Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 3.5e-77 291.6 151 100.0
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 1.5e-56 223.0 190 65.3
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 8.4e-55 217.2 190 63.7
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 2.7e-53 212.2 171 65.5
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 7.9e-53 210.7 140 72.9
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 3.9e-52 208.4 171 66.1
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.1e-50 202.6 140 68.6
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 2.8e-50 202.2 170 64.1
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 2.8e-50 202.2 190 58.4
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 4.8e-50 201.4 140 68.6
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 6.2e-50 201.1 190 57.9
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 6.2e-50 201.1 189 57.7
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 6.2e-50 201.1 190 59.5
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 6.2e-50 201.1 190 59.5
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 6.2e-50 201.1 190 59.5
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 8.1e-50 200.7 171 62.0
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 1.8e-49 199.5 186 59.1
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 1.8e-49 199.5 171 62.6
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 3.1e-49 198.7 173 60.1
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 4.0e-49 198.4 186 58.6
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 4.0e-49 198.4 187 59.9
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 4.0e-49 198.4 170 61.8
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 5.3e-49 198.0 189 56.1
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 5.3e-49 198.0 171 59.6
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 5.3e-49 198.0 172 58.1
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 9.0e-49 197.2 189 57.1
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 9.0e-49 197.2 188 56.4
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 9.0e-49 197.2 171 60.8
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 1.2e-48 196.8 189 56.6
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.0e-48 196.1 187 58.3
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.0e-48 196.1 187 58.3
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 2.6e-48 195.7 171 58.5
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.6e-48 195.7 187 58.3
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 2.6e-48 195.7 188 55.9
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 3.4e-48 195.3 189 56.1
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 4.5e-48 194.9 191 57.1
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 4.5e-48 194.9 189 56.6
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 4.5e-48 194.9 190 56.8
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 7.6e-48 194.1 171 60.2
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 7.6e-48 194.1 171 60.2
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 7.6e-48 194.1 190 55.3
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 7.6e-48 194.1 190 55.8
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 1.0e-47 193.7 183 57.9
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 1.7e-47 193.0 171 60.8
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 2.9e-47 192.2 186 57.0
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 2.9e-47 192.2 171 58.5
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 3.8e-47 191.8 164 62.8
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 4.9e-47 191.4 189 54.5
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 6.5e-47 191.0 188 55.9
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 6.5e-47 191.0 165 60.0
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 8.4e-47 190.7 188 55.3
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 8.4e-47 190.7 129 74.4
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 8.4e-47 190.7 170 58.8
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 1.4e-46 189.9 172 59.3
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 1.4e-46 189.9 184 57.6
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 2.5e-46 189.1 191 55.5
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 3.2e-46 188.7 191 55.5
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 3.2e-46 188.7 171 57.9
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 4.2e-46 188.3 175 57.1
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 5.5e-46 188.0 191 55.0
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 5.5e-46 188.0 190 55.3
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 7.1e-46 187.6 186 55.4
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 1.2e-45 186.8 191 55.0
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 1.2e-45 186.8 179 55.3
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 1.2e-45 186.8 189 54.5
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 1.2e-45 186.8 190 55.8
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 1.6e-45 186.4 187 57.8
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 1.6e-45 186.4 187 55.6
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 2.1e-45 186.0 191 54.5
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 2.1e-45 186.0 191 54.5
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 2.1e-45 186.0 196 54.1
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.1e-45 186.0 196 54.1
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 2.7e-45 185.7 190 53.7
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 3.5e-45 185.3 191 54.5
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 3.5e-45 185.3 191 54.5
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 4.6e-45 184.9 193 54.9
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 4.6e-45 184.9 191 54.5
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 4.6e-45 184.9 189 53.4
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 6.0e-45 184.5 171 56.7
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 6.7e-44 181.0 94 91.5
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.1e-43 180.3 169 58.6
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 5.7e-43 177.9 184 56.0
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 1.3e-42 176.8 169 56.2
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 1.3e-42 176.8 191 53.4
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 1.6e-42 176.4 171 54.4
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 2.1e-42 176.0 165 55.8
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 2.1e-42 176.0 168 55.4
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 2.8e-42 175.6 187 52.9
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 8.2e-42 174.1 170 54.7
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 1.8e-41 172.9 170 57.1
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 1.8e-41 172.9 168 53.0
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.8e-41 172.9 174 52.3
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 1.8e-41 172.9 172 54.1
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 2.4e-41 172.6 167 56.9
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 2.4e-41 172.6 188 52.7
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 2.4e-41 172.6 158 60.1
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 2.4e-41 172.6 171 53.2
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 5.3e-41 171.4 185 51.9
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 6.9e-41 171.0 169 53.8
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 2.0e-40 169.5 172 52.9
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 2.0e-40 169.5 183 51.9
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 2.6e-40 169.1 183 51.4
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 3.4e-40 168.7 172 52.9
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 5.9e-40 167.9 182 53.3
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 1.3e-39 166.8 189 52.9
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 1.7e-39 166.4 165 53.9
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 2.2e-39 166.0 168 51.8
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 2.9e-39 165.6 168 53.0
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 3.8e-39 165.2 172 51.2
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 5.0e-39 164.9 165 53.9
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 6.5e-39 164.5 165 53.9
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 6.5e-39 164.5 167 53.9
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 8.5e-39 164.1 164 57.9
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 1.4e-38 163.3 164 53.0
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 1.4e-38 163.3 168 51.8
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.9e-38 162.9 160 53.8
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 3.2e-38 162.2 173 56.6
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 3.2e-38 162.2 165 54.5
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 5.5e-38 161.4 94 77.7
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 5.5e-38 161.4 171 50.9
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 5.5e-38 161.4 165 53.3
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 5.5e-38 161.4 165 53.3
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 7.2e-38 161.0 165 53.9
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 9.3e-38 160.6 173 50.9
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 1.6e-37 159.8 168 51.8
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 1.6e-37 159.8 176 51.7
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 2.1e-37 159.5 172 50.0
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 2.7e-37 159.1 169 51.5
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 2.7e-37 159.1 180 50.6
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 6.1e-37 157.9 168 53.6
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 1.8e-36 156.4 164 52.4
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 2.3e-36 156.0 164 53.0
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 5.1e-36 154.8 168 50.0
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 8.7e-36 154.1 173 49.7
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.1e-35 153.7 163 51.5
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 1.5e-35 153.3 189 48.7
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 5.7e-35 151.4 94 73.4
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 2.2e-34 149.4 92 72.8
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 6.9e-33 144.4 163 48.5
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 2.6e-32 142.5 96 69.8
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.5e-32 141.7 168 48.8
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.9e-31 139.0 157 47.1
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 6.5e-31 137.9 173 45.7
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 8.5e-31 137.5 160 47.5
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 8.5e-31 137.5 168 48.2
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 8.5e-31 137.5 168 48.2
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.4e-30 136.7 168 47.6
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 1.4e-30 136.7 159 46.5
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 4.2e-30 135.2 166 50.6
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 2.7e-29 132.5 163 46.0
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 6.1e-29 131.3 136 55.1
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 7.9e-29 131.0 151 50.3
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 1.4e-28 130.2 165 44.8
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.8e-28 129.8 182 44.0
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 6.7e-28 127.9 150 50.7
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.5e-24 116.7 190 40.0
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 2.0e-24 116.3 160 43.8
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 5.9e-24 114.8 135 50.4
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 2.2e-23 112.8 157 45.9
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 5.0e-23 111.7 169 38.5
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 2.1e-21 106.3 142 41.5
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 2.1e-21 106.3 74 70.3
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.8e-20 103.2 174 37.4
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 2.2e-18 96.3 127 47.2
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 3.7e-18 95.5 127 44.9
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 6.3e-18 94.7 133 45.1
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 5.3e-17 91.7 83 57.8
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 7.0e-17 91.3 129 42.6
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.5e-14 82.8 150 32.7
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 2.1e-13 79.7 50 72.0
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-12 77.0 108 49.1
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 3.3e-11 72.4 36 86.1
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.8e-10 68.6 36 80.6
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 6.5e-07 58.2 39 66.7
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.5e-06 57.0 97 40.2
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.9e-06 56.6 59 57.6


User provided reference genes

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