Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G4573 Salvia bowleyana HOM05D001000 ORTHO05D001896 3.8e-47 191.0 89 100.0
SalBow4G0432 Salvia bowleyana HOM05D001000 ORTHO05D001896 1.5e-43 179.1 89 93.3
SalBow1G1920 Salvia bowleyana HOM05D001000 ORTHO05D001896 2.0e-43 178.7 88 94.3
SalBow4G1207 Salvia bowleyana HOM05D001000 ORTHO05D001896 3.7e-42 174.5 89 91.0
SalBow5G2087 Salvia bowleyana HOM05D001000 ORTHO05D001896 7.0e-41 170.2 86 89.5
SalBow7G2797 Salvia bowleyana HOM05D001000 ORTHO05D001896 1.0e-20 103.2 63 77.8
Migut.J00681 Erythranthe guttata HOM05D001000 ORTHO05D001896 2.1e-13 79.0 48 72.9
MSTRG.5883 Avicennia marina HOM05D001000 ORTHO05D001896 8.9e-12 73.6 50 66.0
Oeu028656.1 Olea europaea HOM05D001000 ORTHO05D001896 1.2e-11 73.2 50 66.0
Peaxi162Scf00419g00035 Petunia axillaris HOM05D001000 ORTHO05D001896 4.4e-11 71.2 48 66.7
Ca_09039_v3 Cicer arietinum L. HOM05D001000 ORTHO05D001896 7.5e-11 70.5 47 70.2
Oeu017709.1 Olea europaea HOM05D001000 ORTHO05D001896 9.8e-11 70.1 50 66.0
TWI74G0536 Tripterygium wilfordii HOM05D001000 ORTHO05D001896 9.8e-11 70.1 67 49.3
Sabra08G0011000 Salix brachista HOM05D001000 ORTHO05D001896 1.3e-10 69.7 68 50.0
CSS0030687 Camellia sinensis var. sinensis HOM05D001000 ORTHO05D001896 2.2e-10 68.9 44 70.5
CSS0043313 Camellia sinensis var. sinensis HOM05D001000 ORTHO05D001896 2.2e-10 68.9 44 70.5
QL04p047041 Quercus lobata HOM05D001000 ORTHO05D001896 2.2e-10 68.9 67 49.3
Cc06_g06330 Coffea canephora HOM05D001000 ORTHO05D001896 4.9e-10 67.8 50 64.0
MSTRG.26612 Avicennia marina HOM05D001000 ORTHO05D001896 1.1e-09 66.6 48 62.5
Prupe.7G098500 Prunus persica HOM05D001000 ORTHO05D001896 1.1e-09 66.6 58 60.3
CAN.G574.38 Capsicum annuum HOM05D001000 ORTHO05D001896 1.4e-09 66.2 50 60.0
Nitab4.5_0002876g0020 Nicotiana tabacum HOM05D001000 ORTHO05D001896 1.4e-09 66.2 47 66.0
Solyc01g007810.1 Solanum lycopersicum HOM05D001000 ORTHO05D001896 1.4e-09 66.2 47 66.0
Sopen01g003350 Solanum pennellii HOM05D001000 ORTHO05D001896 1.4e-09 66.2 47 66.0
PGSC0003DMG400016385 Solanum tuberosum HOM05D001000 ORTHO05D001896 1.4e-09 66.2 47 66.0
GSVIVG01034649001 Vitis vinifera HOM05D001000 ORTHO05D001896 1.4e-09 66.2 76 47.4
Psat3g030320 Pisum sativum HOM05D001000 ORTHO05D001896 1.8e-09 65.9 47 63.8
PSO339G2273 Papaver somniferum HOM05D001000 ORTHO05D001896 2.4e-09 65.5 56 53.6
TPR.G20718 Trifolium pratense HOM05D001000 ORTHO05D001896 4.1e-09 64.7 47 63.8
Actinidia07936 Actinidia chinensis HOM05D001000 ORTHO05D001896 5.4e-09 64.3 47 59.6
Dinv31742 Davidia involucrata HOM05D001000 ORTHO05D001896 5.4e-09 64.3 51 60.8
Oeu009310.1 Olea europaea HOM05D001000 ORTHO05D001896 5.4e-09 64.3 46 60.9
Sabra10G0189000 Salix brachista HOM05D001000 ORTHO05D001896 5.4e-09 64.3 47 63.8
TWI53G1968 Tripterygium wilfordii HOM05D001000 ORTHO05D001896 5.4e-09 64.3 49 61.2
EL10Ac7g16817 Beta vulgaris HOM05D001000 ORTHO05D001896 7.0e-09 63.9 50 58.0
PSO384G5089 Papaver somniferum HOM05D001000 ORTHO05D001896 7.0e-09 63.9 56 51.8
Ah.15g090540 Amaranthus hybridus HOM05D001000 ORTHO05D001896 9.2e-09 63.5 47 61.7
ATR0772G061 Amborella trichopoda HOM05D001000 ORTHO05D001896 1.2e-08 63.2 46 69.6
Aqoxy4G02690 Aquilegia oxysepala HOM05D001000 ORTHO05D001896 1.2e-08 63.2 73 46.6
Manes.08G031100 Manihot esculenta HOM05D001000 ORTHO05D001896 1.2e-08 63.2 44 63.6
Medtr7g105780 Medicago truncatula HOM05D001000 ORTHO05D001896 1.2e-08 63.2 47 63.8
QL07p037531 Quercus lobata HOM05D001000 ORTHO05D001896 1.2e-08 63.2 47 63.8
MSTRG.10391 Avicennia marina HOM05D001000 ORTHO05D001896 1.6e-08 62.8 48 64.6
CANSAT56G4195 Cannabis sativa HOM05D001000 ORTHO05D001896 1.6e-08 62.8 47 61.7
Lj1P1044T15 Lonicera japonica HOM05D001000 ORTHO05D001896 1.6e-08 62.8 52 59.6
Potri.008G017500 Populus trichocarpa HOM05D001000 ORTHO05D001896 1.6e-08 62.8 47 61.7
Potri.016G072900 Populus trichocarpa HOM05D001000 ORTHO05D001896 1.6e-08 62.8 48 58.3
Actinidia03843 Actinidia chinensis HOM05D001000 ORTHO05D001896 2.0e-08 62.4 74 44.6
Haze_03473 Corylus avellana HOM05D001000 ORTHO05D001896 2.0e-08 62.4 47 61.7
Haze_19677 Corylus avellana HOM05D001000 ORTHO05D001896 2.0e-08 62.4 47 63.8
DCAR_020722 Daucus carota HOM05D001000 ORTHO05D001896 2.0e-08 62.4 45 62.2
Nn6g34762 Nelumbo nucifera HOM05D001000 ORTHO05D001896 2.0e-08 62.4 47 66.0
TAR633G2146 Trochodendron aralioides HOM05D001000 ORTHO05D001896 2.0e-08 62.4 71 46.5
Actinidia06174 Actinidia chinensis HOM05D001000 ORTHO05D001896 2.7e-08 62.0 48 56.2
Dinv12320 Davidia involucrata HOM05D001000 ORTHO05D001896 2.7e-08 62.0 48 60.4
MD14G1035600 Malus domestica HOM05D001000 ORTHO05D001896 2.7e-08 62.0 47 66.0
MSTRG.9045 Avicennia marina HOM05D001000 ORTHO05D001896 3.5e-08 61.6 47 59.6
FAN09G4292 Fragaria x ananassa HOM05D001000 ORTHO05D001896 3.5e-08 61.6 47 63.8
MD12G1034200 Malus domestica HOM05D001000 ORTHO05D001896 3.5e-08 61.6 54 57.4
Prupe.2G071500 Prunus persica HOM05D001000 ORTHO05D001896 3.5e-08 61.6 47 59.6
Sc02g0000030 Simmondsia chinensis HOM05D001000 ORTHO05D001896 3.5e-08 61.6 62 46.8
Sc02g0000520 Simmondsia chinensis HOM05D001000 ORTHO05D001896 3.5e-08 61.6 62 46.8
unitig_22.g5137 Utricularia gibba HOM05D001000 ORTHO05D001896 3.5e-08 61.6 69 49.3
Lj1g0011176 Lotus japonicus HOM05D001000 ORTHO05D001896 4.5e-08 61.2 47 61.7
Medtr1g111640 Medicago truncatula HOM05D001000 ORTHO05D001896 4.5e-08 61.2 63 52.4
Potri.010G241500 Populus trichocarpa HOM05D001000 ORTHO05D001896 4.5e-08 61.2 43 67.4
Thecc.05G100500 Theobroma cacao HOM05D001000 ORTHO05D001896 4.5e-08 61.2 48 64.6
Cpa.g.sc104.65 Carica papaya HOM05D001000 ORTHO05D001896 5.9e-08 60.8 48 64.6
Ca_25649_v3 Cicer arietinum L. HOM05D001000 ORTHO05D001896 5.9e-08 60.8 48 60.4
FvH4_6g19870 Fragaria vesca HOM05D001000 ORTHO05D001896 5.9e-08 60.8 47 63.8
FAN02G4019 Fragaria x ananassa HOM05D001000 ORTHO05D001896 5.9e-08 60.8 47 63.8
FAN05G4507 Fragaria x ananassa HOM05D001000 ORTHO05D001896 5.9e-08 60.8 47 63.8
FAN05G4882 Fragaria x ananassa HOM05D001000 ORTHO05D001896 5.9e-08 60.8 47 63.8
FAN14G5247 Fragaria x ananassa HOM05D001000 ORTHO05D001896 5.9e-08 60.8 47 63.8
ClCG10G018540 Citrullus lanatus HOM05D001000 ORTHO05D001896 7.8e-08 60.5 50 58.0
Duzib106G1160 Durio zibethinus HOM05D001000 ORTHO05D001896 7.8e-08 60.5 47 57.4
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 7.8e-08 60.5 47 61.7
Nitab4.5_0000020g0390 Nicotiana tabacum HOM05D001000 ORTHO05D001896 7.8e-08 60.5 45 62.2
TAR623G0951 Trochodendron aralioides HOM05D001000 ORTHO05D001896 7.8e-08 60.5 72 40.3
Cfa010537 Carpinus fangiana HOM05D001000 ORTHO05D001896 1.0e-07 60.1 43 65.1
CiPaw.13G042900 Carya illinoinensis HOM05D001000 ORTHO05D001896 1.0e-07 60.1 47 59.6
Ciclev10012467m.g Citrus clementina HOM05D001000 ORTHO05D001896 1.0e-07 60.1 47 61.7
Migut.F00859 Erythranthe guttata HOM05D001000 ORTHO05D001896 1.0e-07 60.1 47 57.4
Psat6g230280 Pisum sativum HOM05D001000 ORTHO05D001896 1.0e-07 60.1 47 61.7
TPR.G26283 Trifolium pratense HOM05D001000 ORTHO05D001896 1.0e-07 60.1 47 61.7
Atru.chr8.1399 Acer truncatum HOM05D001000 ORTHO05D001896 1.3e-07 59.7 44 65.9
Cfa016666 Carpinus fangiana HOM05D001000 ORTHO05D001896 1.3e-07 59.7 46 60.9
Lalb_Chr06g0166271 Lupinus albus HOM05D001000 ORTHO05D001896 1.3e-07 59.7 47 59.6
Manes.09G048800 Manihot esculenta HOM05D001000 ORTHO05D001896 1.3e-07 59.7 44 59.1
CiPaw.10G015100 Carya illinoinensis HOM05D001000 ORTHO05D001896 1.7e-07 59.3 47 59.6
MELO3C009514.2 Cucumis melo HOM05D001000 ORTHO05D001896 1.7e-07 59.3 48 58.3
CsaV3_3G037710 Cucumis sativus L. HOM05D001000 ORTHO05D001896 1.7e-07 59.3 48 58.3
Duzib093G1555 Durio zibethinus HOM05D001000 ORTHO05D001896 1.7e-07 59.3 48 58.3
Duzib114G0026 Durio zibethinus HOM05D001000 ORTHO05D001896 1.7e-07 59.3 69 42.0
Lj5g0023342 Lotus japonicus HOM05D001000 ORTHO05D001896 1.7e-07 59.3 47 59.6
SGA_v2.0_scaffold13G06669 Striga asiatica HOM05D001000 ORTHO05D001896 1.7e-07 59.3 46 58.7
Eucgr.A02609 Eucalyptus grandis HOM05D001000 ORTHO05D001896 2.3e-07 58.9 46 60.9
Glyma.20G112400 Glycine max HOM05D001000 ORTHO05D001896 2.3e-07 58.9 47 59.6
Os11g0156300 Oryza sativa ssp. japonica HOM05D001000 ORTHO05D001896 2.3e-07 58.9 47 61.7
SHI32523 Sapria himalayana HOM05D001000 ORTHO05D001896 2.3e-07 58.9 45 57.8
Thecc.10G115800 Theobroma cacao HOM05D001000 ORTHO05D001896 2.3e-07 58.9 67 43.3
MSTRG.27557 Avicennia marina HOM05D001000 ORTHO05D001896 2.9e-07 58.5 47 59.6
Duzib128G0514 Durio zibethinus HOM05D001000 ORTHO05D001896 2.9e-07 58.5 67 43.3
Duzib128G1274 Durio zibethinus HOM05D001000 ORTHO05D001896 2.9e-07 58.5 48 60.4
Potri.006G205500 Populus trichocarpa HOM05D001000 ORTHO05D001896 2.9e-07 58.5 47 57.4
RcHm_v2.0_Chr3g0475291 Rosa chinensis HOM05D001000 ORTHO05D001896 2.9e-07 58.5 45 64.4
Zm00001eb083640 Zea mays HOM05D001000 ORTHO05D001896 2.9e-07 58.5 73 43.8
CANSAT64G2242 Cannabis sativa HOM05D001000 ORTHO05D001896 3.9e-07 58.2 50 52.0
CiPaw.14G034400 Carya illinoinensis HOM05D001000 ORTHO05D001896 3.9e-07 58.2 50 56.0
COL.COLO4_37435 Corchorus olitorius HOM05D001000 ORTHO05D001896 3.9e-07 58.2 47 55.3
Glyma.10G277300 Glycine max HOM05D001000 ORTHO05D001896 5.0e-07 57.8 47 57.4
HanXRQChr02g0053511 Helianthus annuus HOM05D001000 ORTHO05D001896 5.0e-07 57.8 43 62.8
Sabra06G0158500 Salix brachista HOM05D001000 ORTHO05D001896 5.0e-07 57.8 43 62.8
MELO3C012340.2 Cucumis melo HOM05D001000 ORTHO05D001896 6.6e-07 57.4 48 56.2
CsaV3_5G035260 Cucumis sativus L. HOM05D001000 ORTHO05D001896 6.6e-07 57.4 48 56.2
MBI04_g12482_MAGBIO Magnolia biondii HOM05D001000 ORTHO05D022295 6.6e-07 57.4 46 54.3
PGR044G1080 Punica granatum HOM05D001000 ORTHO05D001896 6.6e-07 57.4 51 54.9
Ah.08g210200 Amaranthus hybridus HOM05D001000 ORTHO05D001896 8.6e-07 57.0 43 58.1
ATR0620G117 Amborella trichopoda HOM05D001000 ORTHO05D001896 8.6e-07 57.0 54 48.1
COL.COLO4_29618 Corchorus olitorius HOM05D001000 ORTHO05D001896 8.6e-07 57.0 48 54.2
Lsat_1_v5_gn_2_105781 Lactuca sativa HOM05D001000 ORTHO05D010404 8.6e-07 57.0 47 55.3
Phvul.001G194000 Phaseolus vulgaris HOM05D001000 ORTHO05D001896 8.6e-07 57.0 47 59.6
TWI63G0964 Tripterygium wilfordii HOM05D001000 ORTHO05D001896 8.6e-07 57.0 47 55.3
VMungo1383G2300 Vigna mungo HOM05D001000 ORTHO05D001896 8.6e-07 57.0 47 59.6
CiPaw.09G018500 Carya illinoinensis HOM05D001000 ORTHO05D001896 1.1e-06 56.6 47 57.4
Lalb_Chr21g0309071 Lupinus albus HOM05D001000 ORTHO05D001896 1.1e-06 56.6 47 55.3
Phvul.007G024100 Phaseolus vulgaris HOM05D001000 ORTHO05D001896 1.1e-06 56.6 47 55.3
Sed0016750 Sechium edule HOM05D001000 ORTHO05D001896 1.1e-06 56.6 48 56.2
Solyc11g006670.1 Solanum lycopersicum HOM05D001000 ORTHO05D001896 1.1e-06 56.6 44 59.1
VMungo0720G2559 Vigna mungo HOM05D001000 ORTHO05D001896 1.1e-06 56.6 47 55.3
Lalb_Chr25g0288111 Lupinus albus HOM05D001000 ORTHO05D001896 1.5e-06 56.2 46 56.5
Eucgr.J00277 Eucalyptus grandis HOM05D001000 ORTHO05D001896 1.9e-06 55.8 47 57.4
Os04g0415100 Oryza sativa ssp. japonica HOM05D001000 ORTHO05D001896 1.9e-06 55.8 47 53.2
SalBow5G2061 Salvia bowleyana HOM05D001000 ORTHO05D001896 1.9e-06 55.8 44 61.4
Gohir.A06G169700 Gossypium hirsutum HOM05D001000 ORTHO05D001896 2.5e-06 55.5 67 41.8
HanXRQChr11g0341931 Helianthus annuus HOM05D001000 ORTHO05D001896 2.5e-06 55.5 43 58.1
Lalb_Chr02g0154641 Lupinus albus HOM05D001000 ORTHO05D001896 2.5e-06 55.5 62 48.4
Oeu033284.1 Olea europaea HOM05D001000 ORTHO05D001896 2.5e-06 55.5 47 55.3
Os12g0158300 Oryza sativa ssp. japonica HOM05D001000 ORTHO05D001896 2.5e-06 55.5 47 59.6
Solyc05g055220.1 Solanum lycopersicum HOM05D001000 ORTHO05D001896 2.5e-06 55.5 46 54.3
PGSC0003DMG400007601 Solanum tuberosum HOM05D001000 ORTHO05D001896 2.5e-06 55.5 47 57.4
Gohir.D06G177300 Gossypium hirsutum HOM05D001000 ORTHO05D001896 3.3e-06 55.1 67 40.3
Gorai.N007900 Gossypium raimondii HOM05D001000 ORTHO05D001896 3.3e-06 55.1 67 40.3
PGR004G2682 Punica granatum HOM05D001000 ORTHO05D001896 3.3e-06 55.1 48 52.1
Sopen11g002600 Solanum pennellii HOM05D001000 ORTHO05D001896 3.3e-06 55.1 44 59.1
unitig_8.g3556 Utricularia gibba HOM05D001000 ORTHO05D001896 3.3e-06 55.1 63 46.0
Atru.chr3.3149 Acer truncatum HOM05D001000 ORTHO05D001896 4.3e-06 54.7 47 55.3
CAN.G143.14 Capsicum annuum HOM05D001000 ORTHO05D001896 4.3e-06 54.7 47 55.3
MELO3C019910.2 Cucumis melo HOM05D001000 ORTHO05D001896 4.3e-06 54.7 46 56.5
CsaV3_6G004380 Cucumis sativus L. HOM05D001000 ORTHO05D001896 4.3e-06 54.7 46 56.5
DCAR_006331 Daucus carota HOM05D001000 ORTHO05D001896 4.3e-06 54.7 47 55.3
Gohir.D04G095500 Gossypium hirsutum HOM05D001000 ORTHO05D001896 4.3e-06 54.7 48 54.2
Gorai.009G398200 Gossypium raimondii HOM05D001000 ORTHO05D001896 4.3e-06 54.7 48 54.2
Hma1.2p1_0457F.1_g156930 Hydrangea macrophylla HOM05D001000 ORTHO05D001896 4.3e-06 54.7 47 57.4
Peaxi162Scf00519g00047 Petunia axillaris HOM05D001000 ORTHO05D001896 4.3e-06 54.7 47 55.3
Rhsim03G0096600 Rhododendron simsii HOM05D001000 ORTHO05D001896 4.3e-06 54.7 44 56.8
SalBow3G4358 Salvia bowleyana HOM05D001000 ORTHO05D001896 4.3e-06 54.7 44 56.8
Sopen05g033660 Solanum pennellii HOM05D001000 ORTHO05D001896 4.3e-06 54.7 46 54.3
Actinidia32060 Actinidia chinensis HOM05D001000 ORTHO05D001896 5.6e-06 54.3 48 58.3
CDE06G0635 Ceratophyllum demersum HOM05D001000 ORTHO05D001896 5.6e-06 54.3 43 60.5
ClCG05G021880 Citrullus lanatus HOM05D001000 ORTHO05D001896 5.6e-06 54.3 48 54.2
Glyma.03G200100 Glycine max HOM05D001000 ORTHO05D001896 5.6e-06 54.3 44 61.4
Atru.chr3.3150 Acer truncatum HOM05D001000 ORTHO05D001896 7.3e-06 53.9 47 55.3
CDE11G1090 Ceratophyllum demersum HOM05D001000 ORTHO05D022295 7.3e-06 53.9 63 44.4
Glyma.19G197700 Glycine max HOM05D001000 ORTHO05D001896 7.3e-06 53.9 43 62.8
Oeu034986.1 Olea europaea HOM05D001000 ORTHO05D001896 7.3e-06 53.9 43 58.1
PGSC0003DMG400023395 Solanum tuberosum HOM05D001000 ORTHO05D001896 7.3e-06 53.9 46 52.2
TAR636G1824 Trochodendron aralioides HOM05D001000 ORTHO05D001896 7.3e-06 53.9 47 57.4
CsaV3_6G040950 Cucumis sativus L. HOM05D001000 ORTHO05D001896 9.5e-06 53.5 50 48.0
TAR369G0145 Trochodendron aralioides HOM05D001000 ORTHO05D001896 9.5e-06 53.5 47 51.1
HPP92_009776 Vanilla planifolia HOM05D001000 ORTHO05D001896 9.5e-06 53.5 47 59.6
Zm00001eb092300 Zea mays HOM05D001000 ORTHO05D001896 9.5e-06 53.5 47 55.3
Zm00001eb197480 Zea mays HOM05D001000 ORTHO05D001896 9.5e-06 53.5 47 55.3


User provided reference genes

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