Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow8G3623 Salvia bowleyana HOM05D004441 ORTHO05D003109 4.2e-139 498.0 259 100.0
SalBow8G4382 Salvia bowleyana HOM05D004441 ORTHO05D003109 4.2e-139 498.0 259 100.0
Migut.M01162 Erythranthe guttata HOM05D004441 ORTHO05D003109 2.7e-53 213.0 292 55.5
SGA_v2.0_scaffold100G29660 Striga asiatica HOM05D004441 ORTHO05D003109 7.9e-45 184.9 266 51.9
Lj1A1210T53 Lonicera japonica HOM05D004441 ORTHO05D003109 2.3e-44 183.3 285 48.8
Oeu026007.1 Olea europaea HOM05D004441 ORTHO05D003109 4.8e-42 175.6 293 48.1
Nitab4.5_0001820g0050 Nicotiana tabacum HOM05D004441 ORTHO05D003109 1.8e-41 173.7 271 48.7
Cc00_g11510 Coffea canephora HOM05D004441 ORTHO05D003109 6.5e-39 165.2 295 45.1
Nitab4.5_0007319g0010 Nicotiana tabacum HOM05D004441 ORTHO05D003109 4.2e-38 162.5 270 47.4
Hma1.2p1_0191F.1_g083410 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 9.4e-38 161.4 283 47.3
Hma1.2p1_2209F.1_g317155 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 9.4e-38 161.4 283 47.3
Dinv40519 Davidia involucrata HOM05D004441 ORTHO05D003109 2.7e-37 159.8 273 48.4
Oeu029188.1 Olea europaea HOM05D004441 ORTHO05D003109 9.1e-33 144.8 290 43.1
Solyc02g078760.1 Solanum lycopersicum HOM05D004441 ORTHO05D003109 9.1e-33 144.8 277 44.4
TAR629G3100 Trochodendron aralioides HOM05D004441 ORTHO05D003109 1.0e-31 141.4 304 42.4
Dinv39787 Davidia involucrata HOM05D004441 ORTHO05D003109 5.0e-31 139.0 282 40.8
VMungo0540G1643 Vigna mungo HOM05D004441 ORTHO05D003109 3.2e-30 136.3 285 43.5
PGSC0003DMG400022372 Solanum tuberosum HOM05D004441 ORTHO05D003109 4.2e-30 136.0 239 44.8
Sopen02g023590 Solanum pennellii HOM05D004441 ORTHO05D003109 5.5e-30 135.6 276 42.8
SGA_v2.0_scaffold22G09746 Striga asiatica HOM05D004441 ORTHO05D003109 5.5e-30 135.6 256 44.9
Peaxi162Scf00612g00043 Petunia axillaris HOM05D004441 ORTHO05D003109 9.4e-30 134.8 266 43.2
DCAR_004123 Daucus carota HOM05D004441 ORTHO05D003109 1.6e-29 134.0 283 41.7
Medtr2g012750 Medicago truncatula HOM05D004441 ORTHO05D003109 2.1e-29 133.7 285 43.9
Phvul.006G189700 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 4.7e-29 132.5 278 43.2
TPR.G36719 Trifolium pratense HOM05D004441 ORTHO05D003109 4.7e-29 132.5 292 42.8
Ca_00297_v3 Cicer arietinum L. HOM05D004441 ORTHO05D003109 5.7e-27 125.6 286 41.6
Glyma.13G244100 Glycine max HOM05D004441 ORTHO05D003109 9.7e-27 124.8 287 43.6
Thecc.06G194800 Theobroma cacao HOM05D004441 ORTHO05D003109 9.7e-27 124.8 305 40.0
Psat1g207120 Pisum sativum HOM05D004441 ORTHO05D003109 1.7e-26 124.0 290 42.1
Duzib160G0195 Durio zibethinus HOM05D004441 ORTHO05D003109 1.4e-25 120.9 308 39.3
Lj6g0023239 Lotus japonicus HOM05D004441 ORTHO05D003109 1.8e-25 120.6 294 39.5
Hma1.2p1_0835F.1_g225850 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 7.0e-25 118.6 269 40.9
Hma1.2p1_0835F.1_g225855 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 7.0e-25 118.6 269 40.9
TWI63G0258 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 3.5e-24 116.3 295 40.7
arahy.Tifrunner.gnm1.ann1.KXRU9A Arachis hypogaea HOM05D004441 ORTHO05D003109 7.7e-24 115.2 294 41.2
Duzib192G0975 Durio zibethinus HOM05D004441 ORTHO05D003109 7.7e-24 115.2 316 38.9
Prupe.4G040000 Prunus persica HOM05D004441 ORTHO05D003109 7.7e-24 115.2 329 35.6
Rhsim13G0175700 Rhododendron simsii HOM05D004441 ORTHO05D003109 1.0e-23 114.8 284 39.1
TAR626G0020 Trochodendron aralioides HOM05D004441 ORTHO05D003109 1.0e-23 114.8 268 42.9
COL.COLO4_31538 Corchorus olitorius HOM05D004441 ORTHO05D003109 1.3e-23 114.4 326 38.7
Sc17g0006420 Simmondsia chinensis HOM05D004441 ORTHO05D003109 1.3e-23 114.4 326 39.9
CiPaw.09G160900 Carya illinoinensis HOM05D004441 ORTHO05D003109 5.0e-23 112.5 294 40.5
Glyma.15G069600 Glycine max HOM05D004441 ORTHO05D003109 6.5e-23 112.1 283 41.0
ECA234G2831 Erigeron canadensis HOM05D004441 ORTHO05D003109 8.5e-23 111.7 292 38.0
Lsat_1_v5_gn_7_20000 Lactuca sativa HOM05D004441 ORTHO05D003109 1.5e-22 110.9 279 39.4
Gohir.D05G166400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 1.9e-22 110.5 316 38.9
Gohir.A05G163400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 3.2e-22 109.8 316 38.6
Gorai.009G171500 Gossypium raimondii HOM05D004441 ORTHO05D003109 3.2e-22 109.8 315 38.1
Eucgr.D00694 Eucalyptus grandis HOM05D004441 ORTHO05D003109 4.2e-22 109.4 308 37.3
FAN16G1227 Fragaria x ananassa HOM05D004441 ORTHO05D003109 7.2e-22 108.6 302 37.7
FAN25G3261 Fragaria x ananassa HOM05D004441 ORTHO05D003109 7.2e-22 108.6 302 37.4
Actinidia05598 Actinidia chinensis HOM05D004441 ORTHO05D003109 2.1e-21 107.1 247 43.7
Gohir.A06G124300 Gossypium hirsutum HOM05D004441 ORTHO05D003109 2.7e-21 106.7 282 38.7
Lsat_1_v5_gn_4_55461 Lactuca sativa HOM05D004441 ORTHO05D003109 2.7e-21 106.7 280 40.4
Aqoxy4G01294 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 6.1e-21 105.5 320 37.5
Gorai.010G150800 Gossypium raimondii HOM05D004441 ORTHO05D003109 6.1e-21 105.5 282 38.7
ClCG03G005640 Citrullus lanatus HOM05D004441 ORTHO05D003109 4.0e-20 102.8 301 36.2
Gohir.D06G129200 Gossypium hirsutum HOM05D004441 ORTHO05D003109 4.0e-20 102.8 278 39.6
FAN11G1619 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.2e-19 101.3 303 37.3
FAN21G2327 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.2e-19 101.3 296 36.5
PSO675G8062 Papaver somniferum HOM05D004441 ORTHO05D003109 3.4e-19 99.8 337 34.7
MD10G1300500 Malus domestica HOM05D004441 ORTHO05D003109 5.7e-19 99.0 334 36.5
Cfa000385 Carpinus fangiana HOM05D004441 ORTHO05D003109 7.5e-19 98.6 306 36.3
FvH4_3g04520 Fragaria vesca HOM05D004441 ORTHO05D003109 9.8e-19 98.2 303 36.3
TAR627G0319 Trochodendron aralioides HOM05D004441 ORTHO05D003109 9.8e-19 98.2 230 38.7
Lalb_Chr15g0089961 Lupinus albus HOM05D004441 ORTHO05D003109 3.7e-18 96.3 284 39.1
MBI18_g13205_MAGBIO Magnolia biondii HOM05D004441 ORTHO05D003109 3.7e-18 96.3 299 36.5
Cpa.g.sc34.119 Carica papaya HOM05D004441 ORTHO05D003109 6.3e-18 95.5 303 36.0
Ciclev10015894m.g Citrus clementina HOM05D004441 ORTHO05D003109 8.3e-18 95.1 338 36.1
Lj1A733T64 Lonicera japonica HOM05D009304 ORTHO05D003109 8.3e-18 95.1 304 36.5
Potri.011G045700 Populus trichocarpa HOM05D004441 ORTHO05D003109 1.4e-17 94.4 323 37.5
PGR004G2153 Punica granatum HOM05D004441 ORTHO05D003109 1.4e-17 94.4 335 37.9
ECA236G4168 Erigeron canadensis HOM05D004441 ORTHO05D003109 2.4e-17 93.6 281 35.9
TWI38G0459 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 2.4e-17 93.6 313 35.1
Lsat_1_v5_gn_4_70241 Lactuca sativa HOM05D009304 ORTHO05D003109 3.1e-17 93.2 285 36.5
QL08p037640 Quercus lobata HOM05D010652 ORTHO05D003109 3.1e-17 93.2 313 36.7
Sed0013174 Sechium edule HOM05D004441 ORTHO05D003109 7.0e-17 92.0 258 39.1
Nn1g06687 Nelumbo nucifera HOM05D004441 ORTHO05D003109 9.1e-17 91.7 291 37.8
Sabra11G0031800 Salix brachista HOM05D004441 ORTHO05D003109 9.1e-17 91.7 324 34.6
Aqoxy1G02647 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 1.2e-16 91.3 333 33.9
Haze_06542 Corylus avellana HOM05D004441 ORTHO05D003109 1.6e-16 90.9 308 36.0
Haze_13109 Corylus avellana HOM05D010652 ORTHO05D003109 1.6e-16 90.9 281 36.3
arahy.Tifrunner.gnm1.ann1.7X1CID Arachis hypogaea HOM05D010177 ORTHO05D003109 2.0e-16 90.5 326 35.6
CSS0013822 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 4.5e-16 89.4 294 38.4
Ah.09g235850 Amaranthus hybridus HOM05D004441 ORTHO05D003109 1.3e-15 87.8 292 36.0
Manes.17G041200 Manihot esculenta HOM05D004441 ORTHO05D003109 2.3e-15 87.0 320 34.4
arahy.Tifrunner.gnm1.ann1.W0S7NR Arachis hypogaea HOM05D004441 ORTHO05D003109 2.9e-15 86.7 197 44.2
RcHm_v2.0_Chr5g0007441 Rosa chinensis HOM05D004441 ORTHO05D003109 2.9e-15 86.7 323 34.1
CsaV3_1G011910 Cucumis sativus L. HOM05D004441 ORTHO05D003109 3.8e-15 86.3 306 34.3
CSS0028025 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 5.0e-15 85.9 294 38.1
Lalb_Chr20g0122111 Lupinus albus HOM05D004441 ORTHO05D003109 5.0e-15 85.9 302 35.8
Cfa014564 Carpinus fangiana HOM05D010652 ORTHO05D003109 8.6e-15 85.1 286 34.3
PSO541G1557 Papaver somniferum HOM05D004441 ORTHO05D003109 1.9e-14 84.0 336 32.4
DCAR_009737 Daucus carota HOM05D009304 ORTHO05D003109 2.5e-14 83.6 294 35.7
Sabra04G0022600 Salix brachista HOM05D004441 ORTHO05D003109 2.5e-14 83.6 328 34.5
Sabra05G0071200 Salix brachista HOM05D010652 ORTHO05D003109 2.5e-14 83.6 272 35.7
Actinidia11074 Actinidia chinensis HOM05D002331 ORTHO05D003109 3.3e-14 83.2 276 37.7
Glyma.13G184100 Glycine max HOM05D004441 ORTHO05D003109 4.2e-14 82.8 280 35.7
THA.LOC104809557 Tarenaya hassleriana HOM05D004441 ORTHO05D003109 5.5e-14 82.4 301 36.2
CANSAT64G2194 Cannabis sativa HOM05D010652 ORTHO05D003109 9.5e-14 81.6 322 31.7
Dinv23691 Davidia involucrata HOM05D009304 ORTHO05D003109 2.1e-13 80.5 280 36.1
CDE04G0293 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 1.0e-12 78.2 271 36.5
Migut.H01500 Erythranthe guttata HOM05D004441 ORTHO05D003109 1.4e-12 77.8 116 51.7
Potri.004G037100 Populus trichocarpa HOM05D004441 ORTHO05D003109 1.4e-12 77.8 323 32.5
MELO3C007307.2 Cucumis melo HOM05D004441 ORTHO05D003109 1.8e-12 77.4 290 36.6
Sed0025630 Sechium edule HOM05D004441 ORTHO05D003109 1.8e-12 77.4 244 37.3
Dinv01395 Davidia involucrata HOM05D009304 ORTHO05D003109 2.3e-12 77.0 248 38.3
Manes.13G149800 Manihot esculenta HOM05D010652 ORTHO05D003109 2.3e-12 77.0 287 36.6
Cc05_g06660 Coffea canephora HOM05D009304 ORTHO05D003109 3.0e-12 76.6 323 35.6
Eucgr.A01789 Eucalyptus grandis HOM05D004441 ORTHO05D003109 3.0e-12 76.6 315 35.6
CsaV3_6G049880 Cucumis sativus L. HOM05D004441 ORTHO05D003109 5.2e-12 75.9 290 36.6
CARHR011330 Cardamine hirsuta HOM05D004441 ORTHO05D003109 6.8e-12 75.5 287 34.8
FvH4_6g44980 Fragaria vesca HOM05D010652 ORTHO05D003109 6.8e-12 75.5 328 32.3
Medtr4g089190 Medicago truncatula HOM05D004441 ORTHO05D003109 6.8e-12 75.5 278 35.6
Manes.16G023200 Manihot esculenta HOM05D004441 ORTHO05D003109 8.9e-12 75.1 322 32.3
ClCG00G003130 Citrullus lanatus HOM05D004441 ORTHO05D003109 1.2e-11 74.7 287 34.8
ClCG01G022730 Citrullus lanatus HOM05D004441 ORTHO05D003109 1.2e-11 74.7 287 34.8
Solyc07g054560.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 1.2e-11 74.7 314 33.8
Sopen07g028460 Solanum pennellii HOM05D009304 ORTHO05D003109 1.5e-11 74.3 305 31.8
BraA01t03127Z Brassica rapa HOM05D004441 ORTHO05D003109 2.6e-11 73.6 283 33.6
PGSC0003DMG400018324 Solanum tuberosum HOM05D009304 ORTHO05D003109 2.6e-11 73.6 306 31.7
Lalb_Chr18g0059831 Lupinus albus HOM05D004441 ORTHO05D003109 3.4e-11 73.2 301 32.9
VMungo1080G0072 Vigna mungo HOM05D010177 ORTHO05D003109 3.4e-11 73.2 262 36.3
Nitab4.5_0003018g0090 Nicotiana tabacum HOM05D009304 ORTHO05D003109 4.4e-11 72.8 312 34.6
Peaxi162Scf00007g00287 Petunia axillaris HOM05D009304 ORTHO05D003109 4.4e-11 72.8 258 36.4
Atru.chr10.1971 Acer truncatum HOM05D004441 ORTHO05D003109 9.8e-11 71.6 292 32.9
ECA234G0694 Erigeron canadensis HOM05D009304 ORTHO05D003109 9.8e-11 71.6 293 34.1
Sed0017971 Sechium edule HOM05D002331 ORTHO05D002624 9.8e-11 71.6 283 31.8
BcaC09g49327 Brassica carinata HOM05D004441 ORTHO05D003109 1.3e-10 71.2 283 33.2
C01p37890 Brassica napus HOM05D004441 ORTHO05D003109 1.3e-10 71.2 283 33.2
BolC1t03749H Brassica oleracea HOM05D004441 ORTHO05D003109 1.3e-10 71.2 283 33.2
Lalb_Chr19g0135401 Lupinus albus HOM05D010177 ORTHO05D003109 3.7e-10 69.7 304 32.6
Glyma.13G299800 Glycine max HOM05D010177 ORTHO05D003109 6.3e-10 68.9 267 35.6
Phvul.002G224300 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 8.3e-10 68.6 284 34.5
A01p29970 Brassica napus HOM05D004441 ORTHO05D003109 1.1e-09 68.2 291 34.0
VMungo0251G2507 Vigna mungo HOM05D004441 ORTHO05D003109 1.1e-09 68.2 273 37.4
Nitab4.5_0001833g0010 Nicotiana tabacum HOM05D021131 ORTHO05D022971 1.4e-09 67.8 338 30.8
Aa31LG2G9430 Aethionema arabicum HOM05D004441 ORTHO05D003109 1.8e-09 67.4 249 36.1
ClCG02G001220 Citrullus lanatus HOM05D032711 ORTHO05D003109 1.8e-09 67.4 280 30.0
Psat5g270560 Pisum sativum HOM05D010177 ORTHO05D003109 2.4e-09 67.0 293 32.4
Sed0005410 Sechium edule HOM05D002331 ORTHO05D002624 2.4e-09 67.0 278 31.3
AT1G11125 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 3.2e-09 66.6 186 37.6
FAN14G1127 Fragaria x ananassa HOM05D010652 ORTHO05D003109 4.1e-09 66.2 328 31.4
Sp2g03290 Schrenkiella parvula HOM05D004441 ORTHO05D003109 4.1e-09 66.2 281 34.5
AL1G22120 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 5.4e-09 65.9 186 37.6
BraA06t23983Z Brassica rapa HOM05D004441 ORTHO05D003109 5.4e-09 65.9 293 31.7
AL2G15180 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 9.2e-09 65.1 260 36.9
Lsat_1_v5_gn_8_132261 Lactuca sativa HOM05D009304 ORTHO05D003109 9.2e-09 65.1 274 34.3
PGSC0003DMG400005055 Solanum tuberosum HOM05D021131 ORTHO05D022971 9.2e-09 65.1 97 46.4
A06p07830 Brassica napus HOM05D004441 ORTHO05D003109 1.2e-08 64.7 293 32.4
Nitab4.5_0008104g0020 Nicotiana tabacum HOM05D021131 ORTHO05D022971 1.6e-08 64.3 96 46.9
Solyc03g006600.1 Solanum lycopersicum HOM05D021131 ORTHO05D022971 2.0e-08 63.9 97 46.4
Sopen03g002610 Solanum pennellii HOM05D021131 ORTHO05D022971 2.0e-08 63.9 97 46.4
FAN09G1981 Fragaria x ananassa HOM05D010652 ORTHO05D003109 2.7e-08 63.5 327 29.7
Psat0s2678g0120 Pisum sativum HOM05D004441 ORTHO05D003109 2.7e-08 63.5 271 34.3
BolC5t29682H Brassica oleracea HOM05D004441 ORTHO05D003109 3.5e-08 63.2 195 35.9
PGR042G0321 Punica granatum HOM05D004441 ORTHO05D003109 3.5e-08 63.2 310 32.6
Carub.0002s0400 Capsella rubella HOM05D004441 ORTHO05D003109 5.9e-08 62.4 262 36.3
C05p09410 Brassica napus HOM05D004441 ORTHO05D003109 7.8e-08 62.0 195 35.4
Ca_20682_v3 Cicer arietinum L. HOM05D010177 ORTHO05D003109 7.8e-08 62.0 301 32.6
Psat7g199680 Pisum sativum HOM05D010177 ORTHO05D003109 7.8e-08 62.0 318 31.8
CDE02G3343 Ceratophyllum demersum HOM05D004441 ORTHO05D003109 1.0e-07 61.6 252 35.3
CsaV3_7G004220 Cucumis sativus L. HOM05D032711 ORTHO05D003109 1.7e-07 60.8 261 31.0
Potri.005G086300 Populus trichocarpa HOM05D010652 ORTHO05D003109 1.7e-07 60.8 233 33.5
AT1G61170 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 2.3e-07 60.5 261 35.6
PGR042G3342 Punica granatum HOM05D004441 ORTHO05D003109 2.3e-07 60.5 290 33.4
Carub.0001s1070 Capsella rubella HOM05D004441 ORTHO05D003109 3.9e-07 59.7 210 34.8
Hma1.2p1_0875F.1_g231510 Hydrangea macrophylla HOM05D009304 ORTHO05D003109 3.9e-07 59.7 293 33.4
Glyma.U031310 Glycine max HOM05D010177 ORTHO05D003109 5.0e-07 59.3 296 31.4
Nitab4.5_0002370g0010 Nicotiana tabacum HOM05D009304 ORTHO05D003109 5.0e-07 59.3 273 34.8
BcaB04g20321 Brassica carinata HOM05D004441 ORTHO05D003109 6.6e-07 58.9 279 34.4
CiPaw.03G171700 Carya illinoinensis HOM05D004441 ORTHO05D003109 6.6e-07 58.9 281 32.7
Glyma.12G108500 Glycine max HOM05D010177 ORTHO05D003109 8.6e-07 58.5 299 31.1
Lj3g0005406 Lotus japonicus HOM05D010177 ORTHO05D003109 8.6e-07 58.5 289 31.5
Lalb_Chr14g0366711 Lupinus albus HOM05D010177 ORTHO05D003109 8.6e-07 58.5 281 31.3
Lalb_Chr22g0356441 Lupinus albus HOM05D010177 ORTHO05D003109 1.1e-06 58.2 285 30.9
EL10Ac8g20284 Beta vulgaris HOM05D004441 ORTHO05D003109 1.5e-06 57.8 332 30.4
Cpa.g.sc27.93 Carica papaya HOM05D004441 ORTHO05D003109 1.5e-06 57.8 316 32.3
arahy.Tifrunner.gnm1.ann1.48X98F Arachis hypogaea HOM05D010177 ORTHO05D003109 1.9e-06 57.4 283 32.2
Rhsim04G0066200 Rhododendron simsii HOM05D009304 ORTHO05D003109 3.3e-06 56.6 344 29.1
Lj3g0011122 Lotus japonicus HOM05D010177 ORTHO05D003109 7.3e-06 55.5 326 31.6


User provided reference genes

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