Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow8G3417 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 3568.1 1806 100.0
SalBow8G2487 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 3216.0 1846 89.8
Migut.M01591 Erythranthe guttata HOM05D004535 ORTHO05D005341 0.0e+00 3042.3 1845 84.0
MSTRG.15824 Avicennia marina HOM05D004535 ORTHO05D005341 0.0e+00 2932.9 1845 80.5
Oeu013013.2 Olea europaea HOM05D004535 ORTHO05D005341 0.0e+00 2709.5 1920 73.2
Dinv19653 Davidia involucrata HOM05D004535 ORTHO05D005341 0.0e+00 2680.2 1850 74.0
Solyc07g066030.4 Solanum lycopersicum HOM05D004535 ORTHO05D005341 0.0e+00 2671.3 1844 73.2
Sopen07g034220 Solanum pennellii HOM05D004535 ORTHO05D005341 0.0e+00 2669.8 1844 73.1
Cc05_g15580 Coffea canephora HOM05D004535 ORTHO05D005341 0.0e+00 2658.2 1851 72.6
GSVIVG01014769001 Vitis vinifera HOM05D004535 ORTHO05D005341 0.0e+00 2655.2 1843 73.4
Lj1C898T24 Lonicera japonica HOM05D004535 ORTHO05D005341 0.0e+00 2647.5 1863 72.5
CSS0018371 Camellia sinensis var. sinensis HOM05D004535 ORTHO05D005341 0.0e+00 2628.6 1846 72.9
Rhsim04G0008600 Rhododendron simsii HOM05D004535 ORTHO05D005341 0.0e+00 2625.5 1846 72.4
Hma1.2p1_0193F.1_g084240 Hydrangea macrophylla HOM05D004535 ORTHO05D005341 0.0e+00 2624.0 1844 72.3
Atru.chr2.3782 Acer truncatum HOM05D004535 ORTHO05D005341 0.0e+00 2622.4 1848 71.7
CiPaw.11G209600 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 2617.8 1847 72.0
Manes.01G005500 Manihot esculenta HOM05D004535 ORTHO05D005341 0.0e+00 2612.8 1844 71.1
Prupe.6G032900 Prunus persica HOM05D004535 ORTHO05D005341 0.0e+00 2583.1 1845 70.8
vmacro09603 Vaccinium macrocarpon HOM05D004535 ORTHO05D005341 0.0e+00 2583.1 1954 68.5
Nitab4.5_0001303g0050 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 2580.1 1829 71.6
CANSAT11G1644 Cannabis sativa HOM05D004535 ORTHO05D005341 0.0e+00 2576.6 1849 71.0
Potri.001G470600 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 2574.3 1846 70.2
Ciclev10007234m.g Citrus clementina HOM05D004535 ORTHO05D005341 0.0e+00 2568.1 1852 70.2
MD11G1042000 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2565.0 1845 70.4
TAR627G0331 Trochodendron aralioides HOM05D004535 ORTHO05D005341 0.0e+00 2563.1 1844 70.1
Thecc.07G003100 Theobroma cacao HOM05D004535 ORTHO05D005341 0.0e+00 2557.7 1793 72.4
MD03G1040600 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2554.6 1842 70.1
Gorai.009G454100 Gossypium raimondii HOM05D004535 ORTHO05D005341 0.0e+00 2554.2 1832 70.9
FAN11G1653 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2553.5 1850 69.9
FAN16G2454 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2552.7 1850 69.9
FAN21G2952 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2552.3 1850 70.0
RcHm_v2.0_Chr5g0075021 Rosa chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2552.3 1850 69.6
FAN25G2892 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2550.4 1850 69.9
HanXRQChr03g0079281 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 2536.9 1846 69.5
TWI38G2299 Tripterygium wilfordii HOM05D004535 ORTHO05D005341 0.0e+00 2532.3 1847 70.1
QL08p000781 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 2528.1 1800 72.0
ECA240G2049 Erigeron canadensis HOM05D004535 ORTHO05D005341 0.0e+00 2512.6 1845 68.9
Peaxi162Scf00232g00530 Petunia axillaris HOM05D004535 ORTHO05D005341 0.0e+00 2506.5 1861 69.6
PGR083G0052 Punica granatum HOM05D004535 ORTHO05D005341 0.0e+00 2499.9 1843 68.8
Aqoxy4G02281 Aquilegia oxysepala HOM05D004535 ORTHO05D005341 0.0e+00 2493.4 1845 67.9
Gohir.D05G387450 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 2489.9 1832 69.6
Psat5g164120 Pisum sativum HOM05D004535 ORTHO05D005341 0.0e+00 2486.1 1849 67.9
Medtr3g461520 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 2484.5 1848 67.9
Sabra11G0138700 Salix brachista HOM05D004535 ORTHO05D005341 0.0e+00 2484.5 2001 64.3
Glyma.18G071500 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 2482.6 1848 67.9
Eucgr.F02001 Eucalyptus grandis HOM05D004535 ORTHO05D005341 0.0e+00 2479.9 1847 68.0
Haze_09903 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 2479.1 1884 68.5
Duzib213G0320 Durio zibethinus HOM05D004535 ORTHO05D005341 0.0e+00 2476.8 1847 69.3
Lj6g0015552 Lotus japonicus HOM05D004535 ORTHO05D005341 0.0e+00 2476.0 1848 67.5
Glyma.08G336400 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 2471.8 1849 67.5
Lalb_Chr20g0115261 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 2464.5 1847 67.4
Lalb_Chr18g0050431 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 2463.7 1847 67.3
Thhalv10019881m.g Eutrema salsugineum HOM05D004535 ORTHO05D005341 0.0e+00 2459.5 1843 67.7
Phvul.006G061700 Phaseolus vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 2457.6 1848 67.4
PSO210G5731 Papaver somniferum HOM05D004535 ORTHO05D005341 0.0e+00 2454.1 1844 66.7
TPR.G14720 Trifolium pratense HOM05D004535 ORTHO05D005341 0.0e+00 2453.3 1843 67.3
Carub.0003s1271 Capsella rubella HOM05D004535 ORTHO05D005341 0.0e+00 2452.6 1844 67.2
THA.LOC104822705 Tarenaya hassleriana HOM05D004535 ORTHO05D005341 0.0e+00 2447.9 1845 67.2
FvH4_3g41830 Fragaria vesca HOM05D004535 ORTHO05D005341 0.0e+00 2444.5 1787 69.3
AL3G25150 Arabidopsis lyrata HOM05D004535 ORTHO05D005341 0.0e+00 2441.0 1847 67.1
Lsat_1_v5_gn_9_89621 Lactuca sativa HOM05D004535 ORTHO05D005341 0.0e+00 2440.6 1840 68.0
BcaB04g18753 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 2440.2 1844 67.1
Sed0018073 Sechium edule HOM05D004535 ORTHO05D005341 0.0e+00 2438.7 1844 66.9
HanXRQChr13g0409231 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 2432.1 1843 67.4
Sc20g0000040 Simmondsia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2428.7 1846 66.7
Aa31LG8G550 Aethionema arabicum HOM05D004535 ORTHO05D005341 0.0e+00 2427.9 1846 66.9
AT3G13330 Arabidopsis thaliana HOM05D004535 ORTHO05D005341 0.0e+00 2425.6 1847 67.0
BcaC01g03999 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 2425.2 1844 66.7
BraA03t12967Z Brassica rapa HOM05D004535 ORTHO05D005341 0.0e+00 2425.2 1844 66.6
BolC3t16899H Brassica oleracea HOM05D004535 ORTHO05D005341 0.0e+00 2424.0 1845 66.7
A03p38140 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 2421.7 1844 66.5
C03p46300 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 2421.4 1844 66.7
CARHR087940 Cardamine hirsuta HOM05D004535 ORTHO05D005341 0.0e+00 2419.0 1846 66.8
ClCG10G004180 Citrullus lanatus HOM05D004535 ORTHO05D005341 0.0e+00 2416.7 1861 66.5
Sp3g11530 Schrenkiella parvula HOM05D004535 ORTHO05D005341 0.0e+00 2416.7 1844 66.1
MELO3C014086.2 Cucumis melo HOM05D004535 ORTHO05D005341 0.0e+00 2416.0 1847 66.5
arahy.Tifrunner.gnm1.ann1.DDNH16 Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 2405.6 1929 64.5
CsaV3_3G003990 Cucumis sativus L. HOM05D004535 ORTHO05D005341 0.0e+00 2396.7 1847 66.2
AUR62035634 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 2390.1 1848 66.3
EL10Ac4g07499 Beta vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 2389.0 1840 65.9
AUR62017172 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 2382.8 1860 65.5
VMungo0540G2510 Vigna mungo HOM05D004535 ORTHO05D005341 0.0e+00 2379.7 1791 67.7
Gohir.A04G001901 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 2378.2 1679 72.2
MBI15_g37116_MAGBIO Magnolia biondii HOM05D004535 ORTHO05D005341 0.0e+00 2368.2 1795 66.6
DCAR_013765 Daucus carota HOM05D004535 ORTHO05D005341 0.0e+00 2347.0 1841 65.7
Nitab4.5_0000152g0130 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 2340.5 1654 72.2
Hund22978 Selenicereus undatus HOM05D004535 ORTHO05D005341 0.0e+00 2310.4 1845 64.5
QL08p000755 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 2277.3 1973 60.7
Medtr3g461500 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 2266.9 1883 62.6
Ah.06g180940 Amaranthus hybridus HOM05D004535 ORTHO05D005341 0.0e+00 2252.6 1867 62.3
Nn1g08312 Nelumbo nucifera HOM05D004535 ORTHO05D005341 0.0e+00 2230.3 1630 69.4
HPP92_018915 Vanilla planifolia HOM05D004535 ORTHO05D005341 0.0e+00 2223.4 1855 61.6
Actinidia03667 Actinidia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2222.6 1567 73.4
ATR0751G071 Amborella trichopoda HOM05D004535 ORTHO05D005341 0.0e+00 2221.8 1847 61.3
Haze_09904 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 2202.9 1932 60.8
Zm00001eb281130 Zea mays HOM05D004535 ORTHO05D005341 0.0e+00 2050.4 1843 57.0
arahy.Tifrunner.gnm1.ann1.HJC4WF Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 2039.2 1467 69.7
CiPaw.12G142100 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 2031.1 1709 62.0
Ca_14867_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 0.0e+00 2028.8 1546 67.2
Cpa.g.sc12.80 Carica papaya HOM05D004535 ORTHO05D005341 0.0e+00 2004.9 1739 61.9
unitig_699.g19598 Utricularia gibba HOM05D004535 ORTHO05D005341 0.0e+00 1859.0 1841 55.6
CDE05G3236 Ceratophyllum demersum HOM05D004535 ORTHO05D005341 0.0e+00 1724.9 1456 61.1
Potri.011G167700 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 1708.7 1175 71.7
MD00G1206400 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 1661.7 1257 67.6
PGSC0003DMG401022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 0.0e+00 1467.6 972 74.2
AagrBONN_evm.TU.Sc2ySwM_228.5886 Anthoceros agrestis HOM05D004535 ORTHO05D005341 0.0e+00 1357.8 1885 41.5
Mapoly0071s0029 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1335.9 1953 40.5
Pp3c20_11540 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1327.4 1884 40.9
Mapoly0069s0005 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1301.2 1908 39.4
CAN.G623.63 Capsicum annuum HOM05D004535 ORTHO05D005341 0.0e+00 1196.4 862 71.9
Pp3c15_5520 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1162.9 1860 37.7
SMO184G0002 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1156.4 1845 37.9
SMO340G0109 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1104.0 1841 36.7
CAN.G623.64 Capsicum annuum HOM05D004535 ORTHO05D005341 0.0e+00 1085.5 976 60.2
SMO239G0001 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 1.8e-292 1010.4 1855 35.1
Ca_14861_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 4.4e-283 979.2 742 66.6
CBR_g24134 Chara braunii HOM05D004535 ORTHO05D005341 4.4e-267 926.0 1998 32.4
Os06g0301300 Oryza sativa ssp. japonica HOM05D004535 ORTHO05D005341 1.5e-238 831.2 719 57.7
COL.COLO4_07778 Corchorus olitorius HOM05D004535 ORTHO05D005341 1.3e-234 818.1 1130 46.1
Potri.011G167650 Populus trichocarpa HOM05D004535 ORTHO05D005341 3.1e-172 610.9 504 63.1
Actinidia00829 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.7e-162 578.6 593 57.5
SEGI_13123 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 5.2e-135 487.3 460 52.4
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 1.4e-127 462.6 642 45.8
MCO11G531 Micromonas commoda HOM05D004535 ORTHO05D005341 2.2e-117 428.7 1935 25.2
VMungo0540G1109 Vigna mungo HOM05D004535 ORTHO05D005341 1.4e-108 399.4 307 62.9
Ca_14860_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 2.4e-108 398.7 339 61.9
Actinidia00827 Actinidia chinensis HOM05D004535 ORTHO05D005341 2.0e-102 379.0 325 62.2
SEGI_38328 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 3.4e-102 378.3 434 46.8
MD00G1206600 Malus domestica HOM05D004535 ORTHO05D005341 2.7e-99 368.6 244 70.9
MD00G1206500 Malus domestica HOM05D004535 ORTHO05D005341 1.2e-94 353.2 246 74.0
VMungo1127G2045 Vigna mungo HOM05D004535 ORTHO05D005341 1.9e-84 319.3 246 65.4
PRCOL_00006556 Prasinoderma coloniale HOM05D004535 ORTHO05D005341 1.2e-83 316.6 1931 22.7
Actinidia03668 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.5e-78 299.7 246 60.6
SEGI_32129 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 7.2e-76 290.8 361 50.1
Nn1g08306 Nelumbo nucifera HOM05D004535 ORTHO05D005341 8.2e-72 277.3 191 70.2
arahy.Tifrunner.gnm1.ann1.P6R29M Arachis hypogaea HOM05D004535 ORTHO05D005341 1.0e-66 260.4 349 46.4
SEGI_15666 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 3.6e-35 155.6 138 60.1
Cpa.g.sc12.82 Carica papaya HOM05D004535 ORTHO05D005341 4.0e-34 152.1 100 76.0
Actinidia00828 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.1e-31 144.1 210 43.8
Cre14.g628702 Chlamydomonas reinhardtii HOM05D004535 ORTHO05D005341 3.3e-28 132.5 670 23.4
Cfa027001 Carpinus fangiana HOM05D004535 ORTHO05D005341 8.9e-26 124.4 1771 20.1
arahy.Tifrunner.gnm1.ann1.A7P7U5 Arachis hypogaea HOM05D004535 ORTHO05D005341 4.9e-24 118.6 93 72.0
PSO541G1144 Papaver somniferum HOM05D004535 ORTHO05D005341 1.4e-23 117.1 74 71.6
arahy.Tifrunner.gnm1.ann1.6S2B7N Arachis hypogaea HOM05D012221 ORTHO05D005341 6.6e-21 108.2 119 55.5
PGSC0003DMG402022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 2.5e-20 106.3 98 56.1
Psat5g106440 Pisum sativum HOM05D004535 ORTHO05D005341 2.3e-18 99.8 63 79.4
arahy.Tifrunner.gnm1.ann1.EHT35G Arachis hypogaea HOM05D004535 ORTHO05D005341 2.0e-17 96.7 99 55.6
arahy.Tifrunner.gnm1.ann1.QBA8JR Arachis hypogaea HOM05D004535 ORTHO05D005341 5.8e-17 95.1 163 42.3
Ca_31034_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 2.2e-16 93.2 75 60.0
Lsat_1_v5_gn_0_5420 Lactuca sativa HOM05D004535 ORTHO05D005341 2.4e-15 89.7 73 57.5
VMungo1215G1327 Vigna mungo HOM05D004535 ORTHO05D005341 1.2e-14 87.4 63 73.0
SEGI_18126 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 4.6e-14 85.5 73 47.9
VMungo0110G0001 Vigna mungo HOM05D004535 ORTHO05D005341 4.0e-10 72.4 68 48.5
arahy.Tifrunner.gnm1.ann1.HQ6FCP Arachis hypogaea HOM05D004535 ORTHO05D005341 7.6e-09 68.2 170 36.5
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 4.1e-07 62.4 77 51.9
Psat4g112520 Pisum sativum HOM05D004535 ORTHO05D005341 4.1e-07 62.4 45 64.4


User provided reference genes

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