Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow8G4458 Salvia bowleyana HOM05D005295 ORTHO05D005962 2.1e-183 645.6 333 100.0
Migut.M00784 Erythranthe guttata HOM05D005295 ORTHO05D005962 5.3e-102 375.2 262 74.4
SGA_v2.0_scaffold34G13800 Striga asiatica HOM05D005295 ORTHO05D005962 4.5e-93 345.5 257 70.8
SGA_v2.0_scaffold73G24237 Striga asiatica HOM05D005295 ORTHO05D005962 9.7e-88 327.8 247 68.0
Oeu019302.2 Olea europaea HOM05D005295 ORTHO05D005962 3.2e-83 312.8 241 68.0
CSS0001236 Camellia sinensis var. sinensis HOM05D005295 ORTHO05D005962 2.0e-80 303.5 248 64.5
unitig_0.g1149 Utricularia gibba HOM05D005295 ORTHO05D005962 1.1e-78 297.7 262 58.8
GSVIVG01014296001 Vitis vinifera HOM05D005295 ORTHO05D005962 9.1e-78 294.7 232 65.5
CANSAT56G1083 Cannabis sativa HOM05D005295 ORTHO05D005962 7.7e-77 291.6 238 61.8
Lsat_1_v5_gn_5_128440 Lactuca sativa HOM05D005295 ORTHO05D005962 1.7e-76 290.4 244 60.7
Actinidia12794 Actinidia chinensis HOM05D005295 ORTHO05D005962 2.5e-75 286.6 239 63.2
Solyc12g013910.2 Solanum lycopersicum HOM05D005295 ORTHO05D005962 5.5e-75 285.4 239 65.3
Sopen12g005670 Solanum pennellii HOM05D005295 ORTHO05D005962 5.5e-75 285.4 239 64.9
PGSC0003DMG400015366 Solanum tuberosum HOM05D005295 ORTHO05D005962 2.1e-74 283.5 239 64.4
CiPaw.11G171800 Carya illinoinensis HOM05D005295 ORTHO05D005962 6.1e-74 282.0 232 62.9
MD03G1231400 Malus domestica HOM05D005295 ORTHO05D005962 6.1e-74 282.0 239 64.0
MELO3C025603.2 Cucumis melo HOM05D005295 ORTHO05D005962 8.0e-74 281.6 235 63.0
ClCG11G017890 Citrullus lanatus HOM05D005295 ORTHO05D005962 3.0e-73 279.6 238 60.5
Rhsim06G0201600 Rhododendron simsii HOM05D005295 ORTHO05D005962 6.8e-73 278.5 236 61.9
CsaV3_4G033520 Cucumis sativus L. HOM05D005295 ORTHO05D005962 8.9e-73 278.1 233 62.7
Hma1.2p1_0387F.1_g141920 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 1.2e-72 277.7 234 63.2
Lalb_Chr20g0109501 Lupinus albus HOM05D005295 ORTHO05D005962 2.6e-72 276.6 233 62.2
MSTRG.6822 Avicennia marina HOM05D005295 ORTHO05D005962 3.4e-72 276.2 209 68.4
Cc05_g11790 Coffea canephora HOM05D005295 ORTHO05D005962 4.4e-72 275.8 246 58.9
Haze_09452 Corylus avellana HOM05D005295 ORTHO05D005962 4.4e-72 275.8 233 61.8
Manes.03G106500 Manihot esculenta HOM05D005295 ORTHO05D005962 9.8e-72 274.6 235 61.7
Medtr2g078650 Medicago truncatula HOM05D005295 ORTHO05D005962 2.8e-71 273.1 236 60.6
Lj8A154T78 Lonicera japonica HOM05D005295 ORTHO05D005962 3.7e-71 272.7 259 56.4
Lj3g0021836 Lotus japonicus HOM05D005295 ORTHO05D005962 1.4e-70 270.8 239 60.7
TWI38G0013 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 1.4e-70 270.8 238 58.8
arahy.Tifrunner.gnm1.ann1.B1NQ7W Arachis hypogaea HOM05D005295 ORTHO05D005962 3.2e-70 269.6 240 61.2
Prupe.4G176600 Prunus persica HOM05D005295 ORTHO05D005962 4.1e-70 269.2 239 61.5
Cfa020562 Carpinus fangiana HOM05D005295 ORTHO05D005962 5.4e-70 268.9 233 59.7
VMungo1080G0752 Vigna mungo HOM05D005295 ORTHO05D005962 5.4e-70 268.9 233 60.1
Sabra16G0260000 Salix brachista HOM05D005295 ORTHO05D005962 9.2e-70 268.1 236 58.1
Gorai.009G376000 Gossypium raimondii HOM05D005295 ORTHO05D005962 1.2e-69 267.7 242 57.9
arahy.Tifrunner.gnm1.ann1.3CLR9I Arachis hypogaea HOM05D005295 ORTHO05D005962 1.6e-69 267.3 240 60.4
Gohir.A04G035200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 2.0e-69 266.9 241 58.5
Thecc.07G095500 Theobroma cacao HOM05D005295 ORTHO05D005962 3.5e-69 266.2 242 59.1
Psat0s1402g0040 Pisum sativum HOM05D005295 ORTHO05D005962 5.9e-69 265.4 235 59.1
ECA234G3281 Erigeron canadensis HOM05D005295 ORTHO05D005962 1.0e-68 264.6 238 58.0
Potri.011G116200 Populus trichocarpa HOM05D005295 ORTHO05D005962 1.3e-68 264.2 233 58.8
Sabra11G0101800 Salix brachista HOM05D005295 ORTHO05D005962 1.7e-68 263.8 233 58.8
Potri.001G396900 Populus trichocarpa HOM05D005295 ORTHO05D005962 2.3e-68 263.5 232 58.6
Aa31LG5G9970 Aethionema arabicum HOM05D005295 ORTHO05D005962 2.9e-68 263.1 234 57.7
COL.COLO4_36711 Corchorus olitorius HOM05D005295 ORTHO05D005962 3.9e-68 262.7 237 59.1
Glyma.13G273800 Glycine max HOM05D005295 ORTHO05D005962 3.9e-68 262.7 239 58.6
Phvul.005G075000 Phaseolus vulgaris HOM05D005295 ORTHO05D005962 3.9e-68 262.7 233 58.8
Sed0001385 Sechium edule HOM05D005295 ORTHO05D005962 3.9e-68 262.7 238 58.0
Duzib213G0204 Durio zibethinus HOM05D005295 ORTHO05D005962 5.0e-68 262.3 256 55.9
HanXRQChr12g0361161 Helianthus annuus HOM05D005295 ORTHO05D005962 1.1e-67 261.2 238 58.0
CAN.G213.18 Capsicum annuum HOM05D005295 ORTHO05D005962 1.5e-67 260.8 242 60.3
Cpa.g.sc622.2 Carica papaya HOM05D005295 ORTHO05D005962 1.9e-67 260.4 236 57.2
Aqoxy1G02337 Aquilegia oxysepala HOM05D005295 ORTHO05D005962 2.5e-67 260.0 233 57.1
Eucgr.F01159 Eucalyptus grandis HOM05D005295 ORTHO05D005962 4.3e-67 259.2 237 59.1
PGR083G0729 Punica granatum HOM05D005295 ORTHO05D005962 5.6e-67 258.8 238 58.8
Ca_03531_v3 Cicer arietinum L. HOM05D005295 ORTHO05D005962 2.8e-66 256.5 239 58.6
Nn1g04175 Nelumbo nucifera HOM05D005295 ORTHO05D005962 3.6e-66 256.1 241 56.4
Peaxi162Scf00000g00314 Petunia axillaris HOM05D005295 ORTHO05D005962 3.6e-66 256.1 240 58.8
Ah.06g184530 Amaranthus hybridus HOM05D005295 ORTHO05D005962 3.1e-65 253.1 248 56.9
TWI39G0015 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 5.2e-65 252.3 238 56.7
Carub.0007s1331 Capsella rubella HOM05D005295 ORTHO05D005962 3.4e-64 249.6 234 54.3
Thhalv10026112m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 3.4e-64 249.6 239 55.2
THA.LOC104811877 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 2.2e-63 246.9 232 57.3
Nitab4.5_0000332g0010 Nicotiana tabacum HOM05D005295 ORTHO05D005962 4.9e-63 245.7 256 56.6
AL7G25230 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 6.4e-63 245.4 237 54.4
BcaNung06688 Brassica carinata HOM05D005295 ORTHO05D005962 1.4e-62 244.2 241 53.5
Sp7g25480 Schrenkiella parvula HOM05D005295 ORTHO05D005962 1.9e-62 243.8 239 54.0
A01p18770 Brassica napus HOM05D005295 ORTHO05D005962 2.4e-62 243.4 241 53.1
C01p23710 Brassica napus HOM05D005295 ORTHO05D005962 2.4e-62 243.4 238 52.9
CARHR235220 Cardamine hirsuta HOM05D005295 ORTHO05D005962 7.0e-62 241.9 235 54.0
BcaNung06687 Brassica carinata HOM05D005295 ORTHO05D005962 9.2e-62 241.5 238 52.5
Ciclev10009383m.g Citrus clementina HOM05D005295 ORTHO05D005962 1.2e-61 241.1 236 53.0
Gohir.D05G348200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 1.2e-61 241.1 242 54.1
BolC1t02323H Brassica oleracea HOM05D005295 ORTHO05D005962 2.0e-61 240.4 238 52.5
BraA01t01821Z Brassica rapa HOM05D005295 ORTHO05D005962 2.0e-61 240.4 235 53.6
PSO675G2991 Papaver somniferum HOM05D005295 ORTHO05D005962 4.6e-61 239.2 247 52.6
Hund22882 Selenicereus undatus HOM05D005295 ORTHO05D005962 4.6e-61 239.2 254 52.4
EL10Ac4g08225 Beta vulgaris HOM05D005295 ORTHO05D005962 6.0e-61 238.8 245 53.9
AT4G27540 Arabidopsis thaliana HOM05D005295 ORTHO05D005962 1.3e-60 237.7 237 53.2
TPR.G7946 Trifolium pratense HOM05D005295 ORTHO05D005962 8.6e-60 235.0 235 54.9
MBI02_g22345_MAGBIO Magnolia biondii HOM05D005295 ORTHO05D005962 1.9e-59 233.8 232 54.3
AUR62036172 Chenopodium quinoa HOM05D005295 ORTHO05D005962 2.1e-58 230.3 255 51.8
Ciclev10009380m.g Citrus clementina HOM05D005295 ORTHO05D005962 1.4e-57 227.6 236 50.8
DCAR_013119 Daucus carota HOM05D005295 ORTHO05D005962 1.3e-55 221.1 185 59.5
Sc16g0007150 Simmondsia chinensis HOM05D005295 ORTHO05D005962 4.9e-55 219.2 218 54.6
RcHm_v2.0_Chr5g0032761 Rosa chinensis HOM05D005295 ORTHO05D005962 7.1e-54 215.3 245 50.2
QL08p022700 Quercus lobata HOM05D005295 ORTHO05D005962 9.2e-54 214.9 348 38.8
FAN21G0215 Fragaria x ananassa HOM05D005295 ORTHO05D005962 3.0e-52 209.9 232 50.9
CDE05G1939 Ceratophyllum demersum HOM05D005295 ORTHO05D005962 6.6e-52 208.8 229 48.9
FvH4_3g19520 Fragaria vesca HOM05D005295 ORTHO05D005962 1.1e-51 208.0 232 50.4
FAN25G2205 Fragaria x ananassa HOM05D005295 ORTHO05D005962 3.3e-51 206.5 232 50.0
HPP92_003730 Vanilla planifolia HOM05D005295 ORTHO05D005962 5.6e-51 205.7 254 46.1
Atru.chr2.2424 Acer truncatum HOM05D005295 ORTHO05D005962 7.3e-51 205.3 261 46.0
CDE05G3097 Ceratophyllum demersum HOM05D006331 ORTHO05D008043 4.0e-49 199.5 229 48.0
Zm00001eb231100 Zea mays HOM05D005295 ORTHO05D005962 6.8e-49 198.7 238 47.9
BolC2t07912H Brassica oleracea HOM05D005295 ORTHO05D005962 2.6e-48 196.8 232 47.4
BcaC03g14369 Brassica carinata HOM05D005295 ORTHO05D005962 1.3e-47 194.5 232 47.0
AUR62019458 Chenopodium quinoa HOM05D005295 ORTHO05D005962 8.3e-47 191.8 233 49.4
FAN11G0135 Fragaria x ananassa HOM05D005295 ORTHO05D005962 1.4e-46 191.0 233 48.9
C02p17850 Brassica napus HOM05D005295 ORTHO05D005962 3.2e-46 189.9 234 47.4
BcaB05g22086 Brassica carinata HOM05D005295 ORTHO05D005962 4.1e-46 189.5 229 45.9
BcaC03g14372 Brassica carinata HOM05D005295 ORTHO05D005962 2.3e-44 183.7 236 47.0
BolC2t07916H Brassica oleracea HOM05D005295 ORTHO05D005962 2.3e-44 183.7 236 47.0
vmacro11885 Vaccinium macrocarpon HOM05D005295 ORTHO05D005962 4.3e-43 179.5 233 48.1
C02p17830 Brassica napus HOM05D005295 ORTHO05D005962 1.2e-40 171.4 184 49.5
ATR0150G019 Amborella trichopoda HOM05D005295 ORTHO05D005962 2.6e-40 170.2 243 42.4
BraA02t06134Z Brassica rapa HOM05D005295 ORTHO05D005962 2.2e-39 167.2 153 54.9
A02p10710 Brassica napus HOM05D005295 ORTHO05D005962 1.1e-38 164.9 191 47.1
Lj1C840T8 Lonicera japonica HOM05D005295 ORTHO05D005962 1.5e-35 154.5 126 64.3
Eucgr.F01198 Eucalyptus grandis HOM05D005295 ORTHO05D005962 9.6e-35 151.8 146 56.8
SEGI_06803 Sequoiadendron giganteum HOM05D005295 ORTHO05D005962 2.1e-34 150.6 236 36.9
Thhalv10015755m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 3.6e-34 149.8 202 43.6
Dinv14935 Davidia involucrata HOM05D005295 ORTHO05D005962 6.2e-34 149.1 136 64.0
Ciclev10010240m.g Citrus clementina HOM05D005295 ORTHO05D005962 6.0e-29 132.5 236 38.1
SMO285G0011 Selaginella moellendorffii HOM05D005295 ORTHO05D005962 3.9e-28 129.8 232 32.8
Os09g0134400 Oryza sativa ssp. japonica HOM05D005295 ORTHO05D005962 4.8e-26 122.9 236 33.9
Mapoly0124s0020 Marchantia polymorpha HOM05D005295 ORTHO05D005962 2.0e-24 117.5 236 33.9
Pp3c9_10810 Physcomitrium patens HOM05D005295 ORTHO05D005962 2.0e-24 117.5 258 31.4
Dinv12314 Davidia involucrata HOM05D005295 ORTHO05D005962 1.6e-21 107.8 134 49.3
MD06G1175000 Malus domestica HOM05D005295 ORTHO05D005962 4.6e-21 106.3 114 52.6
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 1.0e-20 105.1 123 52.0
BcaNung07036 Brassica carinata HOM05D005295 ORTHO05D005962 4.0e-17 93.2 86 51.2
Carub.0003s1487 Capsella rubella HOM05D005295 ORTHO05D005962 2.9e-15 87.0 182 35.2
BcaB04g20941 Brassica carinata HOM05D001464 ORTHO05D005962 6.0e-13 79.3 139 38.1
A01p38800 Brassica napus HOM05D005295 ORTHO05D005962 6.0e-13 79.3 117 42.7
BraA01t03927Z Brassica rapa HOM05D005295 ORTHO05D005962 6.0e-13 79.3 117 42.7
BcaC09g48479 Brassica carinata HOM05D005295 ORTHO05D005962 3.0e-12 77.0 117 41.9
BolC1t04893H Brassica oleracea HOM05D005295 ORTHO05D005962 3.0e-12 77.0 117 41.9
C01p49340 Brassica napus HOM05D005295 ORTHO05D005962 1.1e-11 75.1 117 41.0
Hma1.2p1_0387F.1_g141930 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 7.4e-11 72.4 63 57.1
AL3G27610 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 1.6e-10 71.2 125 36.8
Duzib268G1416 Durio zibethinus HOM05D005295 ORTHO05D005962 6.2e-10 69.3 198 31.8
CBR_g39602 Chara braunii HOM05D005295 ORTHO05D005962 9.0e-09 65.5 281 26.0
Cc11_g09910 Coffea canephora HOM05D005295 ORTHO05D005962 2.9e-07 60.5 37 70.3
BcaB05g22090 Brassica carinata HOM05D005295 ORTHO05D005962 6.5e-07 59.3 57 52.6
BcaB05g22088 Brassica carinata HOM05D005295 ORTHO05D005962 3.2e-06 57.0 95 41.1
AL1G49440 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 4.2e-06 56.6 40 62.5
AL4G33490 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 4.2e-06 56.6 40 62.5
AL6G44190 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 4.2e-06 56.6 40 62.5
AL6G51010 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 4.2e-06 56.6 40 62.5
AL7G20040 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 4.2e-06 56.6 40 62.5
AL3G43900 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 9.3e-06 55.5 40 62.5


User provided reference genes

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