Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0000420 Simmondsia chinensis HOM05D005894 ORTHO05D007461 2.3e-176 622.1 309 100.0
Sc01g0002320 Simmondsia chinensis HOM05D005894 ORTHO05D007461 2.7e-108 396.0 315 59.0
Sc01g0002310 Simmondsia chinensis HOM05D005894 ORTHO05D007461 2.1e-105 386.3 316 58.2
Actinidia20275 Actinidia chinensis HOM05D005894 ORTHO05D007461 2.2e-94 349.7 306 55.9
Hma1.2p1_0309F.1_g120580 Hydrangea macrophylla HOM05D005894 ORTHO05D007461 2.9e-94 349.4 299 53.2
TAR375G0623 Trochodendron aralioides HOM05D005894 ORTHO05D007461 1.1e-93 347.4 314 51.0
ECA234G4535 Erigeron canadensis HOM05D005894 ORTHO05D007461 2.5e-93 346.3 294 56.1
Rhsim07G0001000 Rhododendron simsii HOM05D005894 ORTHO05D007461 6.7e-91 338.2 298 53.7
HanXRQChr17g0563091 Helianthus annuus HOM05D005894 ORTHO05D007461 1.1e-90 337.4 293 53.9
vmacro04295 Vaccinium macrocarpon HOM05D005894 ORTHO05D007461 1.5e-90 337.0 302 51.7
AUR62004546 Chenopodium quinoa HOM05D005894 ORTHO05D007461 3.7e-89 332.4 306 51.3
Nn3g18834 Nelumbo nucifera HOM05D005894 ORTHO05D007461 6.3e-89 331.6 312 50.6
HanXRQChr16g0524851 Helianthus annuus HOM05D005894 ORTHO05D007461 1.4e-88 330.5 282 55.3
Lsat_1_v5_gn_4_31980 Lactuca sativa HOM05D005894 ORTHO05D007461 6.9e-88 328.2 292 54.5
Aa31LG1G10550 Aethionema arabicum HOM05D005894 ORTHO05D007461 1.2e-87 327.4 308 51.0
CARHR001290 Cardamine hirsuta HOM05D005894 ORTHO05D007461 1.2e-87 327.4 295 52.5
MD07G1156900 Malus domestica HOM05D005894 ORTHO05D007461 2.6e-87 326.2 307 51.1
Oeu042964.1 Olea europaea HOM05D005894 ORTHO05D007461 7.7e-87 324.7 290 52.4
AT1G01180 Arabidopsis thaliana HOM05D005894 ORTHO05D007461 1.0e-86 324.3 308 51.6
Thhalv10008287m.g Eutrema salsugineum HOM05D005894 ORTHO05D007461 1.0e-86 324.3 295 51.5
ClCG06G002760 Citrullus lanatus HOM05D005894 ORTHO05D007461 3.8e-86 322.4 311 50.5
Carub.0001s0103 Capsella rubella HOM05D005894 ORTHO05D007461 5.0e-86 322.0 295 49.5
QL08p046715 Quercus lobata HOM05D005894 ORTHO05D007461 5.0e-86 322.0 309 48.5
arahy.Tifrunner.gnm1.ann1.IJN1JI Arachis hypogaea HOM05D005894 ORTHO05D007461 6.5e-86 321.6 310 49.0
MBI04_g25320_MAGBIO Magnolia biondii HOM05D005894 ORTHO05D007461 8.5e-86 321.2 297 49.8
Sed0008841 Sechium edule HOM05D005894 ORTHO05D007461 8.5e-86 321.2 302 53.0
AL1G11320 Arabidopsis lyrata HOM05D005894 ORTHO05D007461 1.4e-85 320.5 316 49.1
arahy.Tifrunner.gnm1.ann1.UMNZ42 Arachis hypogaea HOM05D005894 ORTHO05D007461 1.4e-85 320.5 305 49.2
arahy.Tifrunner.gnm1.ann1.YB3WUJ Arachis hypogaea HOM05D005894 ORTHO05D007461 1.4e-85 320.5 305 49.2
Lsat_1_v5_gn_4_31960 Lactuca sativa HOM05D005894 ORTHO05D007461 1.4e-85 320.5 293 51.2
Potri.002G177500 Populus trichocarpa HOM05D005894 ORTHO05D007461 1.4e-85 320.5 292 50.0
Haze_15704 Corylus avellana HOM05D005894 ORTHO05D007461 1.9e-85 320.1 307 48.9
TWI14G1398 Tripterygium wilfordii HOM05D005894 ORTHO05D007461 1.9e-85 320.1 306 48.4
Cfa003752 Carpinus fangiana HOM05D005894 ORTHO05D007461 2.5e-85 319.7 307 48.9
Haze_15713 Corylus avellana HOM05D005894 ORTHO05D007461 4.2e-85 318.9 307 48.9
Duzib133G0870 Durio zibethinus HOM05D005894 ORTHO05D007461 4.2e-85 318.9 294 49.3
THA.LOC104801356 Tarenaya hassleriana HOM05D005894 ORTHO05D007461 4.2e-85 318.9 290 53.8
Manes.01G241500 Manihot esculenta HOM05D005894 ORTHO05D007461 5.5e-85 318.5 291 49.8
Ciclev10023878m.g Citrus clementina HOM05D005894 ORTHO05D007461 9.4e-85 317.8 297 53.5
Glyma.07G051400 Glycine max HOM05D005894 ORTHO05D007461 9.4e-85 317.8 314 47.8
Gohir.A07G134700 Gossypium hirsutum HOM05D005894 ORTHO05D007461 9.4e-85 317.8 309 47.2
MSTRG.20917 Avicennia marina HOM05D005894 ORTHO05D007461 2.1e-84 316.6 305 49.8
MSTRG.20916 Avicennia marina HOM05D005894 ORTHO05D007461 2.7e-84 316.2 294 50.7
Thecc.01G335500 Theobroma cacao HOM05D005894 ORTHO05D007461 2.7e-84 316.2 306 46.7
Peaxi162Scf00767g00044 Petunia axillaris HOM05D005894 ORTHO05D007461 3.6e-84 315.8 307 48.9
arahy.Tifrunner.gnm1.ann1.FN9JYV Arachis hypogaea HOM05D005894 ORTHO05D007461 4.6e-84 315.5 305 48.5
Nitab4.5_0000307g0270 Nicotiana tabacum HOM05D005894 ORTHO05D007461 4.6e-84 315.5 307 50.2
Sabra02G0136100 Salix brachista HOM05D005894 ORTHO05D007461 4.6e-84 315.5 292 49.0
Sed0016091 Sechium edule HOM05D005894 ORTHO05D007461 6.1e-84 315.1 308 50.3
Gorai.001G151400 Gossypium raimondii HOM05D005894 ORTHO05D007461 7.9e-84 314.7 309 46.6
Sp1g01110 Schrenkiella parvula HOM05D005894 ORTHO05D007461 1.0e-83 314.3 295 49.8
BraA10t42349Z Brassica rapa HOM05D005894 ORTHO05D007461 1.4e-83 313.9 295 50.5
PSO063G1123 Papaver somniferum HOM05D005894 ORTHO05D007461 1.4e-83 313.9 319 47.6
Ah.05g179110 Amaranthus hybridus HOM05D005894 ORTHO05D007461 1.8e-83 313.5 293 49.8
Cpa.g.sc141.18 Carica papaya HOM05D005894 ORTHO05D007461 1.8e-83 313.5 326 47.2
A10p00720 Brassica napus HOM05D005894 ORTHO05D007461 2.3e-83 313.2 295 50.5
Prupe.2G195400 Prunus persica HOM05D005894 ORTHO05D007461 2.3e-83 313.2 309 50.5
Cc02_g39840 Coffea canephora HOM05D005894 ORTHO05D007461 5.1e-83 312.0 311 49.2
COL.COLO4_06220 Corchorus olitorius HOM05D005894 ORTHO05D007461 6.7e-83 311.6 293 48.5
Ah.07g207870 Amaranthus hybridus HOM05D005894 ORTHO05D007461 8.8e-83 311.2 300 50.0
Lalb_Chr17g0342931 Lupinus albus HOM05D005894 ORTHO05D007461 8.8e-83 311.2 296 49.7
Dinv32633 Davidia involucrata HOM05D005894 ORTHO05D007461 1.1e-82 310.8 295 52.2
Lj3g0011008 Lotus japonicus HOM05D005894 ORTHO05D007461 1.1e-82 310.8 298 49.7
C05p00760 Brassica napus HOM05D005894 ORTHO05D007461 2.5e-82 309.7 295 49.8
PGSC0003DMG400018381 Solanum tuberosum HOM05D005894 ORTHO05D007461 4.3e-82 308.9 311 48.6
CiPaw.01G080700 Carya illinoinensis HOM05D005894 ORTHO05D007461 7.4e-82 308.1 296 48.3
Duzib138G0081 Durio zibethinus HOM05D005894 ORTHO05D007461 9.7e-82 307.8 307 46.3
BolC5t28860H Brassica oleracea HOM05D005894 ORTHO05D007461 1.3e-81 307.4 295 50.2
TPR.G14294 Trifolium pratense HOM05D005894 ORTHO05D007461 1.3e-81 307.4 318 47.8
BcaB03g13563 Brassica carinata HOM05D005894 ORTHO05D007461 2.2e-81 306.6 295 49.2
Ca_23494_v3 Cicer arietinum L. HOM05D005894 ORTHO05D007461 1.1e-80 304.3 313 49.2
Ca_29944_v3 Cicer arietinum L. HOM05D005894 ORTHO05D007461 1.1e-80 304.3 313 49.2
Medtr8g024680 Medicago truncatula HOM05D005894 ORTHO05D007461 1.1e-80 304.3 312 45.8
Phvul.010G118000 Phaseolus vulgaris HOM05D005894 ORTHO05D007461 1.1e-80 304.3 306 45.8
VMungo0331G1846 Vigna mungo HOM05D005894 ORTHO05D007461 1.4e-80 303.9 306 45.4
AUR62022660 Chenopodium quinoa HOM05D005894 ORTHO05D007461 1.8e-80 303.5 225 57.8
MELO3C022251.2 Cucumis melo HOM05D005894 ORTHO05D007461 1.8e-80 303.5 226 58.8
Atru.chr5.746 Acer truncatum HOM05D005894 ORTHO05D007461 2.4e-80 303.1 293 49.1
Gohir.D12G119200 Gossypium hirsutum HOM05D005894 ORTHO05D007461 2.4e-80 303.1 294 50.3
Sopen00g010520 Solanum pennellii HOM05D005894 ORTHO05D007461 2.4e-80 303.1 296 49.7
ATR0090G035 Amborella trichopoda HOM05D005894 ORTHO05D007461 4.1e-80 302.4 290 50.7
Gohir.A12G115600 Gossypium hirsutum HOM05D005894 ORTHO05D007461 9.1e-80 301.2 294 48.6
Solyc01g096380.1 Solanum lycopersicum HOM05D005894 ORTHO05D007461 3.4e-79 299.3 303 48.5
CsaV3_6G008930 Cucumis sativus L. HOM05D005894 ORTHO05D007461 4.5e-79 298.9 226 58.0
MSTRG.26254 Avicennia marina HOM05D005894 ORTHO05D007461 1.0e-78 297.7 294 48.6
CAN.G1045.39 Capsicum annuum HOM05D005894 ORTHO05D007461 1.0e-78 297.7 302 48.3
FAN10G2153 Fragaria x ananassa HOM05D005894 ORTHO05D007461 1.0e-78 297.7 292 47.9
SGA_v2.0_scaffold5G03060 Striga asiatica HOM05D005894 ORTHO05D007461 1.3e-78 297.4 235 57.0
FAN03G0327 Fragaria x ananassa HOM05D005894 ORTHO05D007461 2.2e-78 296.6 292 49.0
Lj2g0016031 Lotus japonicus HOM05D005894 ORTHO05D007461 8.5e-78 294.7 302 48.3
Psat4g216640 Pisum sativum HOM05D005894 ORTHO05D007461 2.5e-77 293.1 310 45.5
FAN10G4192 Fragaria x ananassa HOM05D005894 ORTHO05D007461 5.5e-77 292.0 292 48.3
SEGI_06461 Sequoiadendron giganteum HOM05D005894 ORTHO05D007461 9.4e-77 291.2 228 56.1
FAN06G1719 Fragaria x ananassa HOM05D005894 ORTHO05D007461 1.2e-76 290.8 292 48.6
PSO782G1789 Papaver somniferum HOM05D005894 ORTHO05D007461 2.1e-76 290.0 314 47.1
Potri.014G103800 Populus trichocarpa HOM05D005894 ORTHO05D007461 3.6e-76 289.3 225 54.7
Migut.B01913 Erythranthe guttata HOM05D005894 ORTHO05D007461 5.1e-75 285.4 291 48.5
Pp3c20_5150 Physcomitrium patens HOM05D005894 ORTHO05D007461 6.7e-75 285.0 235 52.3
Lj9P603T40 Lonicera japonica HOM05D005894 ORTHO05D007461 8.8e-75 284.6 206 58.7
Pp3c23_20890 Physcomitrium patens HOM05D005894 ORTHO05D007461 6.3e-73 278.5 235 50.2
QL08p046701 Quercus lobata HOM05D005894 ORTHO05D007461 2.0e-71 273.5 278 47.5
MBI04_g22377_MAGBIO Magnolia biondii HOM05D005894 ORTHO05D007461 2.6e-71 273.1 293 45.4
Mapoly0044s0088 Marchantia polymorpha HOM05D005894 ORTHO05D007461 3.8e-70 269.2 223 52.5
AagrBONN_evm.TU.Sc2ySwM_228.2264 Anthoceros agrestis HOM05D005894 ORTHO05D007461 6.5e-70 268.5 236 49.2
Gorai.008G129200 Gossypium raimondii HOM05D005894 ORTHO05D007461 8.5e-70 268.1 294 46.3
SalBow3G0292 Salvia bowleyana HOM05D005894 ORTHO05D007461 4.2e-69 265.8 211 55.0
SalBow3G4666 Salvia bowleyana HOM05D005894 ORTHO05D007461 4.2e-69 265.8 211 55.0
Zm00001eb102910 Zea mays HOM05D005894 ORTHO05D007461 3.6e-68 262.7 242 50.0
Zm00001eb102940 Zea mays HOM05D005894 ORTHO05D007461 3.6e-68 262.7 242 50.0
SalBow6G4791 Salvia bowleyana HOM05D005894 ORTHO05D007461 4.0e-67 259.2 293 43.7
unitig_744.g24593 Utricularia gibba HOM05D005894 ORTHO05D007461 8.8e-67 258.1 238 51.3
Os09g0518900 Oryza sativa ssp. japonica HOM05D005894 ORTHO05D007461 2.0e-66 256.9 303 41.9
unitig_744.g24591 Utricularia gibba HOM05D005894 ORTHO05D007461 2.0e-66 256.9 238 50.8
unitig_52.g17564 Utricularia gibba HOM05D005894 ORTHO05D007461 2.6e-66 256.5 253 48.6
Haze_15705 Corylus avellana HOM05D005894 ORTHO05D007461 7.5e-66 255.0 267 46.1
EL10Ac5g10561 Beta vulgaris HOM05D005894 ORTHO05D007461 1.1e-64 251.1 319 42.0
TPR.G25260 Trifolium pratense HOM05D005894 ORTHO05D007461 2.7e-63 246.5 184 56.5
unitig_21.g20086 Utricularia gibba HOM05D005894 ORTHO05D007461 5.9e-63 245.4 239 50.2
Gohir.D07G139300 Gossypium hirsutum HOM05D005894 ORTHO05D007461 4.2e-61 239.2 260 43.8
FAN01G2899 Fragaria x ananassa HOM05D005894 ORTHO05D007461 2.2e-57 226.9 203 48.3
Oeu022737.1 Olea europaea HOM05D005894 ORTHO05D007461 3.1e-56 223.0 150 63.3
unitig_744.g24581 Utricularia gibba HOM05D005894 ORTHO05D007461 2.9e-54 216.5 259 44.0
FAN06G4171 Fragaria x ananassa HOM05D005894 ORTHO05D007461 1.5e-42 177.6 134 56.0
Sc17g0001460 Simmondsia chinensis HOM05D005894 ORTHO05D387453 3.4e-42 176.4 305 31.8
EL10Ac1g00202 Beta vulgaris HOM05D005894 ORTHO05D007461 1.8e-40 170.6 138 58.0
Sc22g0003370 Simmondsia chinensis HOM05D005894 ORTHO05D007461 7.0e-40 168.7 173 50.9
SMO367G0414 Selaginella moellendorffii HOM05D005894 ORTHO05D007461 2.7e-39 166.8 138 56.5
RcHm_v2.0_Chr1g0360831 Rosa chinensis HOM05D005894 ORTHO05D007461 2.0e-34 150.6 199 43.2
RcHm_v2.0_Chr1g0360821 Rosa chinensis HOM05D005894 ORTHO05D007461 2.6e-34 150.2 103 58.3
unitig_21.g20129 Utricularia gibba HOM05D005894 ORTHO05D007461 6.6e-30 135.6 101 59.4
unitig_21.g20130 Utricularia gibba HOM05D005894 ORTHO05D007461 3.9e-14 83.2 136 32.4


User provided reference genes

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