Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow8G3014 Salvia bowleyana HOM05D001231 ORTHO05D001012 1.1e-48 196.4 111 100.0
SalBow8G2299 Salvia bowleyana HOM05D001231 ORTHO05D001012 3.6e-47 191.4 113 98.2
SalBow7G0339 Salvia bowleyana HOM05D001231 ORTHO05D001012 5.4e-35 151.0 107 72.0
SalBow8G3771 Salvia bowleyana HOM05D001231 ORTHO05D001012 3.7e-23 111.7 72 77.8
SalBow8G2012 Salvia bowleyana HOM05D001231 ORTHO05D001012 9.0e-22 107.1 72 73.6
SalBow8G5419 Salvia bowleyana HOM05D001231 ORTHO05D001012 9.0e-22 107.1 72 73.6
Migut.M01514 Erythranthe guttata HOM05D001231 ORTHO05D001012 8.7e-17 90.5 75 64.0
SalBow1G2431 Salvia bowleyana HOM05D001231 ORTHO05D001012 4.5e-13 78.2 59 62.7
Migut.H01662 Erythranthe guttata HOM05D001231 ORTHO05D001012 1.7e-12 76.3 76 52.6
SGA_v2.0_scaffold49G18198 Striga asiatica HOM05D001231 ORTHO05D001012 8.5e-12 73.9 54 57.4
SalBow1G3487 Salvia bowleyana HOM05D001231 ORTHO05D001012 1.9e-11 72.8 51 62.7
Migut.H01661 Erythranthe guttata HOM05D001231 ORTHO05D001012 2.1e-10 69.3 53 54.7
SGA_v2.0_scaffold7G03620 Striga asiatica HOM05D000870 ORTHO05D000715 1.8e-09 66.2 72 52.8
Psat4g112360 Pisum sativum HOM05D001231 ORTHO05D001012 8.8e-09 63.9 77 44.2
CAN.G976.6 Capsicum annuum HOM05D001231 ORTHO05D001012 2.5e-08 62.4 73 41.1
HanXRQChr08g0224941 Helianthus annuus HOM05D001231 ORTHO05D001012 2.5e-08 62.4 73 46.6
PSO541G3846 Papaver somniferum HOM05D001231 ORTHO05D001012 2.5e-08 62.4 72 44.4
PSO675G6539 Papaver somniferum HOM05D001231 ORTHO05D001012 2.5e-08 62.4 72 44.4
PGR102G0532 Punica granatum HOM05D001231 ORTHO05D001012 2.5e-08 62.4 72 45.8
MELO3C005215.2 Cucumis melo HOM05D001231 ORTHO05D001012 4.3e-08 61.6 72 44.4
Actinidia39325 Actinidia chinensis HOM05D001231 ORTHO05D001012 5.7e-08 61.2 73 45.2
HanXRQChr12g0365811 Helianthus annuus HOM05D001231 ORTHO05D001012 5.7e-08 61.2 73 42.5
Psat4g112240 Pisum sativum HOM05D001231 ORTHO05D001012 7.4e-08 60.8 76 44.7
Potri.T011200 Populus trichocarpa HOM05D001231 ORTHO05D001012 7.4e-08 60.8 74 47.3
Potri.T011201 Populus trichocarpa HOM05D001231 ORTHO05D001012 7.4e-08 60.8 74 47.3
Sed0017845 Sechium edule HOM05D001231 ORTHO05D001012 7.4e-08 60.8 71 45.1
GSVIVG01000230001 Vitis vinifera HOM05D001231 ORTHO05D001012 7.4e-08 60.8 58 51.7
Medtr3g097420 Medicago truncatula HOM05D001231 ORTHO05D001012 9.7e-08 60.5 62 46.8
FAN16G3645 Fragaria x ananassa HOM05D001231 ORTHO05D001012 1.3e-07 60.1 74 44.6
Thecc.04G140800 Theobroma cacao HOM05D001231 ORTHO05D001012 1.7e-07 59.7 65 47.7
FAN11G1290 Fragaria x ananassa HOM05D001231 ORTHO05D001012 2.2e-07 59.3 74 44.6
Manes.02G163900 Manihot esculenta HOM05D001231 ORTHO05D001012 2.2e-07 59.3 66 48.5
Phvul.009G158101 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 2.2e-07 59.3 62 45.2
PSO541G0662 Papaver somniferum HOM05D001231 ORTHO05D001012 2.8e-07 58.9 72 44.4
COL.COLO4_16210 Corchorus olitorius HOM05D001231 ORTHO05D001012 3.7e-07 58.5 73 39.7
Cfa002248 Carpinus fangiana HOM05D001231 ORTHO05D001012 4.8e-07 58.2 74 44.6
Migut.F00873 Erythranthe guttata HOM05D001231 ORTHO05D001012 4.8e-07 58.2 50 50.0
Medtr8g075980 Medicago truncatula HOM05D001231 ORTHO05D001012 4.8e-07 58.2 78 44.9
Nn7g38263 Nelumbo nucifera HOM05D001231 ORTHO05D001012 6.3e-07 57.8 65 50.8
Phvul.002G278700 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 6.3e-07 57.8 71 40.8
FvH4_3g14600 Fragaria vesca HOM05D001231 ORTHO05D001012 8.2e-07 57.4 74 41.9
Manes.18G077618 Manihot esculenta HOM05D001231 ORTHO05D001012 8.2e-07 57.4 71 43.7
Medtr8g070790 Medicago truncatula HOM05D001231 ORTHO05D001012 8.2e-07 57.4 70 42.9
RcHm_v2.0_Chr5g0024061 Rosa chinensis HOM05D001231 ORTHO05D001012 8.2e-07 57.4 74 44.6
Sed0025601 Sechium edule HOM05D001231 ORTHO05D001012 8.2e-07 57.4 72 43.1
arahy.Tifrunner.gnm1.ann1.UPL4LC Arachis hypogaea HOM05D001231 ORTHO05D001012 1.1e-06 57.0 66 42.4
Ciclev10006362m.g Citrus clementina HOM05D001231 ORTHO05D001012 1.1e-06 57.0 69 42.0
Medtr8g070780 Medicago truncatula HOM05D001231 ORTHO05D001012 1.1e-06 57.0 70 45.7
Lalb_Chr22g0357361 Lupinus albus HOM05D001231 ORTHO05D001012 1.4e-06 56.6 72 43.1
Psat4g112280 Pisum sativum HOM05D001231 ORTHO05D001012 1.4e-06 56.6 77 41.6
FvH4_3g14620 Fragaria vesca HOM05D001231 ORTHO05D001012 1.8e-06 56.2 75 42.7
Lalb_Chr08g0237751 Lupinus albus HOM05D001231 ORTHO05D001012 1.8e-06 56.2 73 43.8
Lalb_Chr12g0206521 Lupinus albus HOM05D001231 ORTHO05D001012 1.8e-06 56.2 63 46.0
arahy.Tifrunner.gnm1.ann1.IDU4K1 Arachis hypogaea HOM05D001231 ORTHO05D001012 2.4e-06 55.8 70 41.4
DCAR_026846 Daucus carota HOM05D001231 ORTHO05D001012 2.4e-06 55.8 46 54.3
Duzib248G0383 Durio zibethinus HOM05D001231 ORTHO05D001012 2.4e-06 55.8 70 42.9
Duzib268G0639 Durio zibethinus HOM05D001231 ORTHO05D001012 2.4e-06 55.8 71 39.4
Thhalv10005235m.g Eutrema salsugineum HOM05D001231 ORTHO05D001012 2.4e-06 55.8 71 40.8
MD16G1009000 Malus domestica HOM05D001231 ORTHO05D001012 2.4e-06 55.8 69 43.5
Manes.18G077612 Manihot esculenta HOM05D001231 ORTHO05D001012 2.4e-06 55.8 64 43.8
Phvul.009G158000 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 2.4e-06 55.8 73 39.7
Psat4g112000 Pisum sativum HOM05D001231 ORTHO05D001012 2.4e-06 55.8 68 41.2
RcHm_v2.0_Chr5g0024081 Rosa chinensis HOM05D001231 ORTHO05D001012 2.4e-06 55.8 75 42.7
HanXRQChr17g0533331 Helianthus annuus HOM05D001231 ORTHO05D001012 3.1e-06 55.5 66 40.9
MD02G1301000 Malus domestica HOM05D001231 ORTHO05D001012 3.1e-06 55.5 69 43.5
RcHm_v2.0_Chr7g0231101 Rosa chinensis HOM05D001231 ORTHO05D001012 3.1e-06 55.5 73 38.4
Duzib213G0741 Durio zibethinus HOM05D001231 ORTHO05D001012 4.1e-06 55.1 73 41.1
Migut.M01516 Erythranthe guttata HOM05D001231 ORTHO05D001012 4.1e-06 55.1 66 47.0
FAN25G0202 Fragaria x ananassa HOM05D001231 ORTHO05D001012 4.1e-06 55.1 74 41.9
Lsat_1_v5_gn_3_7561 Lactuca sativa HOM05D000756 ORTHO05D000604 4.1e-06 55.1 53 47.2
Medtr8g070770 Medicago truncatula HOM05D001231 ORTHO05D001012 4.1e-06 55.1 68 41.2
Nitab4.5_0007878g0020 Nicotiana tabacum HOM05D001231 ORTHO05D001012 4.1e-06 55.1 75 37.3
Prupe.4G131400 Prunus persica HOM05D001231 ORTHO05D001012 4.1e-06 55.1 74 44.6
PGSC0003DMG400015132 Solanum tuberosum HOM05D001231 ORTHO05D001012 4.1e-06 55.1 65 40.0
SGA_v2.0_scaffold23G10223 Striga asiatica HOM05D001231 ORTHO05D001012 4.1e-06 55.1 64 42.2
MSTRG.13083 Avicennia marina HOM05D001231 ORTHO05D001012 5.3e-06 54.7 71 39.4
MELO3C005214.2 Cucumis melo HOM05D001231 ORTHO05D001012 5.3e-06 54.7 52 48.1
Glyma.06G160400 Glycine max HOM05D001231 ORTHO05D001012 5.3e-06 54.7 62 40.3
MD05G1234500 Malus domestica HOM05D001231 ORTHO05D001012 5.3e-06 54.7 74 44.6
Prupe.7G073300 Prunus persica HOM05D001231 ORTHO05D001012 5.3e-06 54.7 45 53.3
Thecc.02G298100 Theobroma cacao HOM05D001231 ORTHO05D001012 5.3e-06 54.7 71 45.1
arahy.Tifrunner.gnm1.ann1.IS2QLD Arachis hypogaea HOM05D001231 ORTHO05D001012 6.9e-06 54.3 68 42.6
CAN.G282.87 Capsicum annuum HOM05D001231 ORTHO05D001012 6.9e-06 54.3 65 43.1
FvH4_4g36104 Fragaria vesca HOM05D001231 ORTHO05D001012 6.9e-06 54.3 74 39.2
Gorai.002G029600 Gossypium raimondii HOM05D001231 ORTHO05D001012 6.9e-06 54.3 75 41.3
MD00G1135500 Malus domestica HOM05D001231 ORTHO05D001012 6.9e-06 54.3 66 47.0
PGSC0003DMG400015129 Solanum tuberosum HOM05D001231 ORTHO05D001012 6.9e-06 54.3 69 39.1
Nitab4.5_0000374g0060 Nicotiana tabacum HOM05D001231 ORTHO05D001012 9.1e-06 53.9 78 42.3


User provided reference genes

Program Settings