Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow8G4457 Salvia bowleyana HOM05D006037 ORTHO05D007384 0.0e+00 1083.2 529 100.0
SalBow8G2496 Salvia bowleyana HOM05D006037 ORTHO05D007384 0.0e+00 1075.1 529 99.4
SGA_v2.0_scaffold38G14964 Striga asiatica HOM05D006037 ORTHO05D000229 2.7e-217 758.8 514 70.8
MSTRG.7652 Avicennia marina HOM05D006037 ORTHO05D007384 2.8e-214 748.8 473 75.7
Cc11_g09830 Coffea canephora HOM05D006037 ORTHO05D007384 7.0e-197 691.0 517 63.2
Migut.L01043 Erythranthe guttata HOM05D006037 ORTHO05D007384 2.0e-191 672.9 481 68.4
CSS0045711 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 2.0e-188 662.9 483 66.5
CSS0026176 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 3.8e-187 658.7 480 66.5
Sopen05g004860 Solanum pennellii HOM05D006037 ORTHO05D007384 5.5e-186 654.8 518 63.1
CAN.G610.57 Capsicum annuum HOM05D006037 ORTHO05D007384 9.4e-186 654.1 513 63.7
FvH4_4g26975 Fragaria vesca HOM05D006037 ORTHO05D007384 2.0e-183 646.4 521 60.8
Ciclev10014910m.g Citrus clementina HOM05D006037 ORTHO05D007384 5.7e-183 644.8 519 60.1
unitig_747.g21203 Utricularia gibba HOM05D006037 ORTHO05D007384 5.7e-183 644.8 536 59.7
MD16G1039700 Malus domestica HOM05D006037 ORTHO05D007384 1.3e-182 643.7 532 59.8
TAR622G1007 Trochodendron aralioides HOM05D006037 ORTHO05D007384 1.7e-182 643.3 520 61.5
Rhsim09G0105100 Rhododendron simsii HOM05D006037 ORTHO05D007384 2.2e-182 642.9 515 62.3
GSVIVG01011862001 Vitis vinifera HOM05D006037 ORTHO05D007384 8.3e-182 641.0 472 66.9
Nitab4.5_0001616g0090 Nicotiana tabacum HOM05D006037 ORTHO05D007384 1.1e-181 640.6 566 58.7
Nitab4.5_0005528g0030 Nicotiana tabacum HOM05D006037 ORTHO05D007384 1.4e-181 640.2 564 58.9
Lsat_1_v5_gn_3_57741 Lactuca sativa HOM05D006037 ORTHO05D007384 1.8e-181 639.8 485 62.5
Aqoxy3G00235 Aquilegia oxysepala HOM05D006037 ORTHO05D007384 2.4e-181 639.4 515 61.2
ECA246G3707 Erigeron canadensis HOM05D006037 ORTHO05D007384 3.1e-181 639.0 514 60.5
Potri.010G122100 Populus trichocarpa HOM05D006037 ORTHO05D007384 3.1e-181 639.0 514 60.7
CiPaw.05G240100 Carya illinoinensis HOM05D006037 ORTHO05D007384 7.0e-181 637.9 514 61.1
arahy.Tifrunner.gnm1.ann1.NA36PT Arachis hypogaea HOM05D006037 ORTHO05D007384 1.2e-180 637.1 513 60.6
FAN12G3404 Fragaria x ananassa HOM05D006037 ORTHO05D007384 1.2e-180 637.1 538 58.9
Peaxi162Scf00753g00122 Petunia axillaris HOM05D006037 ORTHO05D007384 7.7e-180 634.4 465 67.5
arahy.Tifrunner.gnm1.ann1.CBB0MY Arachis hypogaea HOM05D006037 ORTHO05D007384 1.0e-179 634.0 513 60.4
Solyc05g009140.3 Solanum lycopersicum HOM05D006037 ORTHO05D007384 8.6e-179 630.9 476 64.9
Sabra10G0092200 Salix brachista HOM05D006037 ORTHO05D007384 1.1e-178 630.6 514 60.1
DCAR_007255 Daucus carota HOM05D006037 ORTHO05D007384 1.5e-178 630.2 487 61.8
FAN22G1751 Fragaria x ananassa HOM05D006037 ORTHO05D007384 5.5e-178 628.2 568 56.7
Prupe.1G314400 Prunus persica HOM05D006037 ORTHO05D007384 1.4e-176 623.6 469 63.5
RcHm_v2.0_Chr4g0434781 Rosa chinensis HOM05D006037 ORTHO05D007384 1.4e-176 623.6 469 64.2
MD13G1039000 Malus domestica HOM05D006037 ORTHO05D007384 4.4e-175 618.6 459 64.3
Medtr1g110300 Medicago truncatula HOM05D006037 ORTHO05D007384 3.7e-174 615.5 488 61.7
HanXRQChr17g0551931 Helianthus annuus HOM05D006037 ORTHO05D007384 1.8e-173 613.2 472 62.9
Lalb_Chr06g0165941 Lupinus albus HOM05D006037 ORTHO05D007384 1.8e-173 613.2 473 64.1
Actinidia14911 Actinidia chinensis HOM05D006037 ORTHO05D007384 2.4e-173 612.8 516 60.1
Thecc.02G224800 Theobroma cacao HOM05D006037 ORTHO05D007384 1.6e-172 610.1 470 63.6
Sabra10G0092100 Salix brachista HOM05D006037 ORTHO05D007384 3.5e-172 609.0 463 64.1
Lj5g0002773 Lotus japonicus HOM05D006037 ORTHO05D007384 5.9e-172 608.2 472 62.9
Duzib248G1272 Durio zibethinus HOM05D006037 ORTHO05D007384 7.8e-172 607.8 513 59.6
Nn3g17908 Nelumbo nucifera HOM05D006037 ORTHO05D007384 1.7e-171 606.7 484 59.3
PSO478G0980 Papaver somniferum HOM05D006037 ORTHO05D007384 2.3e-171 606.3 521 58.9
PSO017G5347 Papaver somniferum HOM05D006037 ORTHO05D007384 3.8e-171 605.5 522 58.4
Potri.010G122000 Populus trichocarpa HOM05D006037 ORTHO05D007384 5.0e-171 605.1 470 63.4
Manes.14G105200 Manihot esculenta HOM05D006037 ORTHO05D007384 1.1e-170 604.0 470 61.9
Gorai.005G192200 Gossypium raimondii HOM05D006037 ORTHO05D007384 2.5e-170 602.8 512 60.2
Atru.chr11.165 Acer truncatum HOM05D006037 ORTHO05D007384 1.2e-169 600.5 466 63.7
TPR.G4859 Trifolium pratense HOM05D006037 ORTHO05D007384 2.1e-169 599.7 472 61.4
Psat6g225720 Pisum sativum HOM05D006037 ORTHO05D007384 6.1e-169 598.2 469 61.8
Glyma.20G118000 Glycine max HOM05D006037 ORTHO05D007384 1.4e-168 597.0 474 61.2
Haze_00627 Corylus avellana HOM05D006037 ORTHO05D007384 4.0e-168 595.5 530 57.4
Gohir.A03G147800 Gossypium hirsutum HOM05D006037 ORTHO05D007384 1.2e-167 594.0 470 63.0
Gohir.D02G171000 Gossypium hirsutum HOM05D006037 ORTHO05D007384 5.7e-167 591.7 470 62.6
vmacro10580 Vaccinium macrocarpon HOM05D006037 ORTHO05D007384 4.9e-166 588.6 589 53.3
Eucgr.B02995 Eucalyptus grandis HOM05D006037 ORTHO05D007384 1.8e-165 586.6 474 61.0
COL.COLO4_38215 Corchorus olitorius HOM05D006037 ORTHO05D007384 3.2e-165 585.9 466 62.0
CANSAT01G2894 Cannabis sativa HOM05D006037 ORTHO05D007384 1.6e-164 583.6 516 56.2
MBI09_g07743_MAGBIO Magnolia biondii HOM05D006037 ORTHO05D007384 1.6e-164 583.6 484 59.3
PGR102G0142 Punica granatum HOM05D006037 ORTHO05D007384 2.0e-164 583.2 521 57.4
THA.LOC104821921 Tarenaya hassleriana HOM05D006037 ORTHO05D007384 2.3e-163 579.7 524 55.9
Phvul.007G029700 Phaseolus vulgaris HOM05D006037 ORTHO05D007384 9.5e-162 574.3 478 58.6
VMungo0720G2449 Vigna mungo HOM05D006037 ORTHO05D007384 1.4e-160 570.5 468 59.4
Thhalv10007371m.g Eutrema salsugineum HOM05D006037 ORTHO05D007384 2.6e-159 566.2 486 56.6
EL10Ac6g14338 Beta vulgaris HOM05D006037 ORTHO05D007384 3.7e-158 562.4 487 57.7
Carub.0001s2514 Capsella rubella HOM05D006037 ORTHO05D007384 5.4e-157 558.5 518 55.2
Ca_11141_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 8.6e-155 551.2 492 56.9
Ca_11146_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 8.6e-155 551.2 492 56.9
BolC5t31246H Brassica oleracea HOM05D006037 ORTHO05D007384 1.9e-154 550.1 486 56.4
AL1G39950 Arabidopsis lyrata HOM05D006037 ORTHO05D007384 4.3e-154 548.9 486 55.6
Aa31LG7G9120 Aethionema arabicum HOM05D006037 ORTHO05D007384 5.6e-154 548.5 487 56.3
AT1G25375 Arabidopsis thaliana HOM05D006037 ORTHO05D007384 9.5e-154 547.7 511 54.6
C05p25140 Brassica napus HOM05D006037 ORTHO05D007384 9.5e-154 547.7 486 56.2
A09p39240 Brassica napus HOM05D006037 ORTHO05D007384 1.6e-153 547.0 522 53.8
BraA09t39423Z Brassica rapa HOM05D006037 ORTHO05D007384 1.6e-153 547.0 522 53.8
TAR622G1402 Trochodendron aralioides HOM05D006037 ORTHO05D007384 3.6e-153 545.8 428 62.6
BcaC05g26674 Brassica carinata HOM05D006037 ORTHO05D007384 2.6e-151 539.7 486 55.1
Lj3C1012T17 Lonicera japonica HOM05D006037 ORTHO05D007384 4.4e-151 538.9 514 55.1
AUR62037301 Chenopodium quinoa HOM05D006037 ORTHO05D007384 9.9e-151 537.7 630 47.0
AUR62002836 Chenopodium quinoa HOM05D006037 ORTHO05D007384 1.7e-150 537.0 516 54.8
AUR62037303 Chenopodium quinoa HOM05D006037 ORTHO05D007384 1.4e-149 533.9 467 57.2
AUR62002838 Chenopodium quinoa HOM05D006037 ORTHO05D007384 6.0e-148 528.5 467 56.5
ATR1125G090 Amborella trichopoda HOM05D006037 ORTHO05D007384 1.0e-147 527.7 472 55.5
Cpa.g.sc65.52 Carica papaya HOM05D006037 ORTHO05D007384 3.2e-141 506.1 516 50.0
Sc11g0003550 Simmondsia chinensis HOM05D006037 ORTHO05D007384 3.5e-140 502.7 346 68.5
TWI31G0909 Tripterygium wilfordii HOM05D006037 ORTHO05D007384 1.0e-139 501.1 509 53.6
Zm00001eb125200 Zea mays HOM05D006037 ORTHO05D007384 5.1e-139 498.8 492 51.6
Os01g0133500 Oryza sativa ssp. japonica HOM05D006037 ORTHO05D007384 8.7e-139 498.0 495 51.7
CDE12G0065 Ceratophyllum demersum HOM05D006037 ORTHO05D007384 2.0e-135 486.9 542 48.7
Aa31LG7G9130 Aethionema arabicum HOM05D006037 ORTHO05D007384 1.1e-130 471.1 434 53.2
BcaC05g26470 Brassica carinata HOM05D006037 ORTHO05D007384 2.1e-129 466.8 462 52.8
PGSC0003DMG401014554 Solanum tuberosum HOM05D006037 ORTHO05D007384 1.6e-113 414.1 355 58.9
Dinv21054 Davidia involucrata HOM05D006037 ORTHO05D007384 2.5e-106 390.2 327 59.3
Mapoly0042s0034 Marchantia polymorpha HOM05D006037 ORTHO05D007384 6.3e-105 385.6 537 39.5
AagrBONN_evm.TU.Sc2ySwM_117.146 Anthoceros agrestis HOM05D006037 ORTHO05D007384 8.2e-97 358.6 491 40.5
QL01p040434 Quercus lobata HOM05D006037 ORTHO05D007384 1.5e-95 354.4 299 60.2
CARHR026110 Cardamine hirsuta HOM05D006037 ORTHO05D007384 2.6e-95 353.6 355 51.3
Pp3c15_25940 Physcomitrium patens HOM05D006037 ORTHO05D007384 6.5e-94 349.0 489 39.1
FAN07G1837 Fragaria x ananassa HOM05D006037 ORTHO05D007384 3.2e-93 346.7 291 59.5
RcHm_v2.0_Chr7g0243441 Rosa chinensis HOM05D006037 ORTHO05D007384 3.9e-83 313.2 306 53.6
RcHm_v2.0_Chr5g0042931 Rosa chinensis HOM05D006037 ORTHO05D007384 2.6e-82 310.5 306 53.3
SMO164G0020 Selaginella moellendorffii HOM05D006037 ORTHO05D007384 2.8e-81 307.0 295 49.5
HPP92_008271 Vanilla planifolia HOM05D006037 ORTHO05D007384 2.8e-81 307.0 219 63.5
Ah.02g127690 Amaranthus hybridus HOM05D006037 ORTHO05D007384 2.9e-78 297.0 507 36.7
RcHm_v2.0_Chr6g0261541 Rosa chinensis HOM05D006037 ORTHO05D007384 1.1e-77 295.0 266 56.4
BcaC05g26471 Brassica carinata HOM05D006037 ORTHO05D007384 2.9e-70 270.4 239 56.9
QL01p040421 Quercus lobata HOM05D006037 ORTHO05D007384 4.2e-69 266.5 316 47.2
CBR_g162 Chara braunii HOM05D006037 ORTHO05D007384 1.7e-57 228.0 335 39.4
QL02p008150 Quercus lobata HOM05D006037 ORTHO05D007384 6.0e-47 193.0 200 51.0
QL02p008285 Quercus lobata HOM05D000178 ORTHO05D007384 3.6e-36 157.1 193 45.6
Hma1.2p1_1024F.1_g249220 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 5.2e-35 153.3 85 83.5
Hma1.2p1_1024F.1_g249230 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 1.5e-34 151.8 350 31.7
Oeu054976.1 Olea europaea HOM05D006037 ORTHO05D007384 1.2e-28 132.1 76 78.9
QL02p008246 Quercus lobata HOM05D006037 ORTHO05D007384 2.3e-22 111.3 92 57.6
SEGI_35277 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 2.1e-20 104.8 94 51.1
RcHm_v2.0_Chr2g0108931 Rosa chinensis HOM05D006037 ORTHO05D007384 4.9e-17 93.6 77 58.4
SEGI_36031 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 3.2e-16 90.9 113 41.6
HPP92_008272 Vanilla planifolia HOM05D006037 ORTHO05D007384 4.2e-16 90.5 100 46.0
CSS0019302 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 3.0e-14 84.3 51 76.5
CSS0004694 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 3.9e-14 84.0 51 74.5
CSS0027478 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 5.6e-13 80.1 51 74.5
CSS0028236 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 5.6e-13 80.1 51 74.5
CSS0047987 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 5.6e-13 80.1 51 76.5
QL02p008273 Quercus lobata HOM05D006037 ORTHO05D007384 4.8e-12 77.0 40 82.5
SEGI_25624 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 2.4e-11 74.7 141 30.5
Lsat_1_v5_gn_7_98681 Lactuca sativa HOM05D006037 ORTHO05D007384 6.9e-11 73.2 76 46.1
PRCOL_00001454 Prasinoderma coloniale HOM05D020990 ORTHO05D028642 5.4e-08 63.5 242 25.2
ECA247G1102 Erigeron canadensis HOM05D003337 ORTHO05D003808 9.3e-08 62.8 54 63.0
QL02p008170 Quercus lobata HOM05D006037 ORTHO05D007384 6.7e-06 56.6 101 39.6


User provided reference genes

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