Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow8G1257 Salvia bowleyana HOM05D004337 ORTHO05D005422 2.9e-113 412.1 249 100.0
SalBow8G3722 Salvia bowleyana HOM05D004337 ORTHO05D005422 2.9e-113 412.1 249 100.0
SGA_v2.0_scaffold12G06278 Striga asiatica HOM05D004337 ORTHO05D005422 1.2e-87 327.0 218 72.5
MSTRG.23236 Avicennia marina HOM05D004337 ORTHO05D005422 4.7e-87 325.1 214 74.3
SGA_v2.0_scaffold51G18842 Striga asiatica HOM05D004337 ORTHO05D005422 2.2e-84 316.2 243 71.2
Migut.H02542 Erythranthe guttata HOM05D004337 ORTHO05D005422 1.4e-83 313.5 241 66.0
Oeu054207.1 Olea europaea HOM05D004337 ORTHO05D005422 1.6e-82 310.1 219 68.5
Sabra04G0083600 Salix brachista HOM05D004337 ORTHO05D005422 1.3e-81 307.0 226 64.2
CiPaw.15G184900 Carya illinoinensis HOM05D004337 ORTHO05D005422 8.6e-81 304.3 236 64.8
Nitab4.5_0000496g0240 Nicotiana tabacum HOM05D004337 ORTHO05D005422 1.9e-80 303.1 246 65.0
Potri.T045800 Populus trichocarpa HOM05D004337 ORTHO05D005422 7.3e-80 301.2 224 64.3
Rhsim10G0124700 Rhododendron simsii HOM05D004337 ORTHO05D005422 7.3e-80 301.2 222 67.1
Hma1.2p1_0296F.1_g116900 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 2.1e-79 299.7 210 69.0
Potri.018G137500 Populus trichocarpa HOM05D004337 ORTHO05D005422 2.1e-79 299.7 224 63.8
Dinv09624 Davidia involucrata HOM05D004337 ORTHO05D005422 8.1e-79 297.7 212 68.9
Oeu017633.3 Olea europaea HOM05D004337 ORTHO05D005422 8.1e-79 297.7 220 65.5
Duzib264G1201 Durio zibethinus HOM05D004337 ORTHO05D005422 1.8e-78 296.6 212 67.9
Potri.004G134500 Populus trichocarpa HOM05D004337 ORTHO05D005422 1.8e-78 296.6 224 62.9
TAR376G0777 Trochodendron aralioides HOM05D004337 ORTHO05D005422 1.8e-78 296.6 215 67.4
Peaxi162Scf00353g00735 Petunia axillaris HOM05D004337 ORTHO05D005422 3.1e-78 295.8 223 63.2
Ciclev10025224m.g Citrus clementina HOM05D004337 ORTHO05D005422 4.4e-77 292.0 225 63.1
Nitab4.5_0004764g0030 Nicotiana tabacum HOM05D004337 ORTHO05D005422 7.6e-77 291.2 248 64.1
Cfa020919 Carpinus fangiana HOM05D004337 ORTHO05D005422 9.9e-77 290.8 237 61.6
Actinidia36582 Actinidia chinensis HOM05D004337 ORTHO05D005422 1.7e-76 290.0 219 65.8
Gohir.A05G375100 Gossypium hirsutum HOM05D004337 ORTHO05D005422 1.7e-76 290.0 212 66.5
Gohir.D04G040600 Gossypium hirsutum HOM05D004337 ORTHO05D005422 1.7e-76 290.0 212 66.5
Gorai.012G045800 Gossypium raimondii HOM05D004337 ORTHO05D005422 1.7e-76 290.0 212 66.5
Lsat_1_v5_gn_2_40441 Lactuca sativa HOM05D004337 ORTHO05D005422 2.2e-76 289.7 240 65.8
Lj4A821G42 Lonicera japonica HOM05D004337 ORTHO05D005422 2.2e-76 289.7 239 65.3
unitig_736.g22365 Utricularia gibba HOM05D004337 ORTHO05D005422 2.2e-76 289.7 219 65.3
Aqoxy5G01850 Aquilegia oxysepala HOM05D004337 ORTHO05D005422 2.9e-76 289.3 215 66.0
Gohir.D12G002000 Gossypium hirsutum HOM05D004337 ORTHO05D005422 4.9e-76 288.5 220 64.5
arahy.Tifrunner.gnm1.ann1.X1BSDH Arachis hypogaea HOM05D004337 ORTHO05D005422 6.4e-76 288.1 207 67.1
Sopen05g034740 Solanum pennellii HOM05D004337 ORTHO05D005422 6.4e-76 288.1 251 58.2
Nn5g27210 Nelumbo nucifera HOM05D004337 ORTHO05D005422 8.4e-76 287.7 214 65.0
MBI06_g32147_MAGBIO Magnolia biondii HOM05D004337 ORTHO05D005422 1.1e-75 287.3 209 65.6
MD15G1140200 Malus domestica HOM05D004337 ORTHO05D005422 1.1e-75 287.3 212 64.2
Gohir.A12G002300 Gossypium hirsutum HOM05D004337 ORTHO05D005422 1.9e-75 286.6 220 64.5
Oeu046358.1 Olea europaea HOM05D004337 ORTHO05D005422 1.9e-75 286.6 214 65.4
QL10p037473 Quercus lobata HOM05D004337 ORTHO05D005422 2.4e-75 286.2 215 65.6
CAN.G1156.26 Capsicum annuum HOM05D004337 ORTHO05D005422 3.2e-75 285.8 224 62.5
Solyc05g056350.3 Solanum lycopersicum HOM05D004337 ORTHO05D005422 4.1e-75 285.4 251 57.4
Atru.chr3.1466 Acer truncatum HOM05D004337 ORTHO05D005422 7.1e-75 284.6 215 65.1
GSVIVG01000243001 Vitis vinifera HOM05D004337 ORTHO05D005422 7.1e-75 284.6 234 62.4
Cpa.g.sc138.38 Carica papaya HOM05D004337 ORTHO05D005422 9.2e-75 284.3 224 62.9
MELO3C003282.2 Cucumis melo HOM05D004337 ORTHO05D005422 9.2e-75 284.3 214 64.5
PGSC0003DMG400023451 Solanum tuberosum HOM05D004337 ORTHO05D005422 3.5e-74 282.3 258 56.6
Thecc.01G146600 Theobroma cacao HOM05D004337 ORTHO05D005422 3.5e-74 282.3 220 64.1
Gorai.008G001400 Gossypium raimondii HOM05D004337 ORTHO05D005422 4.6e-74 282.0 227 63.0
arahy.Tifrunner.gnm1.ann1.397MFZ Arachis hypogaea HOM05D004337 ORTHO05D005422 7.8e-74 281.2 214 64.5
Aa31LG3G18040 Aethionema arabicum HOM05D004337 ORTHO05D005422 1.3e-73 280.4 214 62.6
TWI75G1462 Tripterygium wilfordii HOM05D004337 ORTHO05D005422 1.7e-73 280.0 214 62.6
Ca_17042_v3 Cicer arietinum L. HOM05D004337 ORTHO05D005422 3.0e-73 279.3 236 66.5
Manes.12G081000 Manihot esculenta HOM05D004337 ORTHO05D005422 3.9e-73 278.9 212 62.3
Thhalv10013045m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 5.1e-73 278.5 230 60.0
Prupe.4G286100 Prunus persica HOM05D004337 ORTHO05D005422 5.1e-73 278.5 226 62.4
Sc16g0009860 Simmondsia chinensis HOM05D004337 ORTHO05D005422 5.1e-73 278.5 236 63.1
AL6G19170 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.1e-72 277.3 242 56.2
Actinidia19947 Actinidia chinensis HOM05D004337 ORTHO05D005422 1.9e-72 276.6 212 67.0
C09p68510 Brassica napus HOM05D004337 ORTHO05D005422 1.9e-72 276.6 257 56.8
CsaV3_4G030000 Cucumis sativus L. HOM05D004337 ORTHO05D005422 1.9e-72 276.6 212 63.2
TPR.G7800 Trifolium pratense HOM05D004337 ORTHO05D005422 1.9e-72 276.6 234 56.4
AL6G18970 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.5e-72 276.2 242 55.8
CARHR189960 Cardamine hirsuta HOM05D004337 ORTHO05D005422 2.5e-72 276.2 220 59.5
PGR119G0424 Punica granatum HOM05D004337 ORTHO05D005422 3.3e-72 275.8 214 62.6
Thhalv10003872m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 4.3e-72 275.4 218 60.1
Hund21761 Selenicereus undatus HOM05D004337 ORTHO05D005422 4.3e-72 275.4 214 61.7
THA.LOC104818397 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 7.3e-72 274.6 215 64.7
Aa31LG11G2980 Aethionema arabicum HOM05D004337 ORTHO05D005422 1.2e-71 273.9 215 59.5
EL10Ac4g09743 Beta vulgaris HOM05D004337 ORTHO05D005422 1.2e-71 273.9 236 57.6
BcaB08g37252 Brassica carinata HOM05D004337 ORTHO05D005422 1.2e-71 273.9 233 59.7
BraA09t36334Z Brassica rapa HOM05D004337 ORTHO05D005422 1.2e-71 273.9 251 53.8
ECA238G0122 Erigeron canadensis HOM05D004337 ORTHO05D005422 1.2e-71 273.9 241 57.3
THA.LOC104819366 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 1.2e-71 273.9 212 64.2
BolC9t59595H Brassica oleracea HOM05D004337 ORTHO05D005422 1.6e-71 273.5 258 56.2
AUR62006971 Chenopodium quinoa HOM05D004337 ORTHO05D005422 3.6e-71 272.3 236 61.0
Psat5g057120 Pisum sativum HOM05D004337 ORTHO05D005422 3.6e-71 272.3 214 62.6
RcHm_v2.0_Chr3g0484771 Rosa chinensis HOM05D004337 ORTHO05D005422 3.6e-71 272.3 214 60.3
Sp2g23620 Schrenkiella parvula HOM05D004337 ORTHO05D005422 3.6e-71 272.3 218 59.6
BcaB04g19858 Brassica carinata HOM05D004337 ORTHO05D005422 4.7e-71 271.9 220 59.1
Lalb_Chr07g0183961 Lupinus albus HOM05D004337 ORTHO05D005422 4.7e-71 271.9 240 57.1
Sed0025757 Sechium edule HOM05D004337 ORTHO05D005422 4.7e-71 271.9 212 61.8
BraA06t26382Z Brassica rapa HOM05D004337 ORTHO05D005422 6.2e-71 271.6 218 59.6
BolC7t44925H Brassica oleracea HOM05D004337 ORTHO05D005422 8.1e-71 271.2 218 59.6
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 1.1e-70 270.8 218 59.6
BraA10t44874Z Brassica rapa HOM05D004337 ORTHO05D005422 1.1e-70 270.8 231 58.4
Carub.0006s2135 Capsella rubella HOM05D004337 ORTHO05D005422 1.1e-70 270.8 229 56.3
CARHR204490 Cardamine hirsuta HOM05D004337 ORTHO05D005422 1.1e-70 270.8 221 60.2
AUR62000615 Chenopodium quinoa HOM05D004337 ORTHO05D005422 1.1e-70 270.8 238 60.1
vmacro12739 Vaccinium macrocarpon HOM05D004337 ORTHO05D005422 1.1e-70 270.8 328 48.5
BcaC04g23504 Brassica carinata HOM05D004337 ORTHO05D005422 1.4e-70 270.4 218 58.7
C09p07600 Brassica napus HOM05D004337 ORTHO05D005422 1.4e-70 270.4 220 58.6
BolC9t53677H Brassica oleracea HOM05D004337 ORTHO05D005422 1.4e-70 270.4 218 58.7
Carub.0006s0742 Capsella rubella HOM05D004337 ORTHO05D005422 1.4e-70 270.4 218 60.1
C07p43970 Brassica napus HOM05D004337 ORTHO05D005422 1.8e-70 270.0 218 59.2
Glyma.04G203800 Glycine max HOM05D004337 ORTHO05D005422 3.1e-70 269.2 215 63.3
A10p28250 Brassica napus HOM05D004337 ORTHO05D005422 4.0e-70 268.9 231 58.0
Lalb_Chr12g0202711 Lupinus albus HOM05D004337 ORTHO05D005422 5.2e-70 268.5 240 56.7
A09p06870 Brassica napus HOM05D004337 ORTHO05D005422 6.9e-70 268.1 229 56.3
Eucgr.I00018 Eucalyptus grandis HOM05D004337 ORTHO05D005422 6.9e-70 268.1 210 62.9
Lj1g0000957 Lotus japonicus HOM05D004337 ORTHO05D005422 6.9e-70 268.1 207 63.3
VMungo1309G0234 Vigna mungo HOM05D004337 ORTHO05D005422 6.9e-70 268.1 216 63.0
DCAR_009619 Daucus carota HOM05D004337 ORTHO05D005422 9.0e-70 267.7 217 61.3
FvH4_1g25770 Fragaria vesca HOM05D004337 ORTHO05D005422 9.0e-70 267.7 237 55.7
ATR1089G072 Amborella trichopoda HOM05D004337 ORTHO05D005422 1.2e-69 267.3 213 63.4
Phvul.009G159800 Phaseolus vulgaris HOM05D004337 ORTHO05D005422 1.2e-69 267.3 217 65.4
CANSAT54G2432 Cannabis sativa HOM05D004337 ORTHO05D005422 2.0e-69 266.5 231 58.0
Glyma.06G161400 Glycine max HOM05D004337 ORTHO05D005422 2.0e-69 266.5 222 66.7
AT5G23575 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 5.8e-69 265.0 229 55.5
Haze_19352 Corylus avellana HOM05D004337 ORTHO05D005422 5.8e-69 265.0 203 64.5
HPP92_009218 Vanilla planifolia HOM05D004337 ORTHO05D005422 7.6e-69 264.6 213 63.8
AL6G34865 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.7e-68 263.5 229 55.0
FAN26G1467 Fragaria x ananassa HOM05D004337 ORTHO05D005422 2.2e-68 263.1 254 53.1
Os04g0441900 Oryza sativa ssp. japonica HOM05D004337 ORTHO05D005422 2.9e-68 262.7 212 59.0
PSO210G2848 Papaver somniferum HOM05D004337 ORTHO05D005422 2.9e-68 262.7 215 59.1
PSO761G0180 Papaver somniferum HOM05D004337 ORTHO05D005422 2.9e-68 262.7 215 59.1
FAN28G1720 Fragaria x ananassa HOM05D004337 ORTHO05D005422 3.8e-68 262.3 254 53.1
Zm00001eb082160 Zea mays HOM05D004337 ORTHO05D005422 3.8e-68 262.3 214 57.9
FAN23G1824 Fragaria x ananassa HOM05D004337 ORTHO05D005422 6.4e-68 261.5 254 53.1
COL.COLO4_33529 Corchorus olitorius HOM05D004337 ORTHO05D005422 1.1e-67 260.8 207 62.3
FAN19G0301 Fragaria x ananassa HOM05D004337 ORTHO05D005422 3.2e-67 259.2 254 52.8
Medtr3g098210 Medicago truncatula HOM05D004337 ORTHO05D005422 9.3e-67 257.7 217 59.0
Cc00_g00810 Coffea canephora HOM05D004337 ORTHO05D005422 1.0e-65 254.2 159 75.5
Zm00001eb422980 Zea mays HOM05D004337 ORTHO05D005422 1.3e-65 253.8 211 56.4
CDE05G2996 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 2.3e-65 253.1 236 52.1
HanXRQChr10g0285831 Helianthus annuus HOM05D004337 ORTHO05D005422 2.4e-62 243.0 187 62.0
ClCG04G002680 Citrullus lanatus HOM05D004337 ORTHO05D005422 3.1e-62 242.7 157 72.0
Peaxi162Scf00651g00114 Petunia axillaris HOM05D004337 ORTHO05D005422 9.9e-61 237.7 188 63.3
AT5G08500 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 1.8e-54 216.9 168 61.9
Dinv10851 Davidia involucrata HOM05D004337 ORTHO05D005422 5.8e-53 211.8 153 66.7
SMO116G0204 Selaginella moellendorffii HOM05D004337 ORTHO05D005422 3.8e-52 209.1 205 49.3
Mapoly0020s0073 Marchantia polymorpha HOM05D004337 ORTHO05D005422 1.4e-51 207.2 214 48.1
Sp6g34400 Schrenkiella parvula HOM05D004337 ORTHO05D005422 9.3e-51 204.5 233 48.5
CBR_g44530 Chara braunii HOM05D004337 ORTHO05D005422 2.4e-46 189.9 224 51.3
CSS0021638 Camellia sinensis var. sinensis HOM05D004337 ORTHO05D005422 3.8e-44 182.6 137 79.6
Pp3c5_10010 Physcomitrium patens HOM05D004337 ORTHO05D005422 1.7e-36 157.1 223 39.5
Ah.06g188230 Amaranthus hybridus HOM05D004337 ORTHO05D005422 1.4e-35 154.1 232 42.7
BcaC04g21668 Brassica carinata HOM05D004337 ORTHO05D021976 9.7e-24 114.8 73 71.2
Psat3g077400 Pisum sativum HOM05D004337 ORTHO05D005422 9.7e-24 114.8 118 56.8
C09p29160 Brassica napus HOM05D004337 ORTHO05D021976 1.7e-23 114.0 69 73.9
Cre09.g397900 Chlamydomonas reinhardtii HOM05D004337 ORTHO05D005422 7.7e-21 105.1 231 29.9
AUR62044487 Chenopodium quinoa HOM05D004337 ORTHO05D021976 3.5e-13 79.7 70 57.1
AUR62044516 Chenopodium quinoa HOM05D004337 ORTHO05D021976 3.5e-13 79.7 70 57.1
AUR62038356 Chenopodium quinoa HOM05D001477 ORTHO05D021976 1.5e-11 74.3 43 76.7
AL6G18990 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 7.2e-11 72.0 81 45.7
AL6G19020 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 7.2e-11 72.0 81 45.7
SHI11402 Sapria himalayana HOM05D000039 ORTHO05D006865 3.0e-09 66.6 48 62.5
CDE05G0837 Ceratophyllum demersum HOM05D004337 ORTHO05D043897 7.0e-06 55.5 50 50.0
Cc00_g00820 Coffea canephora HOM05D004337 ORTHO05D005422 9.1e-06 55.1 26 92.3


User provided reference genes

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