM05D004394 ORTHO05D005208 9.3e-44 180.3 123 69.1
BolC5t30836H Brassica oleracea HOM05D004394 ORTHO05D005208 1.6e-43 179.5 127 68.5
Hma1.2p1_0575F.1_g181580 Hydrangea macrophylla HOM05D004394 ORTHO05D005208 2.1e-43 179.1 116 71.6
Gorai.009G281400 Gossypium raimondii HOM05D004394 ORTHO05D005208 2.7e-43 178.7 125 72.0
Gohir.D05G268800 Gossypium hirsutum HOM05D004394 ORTHO05D005208 6.0e-43 177.6 125 71.2
SMO356G0508 Selaginella moellendorffii HOM05D004394 ORTHO05D005208 6.0e-43 177.6 123 69.1
Solyc04g074150.3 Solanum lycopersicum HOM05D004394 ORTHO05D005208 7.9e-43 177.2 116 69.8
CARHR071660 Cardamine hirsuta HOM05D004394 ORTHO05D005208 1.0e-42 176.8 125 67.2
SEGI_05614 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 1.0e-42 176.8 123 69.1
Aa31LG7G6210 Aethionema arabicum HOM05D004394 ORTHO05D005208 1.8e-42 176.0 125 68.8
EL10Ac1g01214 Beta vulgaris HOM05D004394 ORTHO05D005208 3.9e-42 174.9 116 73.3
COL.COLO4_16398 Corchorus olitorius HOM05D004394 ORTHO05D005208 3.9e-42 174.9 118 72.0
Thhalv10009116m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 3.9e-42 174.9 126 65.9
Pp3c10_8220 Physcomitrium patens HOM05D004394 ORTHO05D005208 8.7e-42 173.7 123 66.7
SHI20485 Sapria himalayana HOM05D004394 ORTHO05D005208 1.5e-41 172.9 121 63.6
CBR_g44926 Chara braunii HOM05D004394 ORTHO05D005208 1.9e-41 172.6 123 66.7
Thhalv10019322m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 1.9e-41 172.6 125 66.4
BcaC08g47394 Brassica carinata HOM05D004394 ORTHO05D005208 9.6e-41 170.2 124 67.7
Haze_00323 Corylus avellana HOM05D004394 ORTHO05D005208 1.3e-40 169.9 123 68.3
Carub.0002s2509 Capsella rubella HOM05D004394 ORTHO05D005208 2.8e-40 168.7 123 63.4
Rhsim06G0082000 Rhododendron simsii HOM05D004394 ORTHO05D005208 3.7e-40 168.3 121 65.3
AT1G78190 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 6.2e-40 167.5 125 65.6
CANSAT80G2909 Cannabis sativa HOM05D004394 ORTHO05D005208 6.2e-40 167.5 118 65.3
Sp5g33330 Schrenkiella parvula HOM05D004394 ORTHO05D005208 6.2e-40 167.5 125 64.8
CANSAT35G1737 Cannabis sativa HOM05D004394 ORTHO05D005208 1.4e-39 166.4 115 67.0
AL2G38520 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 2.4e-39 165.6 125 65.6
BcaB03g15991 Brassica carinata HOM05D004394 ORTHO05D005208 2.4e-39 165.6 125 64.8
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 5.3e-39 164.5 122 65.6
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 9.0e-39 163.7 122 65.6
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 9.0e-39 163.7 122 65.6
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 3.4e-38 161.8 122 63.9
Cpa.g.sc247.5 Carica papaya HOM05D004394 ORTHO05D005208 3.4e-38 161.8 122 65.6
Nn6g33602 Nelumbo nucifera HOM05D004394 ORTHO05D005208 2.2e-37 159.1 116 63.8
BcaB03g14221 Brassica carinata HOM05D004394 ORTHO05D005208 2.9e-37 158.7 113 68.1
Nn4g22250 Nelumbo nucifera HOM05D004394 ORTHO05D005208 4.9e-37 157.9 109 65.1
Nitab4.5_0005777g0070 Nicotiana tabacum HOM05D004394 ORTHO05D005208 4.9e-37 157.9 114 65.8
Cre12.g512550 Chlamydomonas reinhardtii HOM05D004394 ORTHO05D005208 1.4e-36 156.4 122 62.3
AagrBONN_evm.TU.Sc2ySwM_344.4664 Anthoceros agrestis HOM05D004394 ORTHO05D005208 3.9e-34 148.3 123 59.3
AUR62038524 Chenopodium quinoa HOM05D004394 ORTHO05D005208 1.5e-33 146.4 88 75.0
Zm00001eb109660 Zea mays HOM05D004394 ORTHO05D005208 6.2e-32 141.0 132 49.2
Os07g0623000 Oryza sativa ssp. japonica HOM05D004394 ORTHO05D005208 6.9e-31 137.5 131 52.7
CiPaw.07G180000 Carya illinoinensis HOM05D004394 ORTHO05D005208 4.9e-29 131.3 106 60.4
MCO01G362 Micromonas commoda HOM05D004394 ORTHO05D005208 2.5e-28 129.0 122 51.6
Cpa.g.sc257.3 Carica papaya HOM05D004394 ORTHO05D005208 4.6e-27 124.8 123 53.7
PRCOL_00005343 Prasinoderma coloniale HOM05D004394 ORTHO05D005208 1.1e-25 120.2 132 47.7
Nn8g39569 Nelumbo nucifera HOM05D004394 ORTHO05D005208 3.1e-23 112.1 106 51.9
Cfa016137 Carpinus fangiana HOM05D004394 ORTHO05D005208 1.2e-22 110.2 115 49.6
Haze_27710 Corylus avellana HOM05D004394 ORTHO05D005208 5.0e-21 104.8 122 45.9
Lsat_1_v5_gn_4_16040 Lactuca sativa HOM05D004394 ORTHO05D005208 4.2e-20 101.7 123 45.5
QL05p087667 Quercus lobata HOM05D004394 ORTHO05D000126 9.3e-20 100.5 68 67.6
SEGI_26774 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 2.7e-19 99.0 59 69.5
Nn1g03585 Nelumbo nucifera HOM05D004394 ORTHO05D005208 3.1e-15 85.5 57 63.2
HanXRQChr03g0069311 Helianthus annuus HOM05D004394 ORTHO05D005208 2.0e-09 66.2 39 64.1


User provided reference genes

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