Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow8G1566 Salvia bowleyana HOM05D006251 ORTHO05D007695 5.3e-63 244.2 125 100.0
SalBow8G0233 Salvia bowleyana HOM05D006251 ORTHO05D007695 1.7e-32 142.9 70 100.0
SalBow8G3807 Salvia bowleyana HOM05D006251 ORTHO05D007695 1.0e-29 133.7 65 98.5
SalBow6G1459 Salvia bowleyana HOM05D006251 ORTHO05D007695 1.1e-23 113.6 76 77.6
Phvul.003G040600 Phaseolus vulgaris HOM05D006251 ORTHO05D007695 1.6e-22 109.8 65 87.7
SalBow2G3351 Salvia bowleyana HOM05D006251 ORTHO05D007695 1.6e-22 109.8 65 87.7
VMungo1215G0794 Vigna mungo HOM05D006251 ORTHO05D007695 1.6e-22 109.8 65 87.7
Aa31LG1G1230 Aethionema arabicum HOM05D006251 ORTHO05D007695 2.7e-22 109.0 73 79.5
Ca_05001_v3 Cicer arietinum L. HOM05D006251 ORTHO05D007695 4.6e-22 108.2 65 86.2
Glyma.02G120500 Glycine max HOM05D006251 ORTHO05D007695 4.6e-22 108.2 65 86.2
Lalb_Chr10g0098941 Lupinus albus HOM05D006251 ORTHO05D007695 4.6e-22 108.2 65 86.2
Medtr5g044970 Medicago truncatula HOM05D006251 ORTHO05D007695 4.6e-22 108.2 65 86.2
Psat2g131760 Pisum sativum HOM05D006251 ORTHO05D007695 4.6e-22 108.2 65 86.2
Prupe.1G289400 Prunus persica HOM05D006251 ORTHO05D007695 4.6e-22 108.2 65 86.2
THA.LOC104812006 Tarenaya hassleriana HOM05D006251 ORTHO05D007695 4.6e-22 108.2 65 86.2
TPR.G23760 Trifolium pratense HOM05D006251 ORTHO05D007695 4.6e-22 108.2 65 86.2
arahy.Tifrunner.gnm1.ann1.5K1Z4H Arachis hypogaea HOM05D006251 ORTHO05D007695 6.0e-22 107.8 65 86.2
arahy.Tifrunner.gnm1.ann1.BKZY3B Arachis hypogaea HOM05D006251 ORTHO05D007695 6.0e-22 107.8 65 86.2
MSTRG.2302 Avicennia marina HOM05D006251 ORTHO05D007695 6.0e-22 107.8 65 86.2
Lj2g0007519 Lotus japonicus HOM05D006251 ORTHO05D007695 6.0e-22 107.8 65 86.2
MD13G1060000 Malus domestica HOM05D006251 ORTHO05D007695 6.0e-22 107.8 65 86.2
SGA_v2.0_scaffold59G20670 Striga asiatica HOM05D006251 ORTHO05D007695 6.0e-22 107.8 65 86.2
unitig_22.g6893 Utricularia gibba HOM05D006251 ORTHO05D007695 6.0e-22 107.8 65 86.2
Cpa.g.sc1.151 Carica papaya HOM05D006251 ORTHO05D007695 7.8e-22 107.5 88 68.2
DCAR_030047 Daucus carota HOM05D006251 ORTHO05D007695 7.8e-22 107.5 65 86.2
Eucgr.G02430 Eucalyptus grandis HOM05D006251 ORTHO05D007695 7.8e-22 107.5 65 86.2
Manes.01G026600 Manihot esculenta HOM05D006251 ORTHO05D007695 7.8e-22 107.5 74 77.0
PGR119G0343 Punica granatum HOM05D006251 ORTHO05D007695 7.8e-22 107.5 65 86.2
Atru.chr11.1602 Acer truncatum HOM05D006251 ORTHO05D007695 1.0e-21 107.1 65 84.6
Actinidia16152 Actinidia chinensis HOM05D006251 ORTHO05D007695 1.0e-21 107.1 65 86.2
AL1G25480 Arabidopsis lyrata HOM05D006251 ORTHO05D007695 1.0e-21 107.1 73 78.1
AT1G13690 Arabidopsis thaliana HOM05D006251 ORTHO05D007695 1.0e-21 107.1 73 78.1
BcaB02g06466 Brassica carinata HOM05D006251 ORTHO05D007695 1.0e-21 107.1 73 78.1
BcaC05g25275 Brassica carinata HOM05D006251 ORTHO05D007695 1.0e-21 107.1 73 78.1
C05p11520 Brassica napus HOM05D006251 ORTHO05D007695 1.0e-21 107.1 73 78.1
CSS0009604 Camellia sinensis var. sinensis HOM05D006251 ORTHO05D007695 1.0e-21 107.1 65 84.6
Carub.0001s1343 Capsella rubella HOM05D006251 ORTHO05D007695 1.0e-21 107.1 73 78.1
CARHR014090 Cardamine hirsuta HOM05D006251 ORTHO05D007695 1.0e-21 107.1 73 78.1
ClCG08G010490 Citrullus lanatus HOM05D006251 ORTHO05D007695 1.0e-21 107.1 65 84.6
MELO3C011414.2 Cucumis melo HOM05D006251 ORTHO05D007695 1.0e-21 107.1 65 84.6
CsaV3_6G033740 Cucumis sativus L. HOM05D006251 ORTHO05D007695 1.0e-21 107.1 65 84.6
Migut.E00044 Erythranthe guttata HOM05D006251 ORTHO05D007695 1.0e-21 107.1 65 86.2
Thhalv10008898m.g Eutrema salsugineum HOM05D006251 ORTHO05D007695 1.0e-21 107.1 73 78.1
MD16G1059400 Malus domestica HOM05D006251 ORTHO05D007695 1.0e-21 107.1 65 84.6
Sp1g12220 Schrenkiella parvula HOM05D006251 ORTHO05D007695 1.0e-21 107.1 73 78.1
Ah.03g138780 Amaranthus hybridus HOM05D006251 ORTHO05D007695 1.3e-21 106.7 65 84.6
BolC5t29901H Brassica oleracea HOM05D006251 ORTHO05D007695 1.3e-21 106.7 73 78.1
Cfa008862 Carpinus fangiana HOM05D006251 ORTHO05D007695 1.3e-21 106.7 65 84.6
AUR62007897 Chenopodium quinoa HOM05D006251 ORTHO05D007695 1.3e-21 106.7 65 84.6
Cc11_g11800 Coffea canephora HOM05D006251 ORTHO05D007695 1.3e-21 106.7 65 84.6
Haze_11885 Corylus avellana HOM05D006251 ORTHO05D007695 1.3e-21 106.7 65 84.6
Haze_20966 Corylus avellana HOM05D006251 ORTHO05D007695 1.3e-21 106.7 65 84.6
FAN07G0390 Fragaria x ananassa HOM05D000634 ORTHO05D007695 1.3e-21 106.7 65 84.6
FAN22G1444 Fragaria x ananassa HOM05D006251 ORTHO05D007695 1.3e-21 106.7 65 84.6
MBI16_g03090_MAGBIO Magnolia biondii HOM05D006251 ORTHO05D007695 1.3e-21 106.7 66 83.3
Rhsim09G0125900 Rhododendron simsii HOM05D000634 ORTHO05D007695 1.3e-21 106.7 65 84.6
Sc04g0007470 Simmondsia chinensis HOM05D006251 ORTHO05D007695 1.3e-21 106.7 65 84.6
Thecc.01G144600 Theobroma cacao HOM05D006251 ORTHO05D007695 1.3e-21 106.7 65 84.6
TWI79G1568 Tripterygium wilfordii HOM05D006251 ORTHO05D007695 1.3e-21 106.7 75 73.3
TAR622G1376 Trochodendron aralioides HOM05D006251 ORTHO05D007695 1.3e-21 106.7 66 83.3
vmacro10437 Vaccinium macrocarpon HOM05D006251 ORTHO05D007695 1.3e-21 106.7 65 84.6
BraA06t24166Z Brassica rapa HOM05D006251 ORTHO05D007695 1.7e-21 106.3 73 76.7
CANSAT64G0858 Cannabis sativa HOM05D006251 ORTHO05D007695 1.7e-21 106.3 65 84.6
COL.COLO4_12139 Corchorus olitorius HOM05D006251 ORTHO05D007695 1.7e-21 106.3 65 84.6
Dinv20151 Davidia involucrata HOM05D006251 ORTHO05D007695 1.7e-21 106.3 65 84.6
Duzib147G1163 Durio zibethinus HOM05D006251 ORTHO05D007695 1.7e-21 106.3 65 84.6
ECA246G1802 Erigeron canadensis HOM05D006251 ORTHO05D007695 1.7e-21 106.3 65 84.6
FAN17G1351 Fragaria x ananassa HOM05D006251 ORTHO05D007695 1.7e-21 106.3 65 84.6
Gohir.A12G057700 Gossypium hirsutum HOM05D006251 ORTHO05D007695 1.7e-21 106.3 65 84.6
Gorai.008G060600 Gossypium raimondii HOM05D006251 ORTHO05D007695 1.7e-21 106.3 65 84.6
HanXRQChr15g0477161 Helianthus annuus HOM05D006251 ORTHO05D007695 1.7e-21 106.3 65 84.6
Hma1.2p1_0566F.1_g179960 Hydrangea macrophylla HOM05D006251 ORTHO05D007695 1.7e-21 106.3 65 83.1
QL03p073745 Quercus lobata HOM05D006251 ORTHO05D007695 1.7e-21 106.3 64 85.9
RcHm_v2.0_Chr4g0437961 Rosa chinensis HOM05D006251 ORTHO05D007695 1.7e-21 106.3 65 84.6
HPP92_017644 Vanilla planifolia HOM05D006251 ORTHO05D007695 1.7e-21 106.3 65 84.6
EL10Ac6g15019 Beta vulgaris HOM05D006251 ORTHO05D007695 2.3e-21 105.9 65 84.6
FvH4_4g29710 Fragaria vesca HOM05D006251 ORTHO05D007695 2.3e-21 105.9 65 84.6
FAN12G1640 Fragaria x ananassa HOM05D006251 ORTHO05D007695 2.3e-21 105.9 65 84.6
Glyma.01G062300 Glycine max HOM05D006251 ORTHO05D007695 2.3e-21 105.9 65 84.6
Nitab4.5_0001118g0050 Nicotiana tabacum HOM05D006251 ORTHO05D007695 2.3e-21 105.9 65 84.6
Nitab4.5_0008776g0040 Nicotiana tabacum HOM05D006251 ORTHO05D007695 2.3e-21 105.9 65 84.6
Peaxi162Scf00667g00025 Petunia axillaris HOM05D006251 ORTHO05D007695 2.3e-21 105.9 65 84.6
Potri.008G097500 Populus trichocarpa HOM05D006251 ORTHO05D007695 2.3e-21 105.9 65 84.6
Solyc04g005350.3 Solanum lycopersicum HOM05D006251 ORTHO05D007695 2.3e-21 105.9 65 84.6
Sopen04g001330 Solanum pennellii HOM05D006251 ORTHO05D007695 2.3e-21 105.9 65 84.6
PGSC0003DMG400001940 Solanum tuberosum HOM05D006251 ORTHO05D007695 2.3e-21 105.9 65 84.6
CDE07G1948 Ceratophyllum demersum HOM05D006251 ORTHO05D007695 3.0e-21 105.5 66 81.8
Ciclev10032914m.g Citrus clementina HOM05D006251 ORTHO05D007695 3.0e-21 105.5 65 84.6
PSO017G1239 Papaver somniferum HOM05D006251 ORTHO05D007695 3.0e-21 105.5 69 78.3
PSO478G0833 Papaver somniferum HOM05D006251 ORTHO05D007695 3.0e-21 105.5 69 78.3
GSVIVG01010778001 Vitis vinifera HOM05D006251 ORTHO05D007695 3.0e-21 105.5 65 83.1
Aqoxy3G00920 Aquilegia oxysepala HOM05D006251 ORTHO05D007695 3.9e-21 105.1 66 81.8
Sed0015628 Sechium edule HOM05D006251 ORTHO05D007695 3.9e-21 105.1 65 83.1
Nn3g17499 Nelumbo nucifera HOM05D006251 ORTHO05D007695 5.0e-21 104.8 66 81.8
CiPaw.05G123800 Carya illinoinensis HOM05D006251 ORTHO05D007695 6.6e-21 104.4 65 81.5
Lsat_1_v5_gn_3_53680 Lactuca sativa HOM05D006251 ORTHO05D007695 6.6e-21 104.4 65 83.1
Zm00001eb219260 Zea mays HOM05D006251 ORTHO05D007695 1.9e-20 102.8 65 78.5
Sed0021896 Sechium edule HOM05D006251 ORTHO05D007695 4.3e-20 101.7 65 80.0
ATR0827G163 Amborella trichopoda HOM05D006251 ORTHO05D007695 7.3e-20 100.9 66 78.8
SEGI_14342 Sequoiadendron giganteum HOM05D006251 ORTHO05D007695 6.2e-19 97.8 66 75.8
Potri.010G157000 Populus trichocarpa HOM05D006251 ORTHO05D007695 3.1e-18 95.5 65 78.5
AUR62003080 Chenopodium quinoa HOM05D006251 ORTHO05D007695 1.5e-17 93.2 55 83.6
Gohir.D12G057500 Gossypium hirsutum HOM05D006251 ORTHO05D007695 2.0e-17 92.8 55 83.6
Lj3A1029T38 Lonicera japonica HOM05D006251 ORTHO05D007695 2.6e-17 92.4 95 58.9
Mapoly0003s0262 Marchantia polymorpha HOM05D006251 ORTHO05D007695 1.7e-16 89.7 63 73.0
SMO356G0419 Selaginella moellendorffii HOM05D006251 ORTHO05D007695 2.2e-16 89.4 62 72.6
AagrBONN_evm.TU.Sc2ySwM_344.2145 Anthoceros agrestis HOM05D006251 ORTHO05D007695 1.9e-15 86.3 64 64.1
Pp3c23_9430 Physcomitrium patens HOM05D006251 ORTHO05D007695 1.9e-15 86.3 63 65.1
Nitab4.5_0007615g0010 Nicotiana tabacum HOM05D006251 ORTHO05D007695 2.1e-14 82.8 58 72.4
SalBow7G0227 Salvia bowleyana HOM05D006251 ORTHO05D007695 2.7e-14 82.4 40 97.5
CBR_g28640 Chara braunii HOM05D006251 ORTHO05D007695 7.8e-14 80.9 63 63.5
Cre06.g288750 Chlamydomonas reinhardtii HOM05D006251 ORTHO05D007695 2.8e-11 72.4 65 55.4
MCO13G196 Micromonas commoda HOM05D006251 ORTHO05D007695 1.2e-09 67.0 59 62.7
SalBow7G1628 Salvia bowleyana HOM05D006251 ORTHO05D007695 1.2e-09 67.0 49 73.5
Pp3c24_3880 Physcomitrium patens HOM05D006251 ORTHO05D007695 7.5e-09 64.3 48 60.4
PRCOL_00002021 Prasinoderma coloniale HOM05D006251 ORTHO05D007695 1.7e-08 63.2 65 52.3
Sc12g0002140 Simmondsia chinensis HOM05D000142 ORTHO05D000124 3.7e-08 62.0 78 47.4
CANSAT64G0509 Cannabis sativa HOM05D000142 ORTHO05D000124 6.4e-08 61.2 83 44.6
Atru.chr6.3242 Acer truncatum HOM05D000142 ORTHO05D000124 8.3e-08 60.8 83 45.8
Prupe.3G211900 Prunus persica HOM05D000142 ORTHO05D000124 4.1e-07 58.5 83 42.2
Cfa014327 Carpinus fangiana HOM05D000142 ORTHO05D000124 1.2e-06 57.0 83 42.2
Ca_16277_v3 Cicer arietinum L. HOM05D000142 ORTHO05D000124 1.2e-06 57.0 103 38.8
Haze_12779 Corylus avellana HOM05D000142 ORTHO05D000124 1.2e-06 57.0 83 42.2
Solyc07g049270.4 Solanum lycopersicum HOM05D000142 ORTHO05D000124 1.6e-06 56.6 83 42.2
Hma1.2p1_0445F.1_g154460 Hydrangea macrophylla HOM05D000142 ORTHO05D000124 2.1e-06 56.2 83 41.0
Hma1.2p1_0445F.1_g154470 Hydrangea macrophylla HOM05D000142 ORTHO05D000124 2.1e-06 56.2 83 41.0
Hma1.2p1_2381F.1_g321015 Hydrangea macrophylla HOM05D000142 ORTHO05D000124 2.1e-06 56.2 83 41.0
Phvul.003G250300 Phaseolus vulgaris HOM05D000142 ORTHO05D000124 3.5e-06 55.5 83 39.8
Glyma.07G214800 Glycine max HOM05D000142 ORTHO05D000124 4.6e-06 55.1 83 41.0
vmacro00439 Vaccinium macrocarpon HOM05D000142 ORTHO05D000124 4.6e-06 55.1 80 41.2
arahy.Tifrunner.gnm1.ann1.JG8SFN Arachis hypogaea HOM05D000142 ORTHO05D000124 6.0e-06 54.7 80 42.5
BcaC05g29586 Brassica carinata HOM05D000142 ORTHO05D000124 7.8e-06 54.3 89 37.1
CSS0026082 Camellia sinensis var. sinensis HOM05D000142 ORTHO05D000124 7.8e-06 54.3 67 44.8
CSS0047850 Camellia sinensis var. sinensis HOM05D000142 ORTHO05D000124 7.8e-06 54.3 67 44.8
Gohir.D10G138200 Gossypium hirsutum HOM05D000142 ORTHO05D000124 7.8e-06 54.3 81 38.3
Gorai.011G153300 Gossypium raimondii HOM05D000142 ORTHO05D000124 7.8e-06 54.3 81 38.3
MD09G1112700 Malus domestica HOM05D000142 ORTHO05D000124 7.8e-06 54.3 65 46.2
Sopen07g024600 Solanum pennellii HOM05D000142 ORTHO05D000124 7.8e-06 54.3 83 41.0
HPP92_006952 Vanilla planifolia HOM05D000142 ORTHO05D000124 7.8e-06 54.3 107 38.3


User provided reference genes

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