Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G4346 Salvia bowleyana HOM05D002063 ORTHO05D002075 1.9e-165 585.9 313 100.0
Oeu053234.3 Olea europaea HOM05D002063 ORTHO05D002075 8.5e-17 92.0 107 48.6
FAN05G4781 Fragaria x ananassa HOM05D002063 ORTHO05D002075 1.4e-16 91.3 341 29.9
FAN09G1545 Fragaria x ananassa HOM05D002063 ORTHO05D002075 1.4e-16 91.3 125 41.6
FAN02G3018 Fragaria x ananassa HOM05D002063 ORTHO05D002075 2.5e-16 90.5 336 28.9
RcHm_v2.0_Chr2g0129801 Rosa chinensis HOM05D002063 ORTHO05D002075 4.2e-16 89.7 126 42.1
Cpa.g.sc52.165 Carica papaya HOM05D002063 ORTHO05D002075 4.6e-15 86.3 109 44.0
FAN14G2532 Fragaria x ananassa HOM05D002063 ORTHO05D002075 7.9e-15 85.5 337 28.2
FvH4_6g27510 Fragaria vesca HOM05D002063 ORTHO05D002075 1.0e-14 85.1 126 40.5
Oeu024445.3 Olea europaea HOM05D002063 ORTHO05D002075 6.7e-14 82.4 105 45.7
Lalb_Chr14g0367531 Lupinus albus HOM05D002063 ORTHO05D002075 8.8e-14 82.0 150 36.0
Lsat_1_v5_gn_8_141101 Lactuca sativa HOM05D002063 ORTHO05D002075 1.1e-13 81.6 266 28.9
Actinidia11158 Actinidia chinensis HOM05D002063 ORTHO05D002075 1.5e-13 81.3 136 40.4
MD09G1236600 Malus domestica HOM05D002063 ORTHO05D002075 2.0e-13 80.9 94 46.8
TWI14G1322 Tripterygium wilfordii HOM05D002063 ORTHO05D002075 2.0e-13 80.9 110 42.7
MSTRG.14309 Avicennia marina HOM05D002063 ORTHO05D002075 5.7e-13 79.3 107 43.9
PGR142G0459 Punica granatum HOM05D002063 ORTHO05D002075 7.4e-13 79.0 96 47.9
Prupe.3G117500 Prunus persica HOM05D002063 ORTHO05D002075 9.7e-13 78.6 119 39.5
Ciclev10014575m.g Citrus clementina HOM05D002063 ORTHO05D002075 1.3e-12 78.2 95 43.2
Glyma.12G128800 Glycine max HOM05D002063 ORTHO05D002075 1.3e-12 78.2 107 42.1
GSVIVG01020715001 Vitis vinifera HOM05D002063 ORTHO05D002075 1.3e-12 78.2 118 43.2
Aqoxy1G02039 Aquilegia oxysepala HOM05D002063 ORTHO05D002075 1.7e-12 77.8 95 45.3
Glyma.06G276800 Glycine max HOM05D002063 ORTHO05D002075 1.7e-12 77.8 107 42.1
Peaxi162Scf00469g00410 Petunia axillaris HOM05D002063 ORTHO05D002075 1.7e-12 77.8 93 45.2
Rhsim04G0074600 Rhododendron simsii HOM05D002063 ORTHO05D002075 1.7e-12 77.8 100 46.0
Atru.chr6.2786 Acer truncatum HOM05D002063 ORTHO05D002075 2.8e-12 77.0 145 33.8
Dinv07711 Davidia involucrata HOM05D002063 ORTHO05D002075 2.8e-12 77.0 110 41.8
Thecc.01G151300 Theobroma cacao HOM05D002063 ORTHO05D002075 2.8e-12 77.0 94 47.9
Atru.chr6.2783 Acer truncatum HOM05D002063 ORTHO05D002075 3.7e-12 76.6 145 33.8
MD17G1266400 Malus domestica HOM05D002063 ORTHO05D002075 3.7e-12 76.6 99 43.4
Ah.01g015800 Amaranthus hybridus HOM05D002063 ORTHO05D002075 4.8e-12 76.3 109 45.0
COL.COLO4_33589 Corchorus olitorius HOM05D002063 ORTHO05D002075 4.8e-12 76.3 131 37.4
Sabra14G0107900 Salix brachista HOM05D002063 ORTHO05D002075 4.8e-12 76.3 122 39.3
TPR.G4349 Trifolium pratense HOM05D002063 ORTHO05D002075 4.8e-12 76.3 94 44.7
ClCG07G002750 Citrullus lanatus HOM05D002063 ORTHO05D002075 6.3e-12 75.9 91 44.0
CsaV3_7G005700 Cucumis sativus L. HOM05D002063 ORTHO05D002075 6.3e-12 75.9 91 42.9
MBI07_g09571_MAGBIO Magnolia biondii HOM05D002063 ORTHO05D002075 6.3e-12 75.9 128 34.4
Manes.01G132600 Manihot esculenta HOM05D002063 ORTHO05D002075 6.3e-12 75.9 142 35.2
Phvul.011G129400 Phaseolus vulgaris HOM05D002063 ORTHO05D002075 6.3e-12 75.9 136 36.0
Eucgr.K01136 Eucalyptus grandis HOM05D002063 ORTHO05D002075 8.2e-12 75.5 138 37.0
Nn1g09178 Nelumbo nucifera HOM05D002063 ORTHO05D002075 8.2e-12 75.5 105 41.0
Duzib147G0122 Durio zibethinus HOM05D002063 ORTHO05D002075 1.4e-11 74.7 120 40.8
HanXRQChr17g0559231 Helianthus annuus HOM05D002063 ORTHO05D002075 1.8e-11 74.3 393 26.7
Psat0s3463g0040 Pisum sativum HOM05D002063 ORTHO05D002075 1.8e-11 74.3 94 46.8
CAN.G1716.2 Capsicum annuum HOM05D002063 ORTHO05D002075 3.1e-11 73.6 93 41.9
Migut.M00271 Erythranthe guttata HOM05D002063 ORTHO05D002075 3.1e-11 73.6 262 30.9
Gorai.008G099200 Gossypium raimondii HOM05D002063 ORTHO05D002075 3.1e-11 73.6 101 40.6
Lj3g0021532 Lotus japonicus HOM05D002063 ORTHO05D002075 3.1e-11 73.6 99 42.4
arahy.Tifrunner.gnm1.ann1.5IK05W Arachis hypogaea HOM05D002063 ORTHO05D002075 4.1e-11 73.2 180 32.2
Migut.H02149 Erythranthe guttata HOM05D002063 ORTHO05D002075 4.1e-11 73.2 99 42.4
Gohir.D12G091600 Gossypium hirsutum HOM05D002063 ORTHO05D002075 4.1e-11 73.2 101 40.6
arahy.Tifrunner.gnm1.ann1.8LST2U Arachis hypogaea HOM05D002063 ORTHO05D002075 5.3e-11 72.8 109 37.6
Ca_01449_v3 Cicer arietinum L. HOM05D002063 ORTHO05D002075 5.3e-11 72.8 147 34.7
Medtr4g080050 Medicago truncatula HOM05D002063 ORTHO05D002075 5.3e-11 72.8 94 44.7
arahy.Tifrunner.gnm1.ann1.F9SG0G Arachis hypogaea HOM05D002063 ORTHO05D002075 6.9e-11 72.4 183 32.2
arahy.Tifrunner.gnm1.ann1.HJ4PFL Arachis hypogaea HOM05D002063 ORTHO05D002075 6.9e-11 72.4 180 32.2
arahy.Tifrunner.gnm1.ann1.UD7KHE Arachis hypogaea HOM05D002063 ORTHO05D002075 6.9e-11 72.4 109 37.6
SalBow7G0816 Salvia bowleyana HOM05D002063 ORTHO05D002075 6.9e-11 72.4 96 42.7
Potri.014G142800 Populus trichocarpa HOM05D002063 ORTHO05D002075 9.1e-11 72.0 140 32.1
VMungo1127G1441 Vigna mungo HOM05D002063 ORTHO05D002075 9.1e-11 72.0 141 34.0
Sed0008738 Sechium edule HOM05D002063 ORTHO05D002075 1.2e-10 71.6 97 39.2
Solyc12g013960.3 Solanum lycopersicum HOM05D002063 ORTHO05D002075 1.2e-10 71.6 93 41.9
Cfa023598 Carpinus fangiana HOM05D002063 ORTHO05D002075 1.5e-10 71.2 94 44.7
CiPaw.04G133300 Carya illinoinensis HOM05D002063 ORTHO05D002075 1.5e-10 71.2 95 44.2
PSO675G5163 Papaver somniferum HOM05D002063 ORTHO05D002075 1.5e-10 71.2 138 32.6
Gohir.A12G091500 Gossypium hirsutum HOM05D002063 ORTHO05D002075 2.0e-10 70.9 99 37.4
AUR62037396 Chenopodium quinoa HOM05D002063 ORTHO05D002075 2.6e-10 70.5 92 45.7
Lj3g0021644 Lotus japonicus HOM05D002063 ORTHO05D002075 2.6e-10 70.5 86 45.3
Peaxi162Scf00229g01212 Petunia axillaris HOM05D002063 ORTHO05D002075 2.6e-10 70.5 93 40.9
Sed0003403 Sechium edule HOM05D002063 ORTHO05D002075 2.6e-10 70.5 113 38.1
Ca_18870_v3 Cicer arietinum L. HOM05D002063 ORTHO05D002075 3.4e-10 70.1 109 39.4
Nitab4.5_0000249g0250 Nicotiana tabacum HOM05D002063 ORTHO05D002075 3.4e-10 70.1 93 44.1
QL08p041891 Quercus lobata HOM05D002063 ORTHO05D002075 3.4e-10 70.1 93 43.0
MELO3C018721.2 Cucumis melo HOM05D002063 ORTHO05D002075 4.5e-10 69.7 198 28.8
CAN.G1081.10 Capsicum annuum HOM05D002063 ORTHO05D002075 5.9e-10 69.3 144 30.6
AUR62041743 Chenopodium quinoa HOM05D002063 ORTHO05D002075 5.9e-10 69.3 92 45.7
Nn1g04435 Nelumbo nucifera HOM05D002063 ORTHO05D002075 5.9e-10 69.3 108 41.7
TWI59G1423 Tripterygium wilfordii HOM05D002063 ORTHO05D002075 5.9e-10 69.3 86 44.2
CSS0017486 Camellia sinensis var. sinensis HOM05D002063 ORTHO05D002075 7.7e-10 68.9 129 36.4
Haze_13399 Corylus avellana HOM05D002063 ORTHO05D002075 7.7e-10 68.9 126 37.3
Solyc07g055140.3 Solanum lycopersicum HOM05D002063 ORTHO05D002075 7.7e-10 68.9 105 40.0
Sopen07g027090 Solanum pennellii HOM05D002063 ORTHO05D002075 7.7e-10 68.9 105 40.0
Sopen12g005710 Solanum pennellii HOM05D002063 ORTHO05D002075 7.7e-10 68.9 175 28.6
TAR624G0717 Trochodendron aralioides HOM05D002063 ORTHO05D002075 1.0e-09 68.6 94 44.7
Nitab4.5_0006875g0040 Nicotiana tabacum HOM05D002063 ORTHO05D002075 1.3e-09 68.2 93 43.0
CiPaw.03G194900 Carya illinoinensis HOM05D002063 ORTHO05D002075 1.7e-09 67.8 94 42.6
Hund00879 Selenicereus undatus HOM05D002063 ORTHO05D002075 1.7e-09 67.8 189 30.2
Lj8A100T109 Lonicera japonica HOM05D002063 ORTHO05D002075 2.2e-09 67.4 107 38.3
Oeu020920.1 Olea europaea HOM05D002063 ORTHO05D002075 2.2e-09 67.4 200 30.0
A05p14640 Brassica napus HOM05D002063 ORTHO05D002075 2.9e-09 67.0 193 29.5
ClCG02G017850 Citrullus lanatus HOM05D002063 ORTHO05D002075 2.9e-09 67.0 92 40.2
vmacro12381 Vaccinium macrocarpon HOM05D002063 ORTHO05D002075 2.9e-09 67.0 92 42.4
VMungo1080G0812 Vigna mungo HOM05D002063 ORTHO05D002075 2.9e-09 67.0 87 43.7
MSTRG.7414 Avicennia marina HOM05D002063 ORTHO05D002075 3.8e-09 66.6 91 38.5
BraA05t20394Z Brassica rapa HOM05D002063 ORTHO05D002075 3.8e-09 66.6 193 29.5
Hma1.2p1_0178F.1_g078740 Hydrangea macrophylla HOM05D002063 ORTHO05D002075 3.8e-09 66.6 139 30.9
Ah.01g003610 Amaranthus hybridus HOM05D002063 ORTHO05D002075 6.5e-09 65.9 149 31.5
Rhsim06G0130600 Rhododendron simsii HOM05D002063 ORTHO05D002075 6.5e-09 65.9 93 40.9
PGSC0003DMG400020440 Solanum tuberosum HOM05D002063 ORTHO05D002075 6.5e-09 65.9 144 30.6
HPP92_006254 Vanilla planifolia HOM05D002063 ORTHO05D002075 6.5e-09 65.9 91 39.6
Cc05_g08420 Coffea canephora HOM05D002063 ORTHO05D002075 8.5e-09 65.5 100 38.0
ATR0602G233 Amborella trichopoda HOM05D002063 ORTHO05D002075 1.1e-08 65.1 74 44.6
Glyma.12G211300 Glycine max HOM05D002063 ORTHO05D002075 1.1e-08 65.1 93 41.9
AT2G30990 Arabidopsis thaliana HOM05D002063 ORTHO05D002075 1.4e-08 64.7 133 32.3
MSTRG.16154 Avicennia marina HOM05D002063 ORTHO05D002075 1.4e-08 64.7 105 36.2
Cpa.g.sc7.77 Carica papaya HOM05D002063 ORTHO05D002075 1.4e-08 64.7 141 31.2
Glyma.13G290300 Glycine max HOM05D002063 ORTHO05D002075 1.4e-08 64.7 133 34.6
Sabra04G0037500 Salix brachista HOM05D002063 ORTHO05D002075 1.4e-08 64.7 100 36.0
Potri.004G057800 Populus trichocarpa HOM05D002063 ORTHO05D002075 1.9e-08 64.3 101 35.6
CDE02G4132 Ceratophyllum demersum HOM05D002063 ORTHO05D002075 2.5e-08 63.9 94 37.2
Medtr2g093020 Medicago truncatula HOM05D002063 ORTHO05D002075 2.5e-08 63.9 68 47.1
Nitab4.5_0005828g0030 Nicotiana tabacum HOM05D002063 ORTHO05D002075 2.5e-08 63.9 94 40.4
Phvul.005G094800 Phaseolus vulgaris HOM05D002063 ORTHO05D002075 2.5e-08 63.9 138 34.1
BcaC02g11186 Brassica carinata HOM05D002063 ORTHO05D002075 3.2e-08 63.5 100 36.0
C04p19490 Brassica napus HOM05D002063 ORTHO05D002075 3.2e-08 63.5 100 36.0
BolC4t23481H Brassica oleracea HOM05D002063 ORTHO05D002075 3.2e-08 63.5 100 36.0
DCAR_013273 Daucus carota HOM05D002063 ORTHO05D002075 3.2e-08 63.5 105 33.3
EL10Ac9g20950 Beta vulgaris HOM05D002063 ORTHO05D002075 4.2e-08 63.2 90 43.3
CANSAT64G2021 Cannabis sativa HOM05D002063 ORTHO05D002075 5.5e-08 62.8 96 40.6
MELO3C013577.2 Cucumis melo HOM05D002063 ORTHO05D002075 7.2e-08 62.4 100 38.0
Sp4g13480 Schrenkiella parvula HOM05D002063 ORTHO05D002075 7.2e-08 62.4 93 35.5
SEGI_16088 Sequoiadendron giganteum HOM05D002063 ORTHO05D002075 7.2e-08 62.4 202 30.2
Nitab4.5_0006142g0010 Nicotiana tabacum HOM05D002063 ORTHO05D002075 9.4e-08 62.0 136 33.1
PSO229G0031 Papaver somniferum HOM05D002063 ORTHO05D002075 9.4e-08 62.0 92 40.2
VMungo0540G2378 Vigna mungo HOM05D002063 ORTHO05D002075 9.4e-08 62.0 105 36.2
Hund07788 Selenicereus undatus HOM05D002063 ORTHO05D002075 1.2e-07 61.6 143 35.7
ECA233G1685 Erigeron canadensis HOM05D002063 ORTHO05D002075 1.6e-07 61.2 226 31.4
Lalb_Chr03g0029971 Lupinus albus HOM05D002063 ORTHO05D002075 1.6e-07 61.2 101 38.6
RcHm_v2.0_Chr7g0242591 Rosa chinensis HOM05D002063 ORTHO05D002075 1.6e-07 61.2 46 58.7
unitig_85.g27375 Utricularia gibba HOM05D002063 ORTHO05D002075 1.6e-07 61.2 94 38.3
BcaB02g10357 Brassica carinata HOM05D002063 ORTHO05D002075 2.1e-07 60.8 94 39.4
Potri.011G067000 Populus trichocarpa HOM05D002063 ORTHO05D002075 2.1e-07 60.8 103 35.0
CARHR124530 Cardamine hirsuta HOM05D002063 ORTHO05D002075 3.6e-07 60.1 118 35.6
Ciclev10014532m.g Citrus clementina HOM05D002063 ORTHO05D002075 4.7e-07 59.7 118 36.4
Dinv40689 Davidia involucrata HOM05D002063 ORTHO05D002075 4.7e-07 59.7 107 37.4
Sc12g0003530 Simmondsia chinensis HOM05D002063 ORTHO05D002075 4.7e-07 59.7 74 45.9
THA.LOC104800840 Tarenaya hassleriana HOM05D002063 ORTHO05D002075 4.7e-07 59.7 66 43.9
Lj1A680T13 Lonicera japonica HOM05D002063 ORTHO05D002075 6.1e-07 59.3 105 36.2
Lju1655A0T37 Lonicera japonica HOM05D002063 ORTHO05D002075 6.1e-07 59.3 105 36.2
CsaV3_6G015180 Cucumis sativus L. HOM05D002063 ORTHO05D002075 7.9e-07 58.9 165 32.7
Phvul.006G175400 Phaseolus vulgaris HOM05D002063 ORTHO05D002075 7.9e-07 58.9 110 35.5
Psat5g276520 Pisum sativum HOM05D002063 ORTHO05D002075 7.9e-07 58.9 69 46.4
SGA_v2.0_scaffold313G48292 Striga asiatica HOM05D002063 ORTHO05D002075 7.9e-07 58.9 135 28.9
THA.LOC104815844 Tarenaya hassleriana HOM05D002063 ORTHO05D002075 1.4e-06 58.2 95 34.7
unitig_46.g18266 Utricularia gibba HOM05D002063 ORTHO05D002075 1.4e-06 58.2 90 37.8
unitig_49.g30741 Utricularia gibba HOM05D002063 ORTHO05D002075 1.4e-06 58.2 90 37.8
unitig_50.g33285 Utricularia gibba HOM05D002063 ORTHO05D002075 1.4e-06 58.2 90 37.8
Thhalv10016438m.g Eutrema salsugineum HOM05D002063 ORTHO05D002075 1.8e-06 57.8 95 36.8
QL05p047487 Quercus lobata HOM05D002063 ORTHO05D002075 3.0e-06 57.0 134 31.3
AL4G26030 Arabidopsis lyrata HOM05D002063 ORTHO05D002075 3.9e-06 56.6 201 29.4
COL.COLO4_31282 Corchorus olitorius HOM05D002063 ORTHO05D002075 3.9e-06 56.6 113 33.6
Eucgr.E02752 Eucalyptus grandis HOM05D002063 ORTHO05D002075 3.9e-06 56.6 101 36.6
Glyma.13G229000 Glycine max HOM05D002063 ORTHO05D002075 3.9e-06 56.6 137 29.9
Eucgr.A01920 Eucalyptus grandis HOM05D002063 ORTHO05D002075 5.1e-06 56.2 93 35.5
Nitab4.5_0006324g0010 Nicotiana tabacum HOM05D002063 ORTHO05D002075 5.1e-06 56.2 96 37.5
A04p23710 Brassica napus HOM05D002063 ORTHO05D002075 6.7e-06 55.8 69 36.2
BraA04t17897Z Brassica rapa HOM05D002063 ORTHO05D002075 6.7e-06 55.8 69 36.2
Carub.0004s1221 Capsella rubella HOM05D002063 ORTHO05D002075 8.8e-06 55.5 93 38.7
ClCG03G007640 Citrullus lanatus HOM05D002063 ORTHO05D002075 8.8e-06 55.5 76 42.1
Nitab4.5_0000605g0110 Nicotiana tabacum HOM05D002063 ORTHO05D002075 8.8e-06 55.5 96 37.5
Sabra11G0048600 Salix brachista HOM05D002063 ORTHO05D002075 8.8e-06 55.5 79 39.2


User provided reference genes

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