Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 0.0e+00 1411.0 697 100.0
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 0.0e+00 1299.3 697 90.0
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 0.0e+00 1284.2 698 89.0
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1258.4 698 87.2
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 0.0e+00 1247.3 696 86.8
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1228.0 696 85.2
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 0.0e+00 1226.5 698 85.0
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1225.7 697 84.8
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 0.0e+00 1221.8 693 84.1
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 0.0e+00 1218.4 696 84.8
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 0.0e+00 1218.4 723 83.0
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 0.0e+00 1217.6 696 84.5
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 0.0e+00 1216.8 696 84.6
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 0.0e+00 1216.4 694 83.3
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 0.0e+00 1209.5 696 84.3
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 0.0e+00 1205.3 698 82.8
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 0.0e+00 1204.9 694 83.3
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 0.0e+00 1199.9 694 82.7
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 0.0e+00 1197.2 694 82.0
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1194.5 747 79.1
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1191.0 694 81.7
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 0.0e+00 1189.9 696 82.3
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1187.9 694 81.4
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 0.0e+00 1186.8 694 81.0
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1184.5 698 80.8
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1181.0 700 80.6
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 0.0e+00 1179.1 694 82.4
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 0.0e+00 1177.9 694 80.4
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 0.0e+00 1176.4 691 81.3
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1175.6 695 80.9
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 0.0e+00 1172.5 694 81.8
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1172.5 695 81.4
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 0.0e+00 1170.2 694 80.7
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 0.0e+00 1169.5 694 80.1
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1164.8 696 80.7
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 0.0e+00 1164.1 692 80.2
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 0.0e+00 1163.3 694 79.3
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1163.3 692 81.2
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 0.0e+00 1159.4 695 80.7
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1156.4 694 79.1
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1156.0 694 79.0
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1154.4 695 79.4
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 0.0e+00 1151.0 719 78.2
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1146.3 695 78.7
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 0.0e+00 1146.0 694 79.8
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 0.0e+00 1146.0 699 78.0
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1145.2 696 79.0
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1144.8 696 78.7
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 0.0e+00 1144.0 697 79.1
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1143.6 694 79.3
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 0.0e+00 1143.3 673 81.9
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 0.0e+00 1142.9 694 79.0
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 0.0e+00 1142.1 694 78.1
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 0.0e+00 1141.7 700 78.7
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 0.0e+00 1140.9 696 78.7
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1140.6 694 78.1
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 0.0e+00 1139.8 694 79.0
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 0.0e+00 1137.1 694 79.5
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1135.6 694 78.1
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 0.0e+00 1134.8 694 78.4
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1134.0 695 78.4
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 0.0e+00 1133.6 694 78.2
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1132.9 694 78.5
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1130.9 694 79.1
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 0.0e+00 1130.2 695 78.0
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1129.4 694 78.0
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1129.0 694 78.2
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 0.0e+00 1128.6 695 77.1
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 0.0e+00 1128.6 694 76.8
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 0.0e+00 1127.9 694 76.9
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 0.0e+00 1126.7 695 78.3
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 0.0e+00 1119.8 695 76.0
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 0.0e+00 1116.3 696 79.2
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 0.0e+00 1114.0 694 77.1
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 0.0e+00 1112.8 694 75.9
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1110.9 694 75.4
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1110.9 694 75.8
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 0.0e+00 1109.7 647 81.1
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1109.7 694 75.5
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1109.4 692 77.9
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 0.0e+00 1107.8 696 76.0
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 0.0e+00 1105.5 696 75.7
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1105.1 718 75.5
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1104.4 695 77.8
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 0.0e+00 1101.7 694 75.2
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 0.0e+00 1099.3 687 75.3
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1090.9 740 73.6
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1090.9 694 76.2
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 0.0e+00 1082.8 694 75.6
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1079.3 694 76.2
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1078.2 713 72.2
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 4.7e-310 1067.4 683 76.4
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 8.0e-310 1066.6 674 74.3
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 2.3e-309 1065.1 683 76.3
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 8.9e-309 1063.1 698 75.2
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 1.7e-307 1058.9 695 75.0
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 4.1e-306 1054.3 611 83.0
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 8.9e-301 1036.6 700 72.3
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 1.9e-295 1018.8 694 72.0
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 2.5e-295 1018.5 703 70.4
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 7.8e-289 996.9 688 69.6
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 1.5e-284 982.6 581 80.2
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 1.6e-273 946.0 638 72.1
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 9.3e-258 893.6 540 79.3
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 3.9e-256 888.3 708 65.7
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 5.1e-248 861.3 581 71.1
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 3.7e-246 855.1 699 59.8
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 4.5e-236 821.6 539 74.6
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 9.7e-231 803.9 705 56.2
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 9.7e-231 803.9 705 56.2
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.4e-229 800.0 707 56.2
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 1.9e-226 789.6 700 55.7
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 8.8e-224 780.8 701 55.2
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 5.7e-215 751.5 711 54.6
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 1.1e-213 747.3 467 79.2
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 4.6e-180 635.6 388 78.9
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 1.4e-165 587.4 377 77.2
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 9.9e-159 564.7 726 43.7
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 3.9e-139 499.6 504 55.0
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 5.2e-107 392.9 764 34.6
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 7.5e-106 389.0 248 75.8
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 8.8e-99 365.5 273 64.1
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 9.8e-98 362.1 344 56.4
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 1.8e-96 357.8 820 32.0
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 1.6e-87 328.2 182 83.5
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 1.1e-75 288.9 247 61.1
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 4.9e-73 280.0 246 60.6
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 2.7e-71 274.2 182 72.5
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 7.8e-71 272.7 166 74.7
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 6.6e-62 243.0 612 31.2
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 2.8e-60 237.7 235 55.3
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 2.9e-49 201.1 125 73.6
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 1.5e-45 188.7 138 71.0
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 2.4e-43 181.4 145 66.2
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 6.0e-39 166.8 235 42.6
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 5.3e-35 153.7 97 75.3
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 2.2e-33 148.3 75 92.0
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 3.2e-32 144.4 76 86.8
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 2.0e-26 125.2 84 66.7
TAR625G0301 Trochodendron aralioides HOM05D005163 ORTHO05D006462 3.4e-18 97.8 86 53.5
SHI08598 Sapria himalayana HOM05D005163 ORTHO05D006462 1.3e-17 95.9 85 57.6
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 8.8e-14 83.2 50 78.0
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 7.4e-13 80.1 50 72.0
MBI01_g27920_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D000004 3.9e-06 57.8 33 75.8


User provided reference genes

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