Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow8G4857 Salvia bowleyana HOM05D001046 ORTHO05D005883 0.0e+00 2018.0 1047 100.0
Migut.L01124 Erythranthe guttata HOM05D001046 ORTHO05D005883 0.0e+00 1604.0 1064 77.0
MSTRG.7703 Avicennia marina HOM05D001046 ORTHO05D005883 0.0e+00 1543.5 1008 78.5
Oeu002624.1 Olea europaea HOM05D001046 ORTHO05D005883 0.0e+00 1531.5 1064 73.8
SGA_v2.0_scaffold16G07861 Striga asiatica HOM05D001046 ORTHO05D005883 0.0e+00 1478.4 1129 69.3
Solyc05g010160.3 Solanum lycopersicum HOM05D001046 ORTHO05D005883 0.0e+00 1407.1 1065 66.7
Sopen05g005940 Solanum pennellii HOM05D001046 ORTHO05D005883 0.0e+00 1400.6 1069 66.3
GSVIVG01012023001 Vitis vinifera HOM05D001046 ORTHO05D005883 0.0e+00 1389.0 1064 66.0
HanXRQChr15g0475941 Helianthus annuus HOM05D001046 ORTHO05D005883 0.0e+00 1386.3 1070 66.3
CAN.G184.47 Capsicum annuum HOM05D001046 ORTHO05D005883 0.0e+00 1379.0 1069 65.8
CSS0000214 Camellia sinensis var. sinensis HOM05D001046 ORTHO05D005883 0.0e+00 1378.2 1068 65.8
vmacro18368 Vaccinium macrocarpon HOM05D001046 ORTHO05D005883 0.0e+00 1378.2 1064 67.0
Actinidia30169 Actinidia chinensis HOM05D001046 ORTHO05D005883 0.0e+00 1376.7 1067 66.9
Cc11_g11040 Coffea canephora HOM05D001046 ORTHO05D005883 0.0e+00 1372.8 1085 65.7
Prupe.1G300500 Prunus persica HOM05D001046 ORTHO05D005883 0.0e+00 1369.4 1068 64.2
Lj3C1023G11 Lonicera japonica HOM05D001046 ORTHO05D005883 0.0e+00 1368.2 1066 67.0
ECA246G0060 Erigeron canadensis HOM05D001046 ORTHO05D005883 0.0e+00 1365.9 1066 65.8
Nitab4.5_0006347g0030 Nicotiana tabacum HOM05D001046 ORTHO05D005883 0.0e+00 1365.1 1065 65.8
FvH4_4g28521 Fragaria vesca HOM05D001046 ORTHO05D005883 0.0e+00 1355.9 1065 63.3
Thecc.02G315500 Theobroma cacao HOM05D001046 ORTHO05D005883 0.0e+00 1348.6 1065 63.9
Dinv27415 Davidia involucrata HOM05D001046 ORTHO05D005883 0.0e+00 1347.4 956 71.5
FAN12G0380 Fragaria x ananassa HOM05D001046 ORTHO05D005883 0.0e+00 1343.2 1060 63.1
RcHm_v2.0_Chr4g0436541 Rosa chinensis HOM05D001046 ORTHO05D005883 0.0e+00 1342.4 1070 62.9
Cfa008799 Carpinus fangiana HOM05D001046 ORTHO05D005883 0.0e+00 1341.3 1068 64.0
MD16G1051700 Malus domestica HOM05D001046 ORTHO05D005883 0.0e+00 1334.7 1074 62.8
Gohir.A12G157800 Gossypium hirsutum HOM05D001046 ORTHO05D005883 0.0e+00 1330.5 1068 62.8
Rhsim08G0040600 Rhododendron simsii HOM05D001046 ORTHO05D005883 0.0e+00 1328.9 1165 60.7
Ciclev10030592m.g Citrus clementina HOM05D001046 ORTHO05D005883 0.0e+00 1326.6 1066 63.4
TAR629G1491 Trochodendron aralioides HOM05D001046 ORTHO05D005883 0.0e+00 1322.4 1070 63.5
Duzib248G1558 Durio zibethinus HOM05D001046 ORTHO05D005883 0.0e+00 1321.6 1067 62.8
Gohir.D12G160700 Gossypium hirsutum HOM05D001046 ORTHO05D005883 0.0e+00 1321.2 1066 62.6
Gorai.008G173700 Gossypium raimondii HOM05D001046 ORTHO05D005883 0.0e+00 1320.8 1068 62.5
CANSAT64G1908 Cannabis sativa HOM05D001046 ORTHO05D005883 0.0e+00 1318.9 1066 62.9
Atru.chr11.1438 Acer truncatum HOM05D001046 ORTHO05D005883 0.0e+00 1317.0 1069 62.6
Atru.chr11.1468 Acer truncatum HOM05D001046 ORTHO05D005883 0.0e+00 1317.0 1069 62.6
Nn3g17629 Nelumbo nucifera HOM05D001046 ORTHO05D005883 0.0e+00 1316.2 1069 62.9
FAN17G2519 Fragaria x ananassa HOM05D001046 ORTHO05D005883 0.0e+00 1315.4 1083 61.0
Manes.06G076400 Manihot esculenta HOM05D001046 ORTHO05D005883 0.0e+00 1305.4 1075 62.9
Lsat_1_v5_gn_3_62681 Lactuca sativa HOM05D001046 ORTHO05D005883 0.0e+00 1298.1 1043 64.2
FAN07G2005 Fragaria x ananassa HOM05D001046 ORTHO05D005883 0.0e+00 1297.3 1043 62.5
AUR62002966 Chenopodium quinoa HOM05D001046 ORTHO05D005883 0.0e+00 1297.0 1062 62.1
Peaxi162Scf00188g00433 Petunia axillaris HOM05D001046 ORTHO05D005883 0.0e+00 1289.2 1078 62.9
Potri.T108626 Populus trichocarpa HOM05D001046 ORTHO05D005883 0.0e+00 1284.2 1066 61.4
Hund25120 Selenicereus undatus HOM05D001046 ORTHO05D005883 0.0e+00 1283.5 1041 63.1
Potri.008G109300 Populus trichocarpa HOM05D001046 ORTHO05D005883 0.0e+00 1282.3 1066 61.5
CiPaw.05G117600 Carya illinoinensis HOM05D001046 ORTHO05D005883 0.0e+00 1281.9 1069 61.9
Lj2g0002950 Lotus japonicus HOM05D001046 ORTHO05D005883 0.0e+00 1272.7 1068 60.5
FAN22G0985 Fragaria x ananassa HOM05D001046 ORTHO05D005883 0.0e+00 1270.8 1072 60.4
TWI79G0779 Tripterygium wilfordii HOM05D001046 ORTHO05D005883 0.0e+00 1266.1 1063 61.5
AUR62007774 Chenopodium quinoa HOM05D001046 ORTHO05D005883 0.0e+00 1265.8 1047 62.2
Medtr0010s0220 Medicago truncatula HOM05D001046 ORTHO05D005883 0.0e+00 1260.4 1068 60.7
THA.LOC104808446 Tarenaya hassleriana HOM05D001046 ORTHO05D005883 0.0e+00 1260.4 1071 59.9
PSO017G2748 Papaver somniferum HOM05D001046 ORTHO05D005883 0.0e+00 1254.2 1065 60.9
PSO478G0796 Papaver somniferum HOM05D001046 ORTHO05D005883 0.0e+00 1251.9 1065 60.6
CsaV3_5G033760 Cucumis sativus L. HOM05D001046 ORTHO05D005883 0.0e+00 1249.2 1065 60.1
COL.COLO4_27721 Corchorus olitorius HOM05D001046 ORTHO05D005883 0.0e+00 1248.0 1092 60.3
Eucgr.B03078 Eucalyptus grandis HOM05D001046 ORTHO05D005883 0.0e+00 1246.1 1068 60.8
Glyma.01G093902 Glycine max HOM05D001046 ORTHO05D005883 0.0e+00 1244.6 1068 60.3
CARHR025740 Cardamine hirsuta HOM05D001046 ORTHO05D005883 0.0e+00 1243.0 1068 58.8
BcaB03g14057 Brassica carinata HOM05D001046 ORTHO05D005883 0.0e+00 1242.3 1048 59.3
AT1G26170 Arabidopsis thaliana HOM05D001046 ORTHO05D005883 0.0e+00 1239.2 1070 58.2
Carub.0001s2479 Capsella rubella HOM05D001046 ORTHO05D005883 0.0e+00 1235.3 1047 59.3
Glyma.02G128900 Glycine max HOM05D001046 ORTHO05D005883 0.0e+00 1233.8 1068 59.7
Nitab4.5_0000259g0330 Nicotiana tabacum HOM05D001046 ORTHO05D005883 0.0e+00 1232.6 1058 61.8
Aqoxy3G00421 Aquilegia oxysepala HOM05D001046 ORTHO05D005883 0.0e+00 1231.5 1036 61.4
BcaC06g35168 Brassica carinata HOM05D001046 ORTHO05D005883 0.0e+00 1231.5 1074 57.9
MELO3C012192.2 Cucumis melo HOM05D001046 ORTHO05D005883 0.0e+00 1227.2 1098 58.3
AL1G39580 Arabidopsis lyrata HOM05D001046 ORTHO05D005883 0.0e+00 1220.7 1070 57.6
Sp1g22490 Schrenkiella parvula HOM05D001046 ORTHO05D005883 0.0e+00 1220.7 1068 58.2
Sc14g0007590 Simmondsia chinensis HOM05D001046 ORTHO05D005883 0.0e+00 1219.1 1093 58.5
EL10Ac6g14562 Beta vulgaris HOM05D001046 ORTHO05D005883 0.0e+00 1208.4 1048 59.8
PGR102G1932 Punica granatum HOM05D001046 ORTHO05D005883 0.0e+00 1207.6 1063 58.7
DCAR_023709 Daucus carota HOM05D001046 ORTHO05D005883 0.0e+00 1203.3 1048 60.4
A07p12760 Brassica napus HOM05D001046 ORTHO05D005883 0.0e+00 1200.7 1110 55.8
Phvul.003G034100 Phaseolus vulgaris HOM05D001046 ORTHO05D005883 0.0e+00 1196.4 1068 58.5
Sabra08G0083000 Salix brachista HOM05D001046 ORTHO05D005883 0.0e+00 1184.1 1143 55.6
ATR0691G253 Amborella trichopoda HOM05D001046 ORTHO05D005883 0.0e+00 1176.0 1063 56.5
Sed0023728 Sechium edule HOM05D001046 ORTHO05D005883 0.0e+00 1175.6 1030 58.9
Aa31LG7G8840 Aethionema arabicum HOM05D001046 ORTHO05D005883 0.0e+00 1168.7 1087 56.4
Ah.03g138130 Amaranthus hybridus HOM05D001046 ORTHO05D005883 0.0e+00 1157.1 1095 56.3
Lalb_Chr04g0255081 Lupinus albus HOM05D001046 ORTHO05D005883 0.0e+00 1151.0 982 60.6
ClCG05G023270 Citrullus lanatus HOM05D001046 ORTHO05D005883 0.0e+00 1143.6 1087 56.1
unitig_699.g19897 Utricularia gibba HOM05D001046 ORTHO05D005883 0.0e+00 1129.0 1055 59.0
C07p19150 Brassica napus HOM05D001046 ORTHO05D005883 0.0e+00 1125.9 1082 54.3
VMungo1215G2127 Vigna mungo HOM05D001046 ORTHO05D005883 0.0e+00 1118.6 917 61.7
Thhalv10006742m.g Eutrema salsugineum HOM05D001046 ORTHO05D005883 0.0e+00 1114.8 955 58.2
HPP92_018028 Vanilla planifolia HOM05D001046 ORTHO05D005883 0.0e+00 1103.6 1077 52.5
BolC7t42425H Brassica oleracea HOM05D001046 ORTHO05D005883 2.9e-311 1072.0 1109 51.9
MBI15_g18373_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 1.1e-275 953.7 838 60.1
Pp3c3_32130 Physcomitrium patens HOM05D001046 ORTHO05D005883 2.5e-270 936.0 1083 47.5
QL03p044469 Quercus lobata HOM05D001046 ORTHO05D005883 7.5e-243 844.7 821 55.5
CDE04G1715 Ceratophyllum demersum HOM05D001046 ORTHO05D005883 1.4e-241 840.5 990 46.0
Zm00001eb380420 Zea mays HOM05D001046 ORTHO05D005883 1.6e-208 730.7 754 52.7
Psat0s251g0080 Pisum sativum HOM05D001046 ORTHO05D005883 1.2e-205 721.1 658 56.7
arahy.Tifrunner.gnm1.ann1.X1G7WL Arachis hypogaea HOM05D001046 ORTHO05D005883 8.9e-204 714.9 682 56.0
arahy.Tifrunner.gnm1.ann1.L5PVB5 Arachis hypogaea HOM05D001046 ORTHO05D005883 2.6e-203 713.4 680 56.2
CBR_g23906 Chara braunii HOM05D001046 ORTHO05D005883 4.6e-200 702.6 1090 36.3
CBR_g22326 Chara braunii HOM05D001046 ORTHO05D005883 7.6e-195 685.3 1089 36.2
SGA_v2.0_scaffold21G09423 Striga asiatica HOM05D001046 ORTHO05D005883 4.2e-185 652.9 616 58.6
SGA_v2.0_scaffold32G13147 Striga asiatica HOM05D001046 ORTHO05D005883 3.3e-182 643.3 626 57.2
Mapoly0176s0015 Marchantia polymorpha HOM05D001046 ORTHO05D005883 3.0e-175 620.2 699 46.5
SGA_v2.0_scaffold32G13175 Striga asiatica HOM05D001046 ORTHO05D005883 8.2e-157 558.9 1065 38.0
SMO144G0070 Selaginella moellendorffii HOM05D001046 ORTHO05D005883 1.9e-153 547.7 1037 34.2
Psat0s251g0040 Pisum sativum HOM05D001046 ORTHO05D005883 7.2e-153 545.8 413 66.8
arahy.Tifrunner.gnm1.ann1.4S8EHX Arachis hypogaea HOM05D001046 ORTHO05D005883 9.7e-142 508.8 390 61.0
arahy.Tifrunner.gnm1.ann1.A78PMJ Arachis hypogaea HOM05D001046 ORTHO05D005883 3.7e-141 506.9 390 60.8
Haze_11811 Corylus avellana HOM05D001046 ORTHO05D005883 6.5e-130 469.5 370 65.7
SEGI_15773 Sequoiadendron giganteum HOM05D001046 ORTHO05D005883 2.3e-127 461.1 418 57.2
MCO16G117 Micromonas commoda HOM05D001046 ORTHO05D005883 6.8e-119 433.0 975 30.7
Ca_30097_v3 Cicer arietinum L. HOM05D001046 ORTHO05D005883 4.7e-104 383.6 446 49.6
SEGI_02691 Sequoiadendron giganteum HOM05D001046 ORTHO05D005883 3.4e-94 350.9 275 60.4
Cre08.g377450 Chlamydomonas reinhardtii HOM05D001046 ORTHO05D005883 2.3e-87 328.2 1026 25.5
MBI15_g34975_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 2.4e-84 318.2 304 54.9
Hma1.2p1_0189F.1_g082730 Hydrangea macrophylla HOM05D001046 ORTHO05D005883 2.9e-77 294.7 212 67.0
MBI15_g45230_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 2.4e-71 275.0 282 52.1
SGA_v2.0_scaffold32G13185 Striga asiatica HOM05D001046 ORTHO05D005883 2.3e-58 231.9 360 44.4
QL03p044493 Quercus lobata HOM05D001046 ORTHO05D005883 7.4e-57 226.9 191 62.3
PRCOL_00002313 Prasinoderma coloniale HOM05D001046 ORTHO05D005883 1.9e-52 212.2 963 24.5
Psat1g160480 Pisum sativum HOM05D001046 ORTHO05D005883 1.1e-49 203.0 154 64.9
SGA_v2.0_scaffold32G13101 Striga asiatica HOM05D001046 ORTHO05D005883 2.5e-49 201.8 228 53.1
Psat6g019360 Pisum sativum HOM05D001046 ORTHO05D005883 1.1e-44 186.4 124 77.4
SEGI_13623 Sequoiadendron giganteum HOM05D001046 ORTHO05D005883 9.3e-44 183.3 193 51.3
Psat0s439g0040 Pisum sativum HOM05D001046 ORTHO05D005883 1.2e-43 183.0 134 67.2
Cpa.g.sc1.256 Carica papaya HOM05D001046 ORTHO05D005883 7.2e-36 157.1 132 59.8
Lju470A13T26 Lonicera japonica HOM05D001046 ORTHO05D005883 4.3e-33 147.9 119 61.3
Psat0ss9065g0080 Pisum sativum HOM05D003718 ORTHO05D004402 1.5e-25 122.9 134 52.2
VMungo1215G0456 Vigna mungo HOM05D001046 ORTHO05D005883 9.1e-23 113.6 129 48.1
QL03p044436 Quercus lobata HOM05D001046 ORTHO05D000006 1.2e-22 113.2 92 60.9
Psat5g215000 Pisum sativum HOM05D001046 ORTHO05D015028 1.4e-18 99.8 68 61.8
RcHm_v2.0_Chr1g0334921 Rosa chinensis HOM05D001046 ORTHO05D005883 6.7e-18 97.4 68 67.6
Os06g0274100 Oryza sativa ssp. japonica HOM05D001046 ORTHO05D005883 1.3e-16 93.2 77 63.6
Psat5g172200 Pisum sativum HOM05D001670 ORTHO05D015028 8.2e-16 90.5 73 54.8
Psat0s3411g0120 Pisum sativum HOM05D001046 ORTHO05D015028 9.1e-15 87.0 77 51.9
Lju470A14T37 Lonicera japonica HOM05D001046 ORTHO05D005883 1.6e-14 86.3 99 47.5
Sabra10G0102000 Salix brachista HOM05D001046 ORTHO05D005883 3.5e-14 85.1 73 61.6
Gohir.A10G119000 Gossypium hirsutum HOM05D001046 ORTHO05D005883 1.1e-12 80.1 85 50.6
MBI15_g18372_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 1.9e-12 79.3 100 45.0
Psat1g050560 Pisum sativum HOM05D001046 ORTHO05D050390 2.5e-12 79.0 50 78.0
MELO3C034612.2 Cucumis melo HOM05D001046 ORTHO05D005883 4.2e-12 78.2 106 40.6
Gohir.A13G103301 Gossypium hirsutum HOM05D001046 ORTHO05D005883 2.1e-11 75.9 56 62.5
TPR.G36091 Trifolium pratense HOM05D001046 ORTHO05D005883 3.6e-11 75.1 127 39.4
Gohir.A06G118000 Gossypium hirsutum HOM05D001046 ORTHO05D005883 3.0e-10 72.0 54 63.0
PGSC0003DMG400025125 Solanum tuberosum HOM05D001046 ORTHO05D005883 4.0e-10 71.6 37 86.5
Lju470A13T24 Lonicera japonica HOM05D001046 ORTHO05D005883 5.2e-10 71.2 159 33.3
QL03p044430 Quercus lobata HOM05D001046 ORTHO05D005883 2.0e-09 69.3 38 78.9
Lalb_Chr04g0255061 Lupinus albus HOM05D001046 ORTHO05D005883 1.3e-08 66.6 37 81.1
CsaV3_3G044730 Cucumis sativus L. HOM05D001046 ORTHO05D005883 1.1e-07 63.5 55 56.4
Lj2g0010388 Lotus japonicus HOM05D001046 ORTHO05D005883 1.6e-06 59.7 54 55.6
Ca_05116_v3 Cicer arietinum L. HOM05D001046 ORTHO05D005883 3.5e-06 58.5 37 70.3
Lj5g0008258 Lotus japonicus HOM05D001046 ORTHO05D005883 7.7e-06 57.4 39 69.2


User provided reference genes

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