Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0000190 Simmondsia chinensis HOM05D006511 ORTHO05D007567 1.2e-52 209.5 106 100.0
Sc01g0000050 Simmondsia chinensis HOM05D006511 ORTHO05D007567 8.3e-49 196.8 101 98.0
Dinv22148 Davidia involucrata HOM05D006511 ORTHO05D007567 8.9e-27 123.6 104 59.6
RcHm_v2.0_Chr6g0249621 Rosa chinensis HOM05D006511 ORTHO05D007567 1.4e-24 116.3 106 52.8
FvH4_2g00330 Fragaria vesca HOM05D006511 ORTHO05D007567 1.2e-23 113.2 106 51.9
Atru.chr13.2578 Acer truncatum HOM05D006511 ORTHO05D007567 2.0e-23 112.5 99 58.6
CiPaw.03G012800 Carya illinoinensis HOM05D006511 ORTHO05D007567 4.6e-23 111.3 100 56.0
FAN24G0692 Fragaria x ananassa HOM05D006511 ORTHO05D007567 4.6e-23 111.3 104 51.0
QL09p001374 Quercus lobata HOM05D006511 ORTHO05D007567 6.0e-23 110.9 103 56.3
Potri.013G095400 Populus trichocarpa HOM05D006511 ORTHO05D007567 7.8e-23 110.5 104 51.9
MD05G1006300 Malus domestica HOM05D006511 ORTHO05D007567 1.3e-22 109.8 106 53.8
FAN19G0686 Fragaria x ananassa HOM05D006511 ORTHO05D007567 1.7e-22 109.4 106 50.9
TAR636G2957 Trochodendron aralioides HOM05D006511 ORTHO05D007567 1.7e-22 109.4 104 55.8
Sabra13G0081400 Salix brachista HOM05D006511 ORTHO05D007567 2.3e-22 109.0 104 53.8
Cfa008039 Carpinus fangiana HOM05D006511 ORTHO05D007567 1.5e-21 106.3 105 51.4
CANSAT56G0749 Cannabis sativa HOM05D006511 ORTHO05D007567 7.3e-21 104.0 101 52.5
HanXRQChr04g0102471 Helianthus annuus HOM05D006511 ORTHO05D007567 7.3e-21 104.0 106 46.2
Ah.13g067720 Amaranthus hybridus HOM05D006511 ORTHO05D007567 2.8e-20 102.1 98 49.0
HanXRQChr04g0102481 Helianthus annuus HOM05D006511 ORTHO05D007567 4.7e-20 101.3 105 44.8
Hund17299 Selenicereus undatus HOM05D006511 ORTHO05D007567 4.7e-20 101.3 100 51.0
Thecc.08G168400 Theobroma cacao HOM05D006511 ORTHO05D007567 8.1e-20 100.5 98 51.0
Actinidia29367 Actinidia chinensis HOM05D006511 ORTHO05D007567 1.1e-19 100.1 103 51.5
CSS0025861 Camellia sinensis var. sinensis HOM05D006511 ORTHO05D007567 1.4e-19 99.8 94 52.1
Manes.18G109250 Manihot esculenta HOM05D006511 ORTHO05D007567 1.4e-19 99.8 102 51.0
Gohir.D08G249200 Gossypium hirsutum HOM05D006511 ORTHO05D007567 6.8e-19 97.4 97 50.5
Gorai.004G265800 Gossypium raimondii HOM05D006511 ORTHO05D007567 6.8e-19 97.4 97 50.5
Lsat_1_v5_gn_1_24541 Lactuca sativa HOM05D006511 ORTHO05D007567 8.9e-19 97.1 100 45.0
Sed0008597 Sechium edule HOM05D006511 ORTHO05D007567 1.2e-18 96.7 104 46.2
CsaV3_2G033310 Cucumis sativus L. HOM05D006511 ORTHO05D007567 2.6e-18 95.5 104 45.2
SGA_v2.0_scaffold118G32636 Striga asiatica HOM05D006511 ORTHO05D007567 2.6e-18 95.5 101 44.6
Cpa.g.sc142.8 Carica papaya HOM05D006511 ORTHO05D007567 4.4e-18 94.7 98 51.0
Nn5g27238 Nelumbo nucifera HOM05D006511 ORTHO05D007567 4.4e-18 94.7 100 48.0
Phvul.011G215700 Phaseolus vulgaris HOM05D006511 ORTHO05D007567 5.8e-18 94.4 99 46.5
Lj3g0014137 Lotus japonicus HOM05D006511 ORTHO05D007567 9.8e-18 93.6 97 47.4
MELO3C008102.2 Cucumis melo HOM05D006511 ORTHO05D007567 1.3e-17 93.2 96 46.9
THA.LOC104815798 Tarenaya hassleriana HOM05D006511 ORTHO05D007567 1.3e-17 93.2 103 46.6
BraA05t21311Z Brassica rapa HOM05D006511 ORTHO05D007567 1.7e-17 92.8 95 46.3
Sp1g28980 Schrenkiella parvula HOM05D006511 ORTHO05D007567 1.7e-17 92.8 98 44.9
AUR62038542 Chenopodium quinoa HOM05D006511 ORTHO05D007567 2.9e-17 92.0 104 46.2
CARHR032940 Cardamine hirsuta HOM05D006511 ORTHO05D007567 3.7e-17 91.7 99 43.4
FAN20G0885 Fragaria x ananassa HOM05D006511 ORTHO05D007567 3.7e-17 91.7 110 43.6
BcaB03g13696 Brassica carinata HOM05D006511 ORTHO05D007567 4.9e-17 91.3 100 46.0
Eucgr.F04078 Eucalyptus grandis HOM05D006511 ORTHO05D007567 4.9e-17 91.3 99 45.5
VMungo1127G0740 Vigna mungo HOM05D006511 ORTHO05D007567 6.4e-17 90.9 99 44.4
ATR1204G001 Amborella trichopoda HOM05D006511 ORTHO05D007567 8.3e-17 90.5 100 46.0
ClCG11G008290 Citrullus lanatus HOM05D006511 ORTHO05D007567 8.3e-17 90.5 116 42.2
AL1G47890 Arabidopsis lyrata HOM05D006511 ORTHO05D007567 1.1e-16 90.1 98 43.9
Ciclev10023084m.g Citrus clementina HOM05D006511 ORTHO05D007567 1.1e-16 90.1 103 48.5
PGSC0003DMG401019059 Solanum tuberosum HOM05D006511 ORTHO05D007567 1.1e-16 90.1 101 45.5
Sopen11g020540 Solanum pennellii HOM05D006511 ORTHO05D007567 1.4e-16 89.7 101 45.5
AT1G33500 Arabidopsis thaliana HOM05D006511 ORTHO05D007567 1.9e-16 89.4 98 43.9
Carub.0001s3169 Capsella rubella HOM05D006511 ORTHO05D007567 1.9e-16 89.4 98 43.9
DCAR_014062 Daucus carota HOM05D006511 ORTHO05D007567 1.9e-16 89.4 100 41.0
EL10Ac1g01283 Beta vulgaris HOM05D006511 ORTHO05D007567 2.4e-16 89.0 103 43.7
Lalb_Chr19g0131901 Lupinus albus HOM05D006511 ORTHO05D007567 2.4e-16 89.0 97 45.4
Aa31LG6G7970 Aethionema arabicum HOM05D006511 ORTHO05D007567 3.2e-16 88.6 97 45.4
Medtr1g067710 Medicago truncatula HOM05D006511 ORTHO05D007567 4.1e-16 88.2 97 44.3
Solyc11g045100.2 Solanum lycopersicum HOM05D006511 ORTHO05D007567 4.1e-16 88.2 102 44.1
BcaC05g27802 Brassica carinata HOM05D006511 ORTHO05D007567 5.4e-16 87.8 95 43.2
Peaxi162Scf00078g01026 Petunia axillaris HOM05D006511 ORTHO05D007567 5.4e-16 87.8 99 44.4
SalBow7G4276 Salvia bowleyana HOM05D006511 ORTHO05D007567 5.4e-16 87.8 102 44.1
MSTRG.1607 Avicennia marina HOM05D006511 ORTHO05D007567 7.1e-16 87.4 103 45.6
AL1G48040 Arabidopsis lyrata HOM05D006511 ORTHO05D007567 9.2e-16 87.0 102 43.1
arahy.Tifrunner.gnm1.ann1.HN79E8 Arachis hypogaea HOM05D006511 ORTHO05D007567 2.7e-15 85.5 97 42.3
PSO384G4286 Papaver somniferum HOM05D006511 ORTHO05D007567 2.7e-15 85.5 98 40.8
arahy.Tifrunner.gnm1.ann1.FKD4F4 Arachis hypogaea HOM05D006511 ORTHO05D007567 4.6e-15 84.7 97 42.3
Psat7g227400 Pisum sativum HOM05D006511 ORTHO05D007567 6.0e-15 84.3 97 42.3
TPR.G34175 Trifolium pratense HOM05D006511 ORTHO05D007567 1.3e-14 83.2 96 42.7
Gohir.A08G228900 Gossypium hirsutum HOM05D006511 ORTHO05D007567 2.3e-14 82.4 79 50.6
Prupe.8G003600 Prunus persica HOM05D006511 ORTHO05D007567 2.3e-14 82.4 83 53.0
ECA247G1184 Erigeron canadensis HOM05D006511 ORTHO05D007567 6.6e-14 80.9 106 40.6
Nn5g27242 Nelumbo nucifera HOM05D006511 ORTHO05D007567 2.5e-13 79.0 83 45.8
Haze_13990 Corylus avellana HOM05D006511 ORTHO05D007567 4.3e-13 78.2 83 47.0
MBI15_g27821_MAGBIO Magnolia biondii HOM05D006511 ORTHO05D007567 5.6e-13 77.8 76 44.7
MBI15_g27824_MAGBIO Magnolia biondii HOM05D006511 ORTHO05D007567 7.3e-13 77.4 77 45.5
Ca_13616_v3 Cicer arietinum L. HOM05D006511 ORTHO05D007567 1.2e-12 76.6 118 38.1
Ca_30187_v3 Cicer arietinum L. HOM05D006511 ORTHO05D007567 1.2e-12 76.6 118 38.1
Migut.C01397 Erythranthe guttata HOM05D006511 ORTHO05D007567 1.2e-12 76.6 103 36.9
TWI12G0802 Tripterygium wilfordii HOM05D006511 ORTHO05D007567 2.1e-12 75.9 81 48.1
C05p38000 Brassica napus HOM05D006511 ORTHO05D007567 2.8e-12 75.5 120 35.0
BolC5t32531H Brassica oleracea HOM05D006511 ORTHO05D007567 3.6e-12 75.1 120 35.0
Aqoxy6G00041 Aquilegia oxysepala HOM05D006511 ORTHO05D007567 8.1e-12 73.9 99 44.4
COL.COLO4_05796 Corchorus olitorius HOM05D006511 ORTHO05D007567 1.1e-11 73.6 76 51.3
Rhsim02G0172300 Rhododendron simsii HOM05D006511 ORTHO05D007567 1.1e-11 73.6 80 45.0
Glyma.12G241400 Glycine max HOM05D006511 ORTHO05D007567 1.4e-11 73.2 81 43.2
Thhalv10008295m.g Eutrema salsugineum HOM05D006511 ORTHO05D007567 2.3e-11 72.4 99 39.4
Nitab4.5_0000009g0490 Nicotiana tabacum HOM05D006511 ORTHO05D007567 1.2e-10 70.1 83 41.0
Hma1.2p1_1476F.1_g285810 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 1.5e-10 69.7 59 52.5
HPP92_003819 Vanilla planifolia HOM05D006511 ORTHO05D007567 2.9e-09 65.5 93 35.5
Zm00001eb028220 Zea mays HOM05D006511 ORTHO05D007567 8.4e-09 63.9 100 36.0
Haze_13997 Corylus avellana HOM05D006511 ORTHO05D007567 2.4e-08 62.4 65 43.1
Duzib116G0864 Durio zibethinus HOM05D006511 ORTHO05D007567 2.7e-07 58.9 101 36.6
Lj8A308G12 Lonicera japonica HOM05D006511 ORTHO05D007567 2.7e-07 58.9 48 60.4
Nitab4.5_0001489g0030 Nicotiana tabacum HOM05D006511 ORTHO05D007567 2.7e-07 58.9 79 39.2
Haze_13999 Corylus avellana HOM05D006511 ORTHO05D007567 1.3e-06 56.6 55 49.1
vmacro11028 Vaccinium macrocarpon HOM05D006511 ORTHO05D007567 2.3e-06 55.8 56 46.4


User provided reference genes

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