Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 0.0e+00 2837.8 1471 100.0
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 0.0e+00 1728.0 1432 64.7
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 0.0e+00 1720.3 1400 65.9
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 0.0e+00 1647.5 1407 62.9
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 0.0e+00 1515.4 1434 57.7
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1426.0 1401 55.0
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1422.5 1368 57.2
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1422.1 1395 54.8
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1421.8 1401 54.7
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 0.0e+00 1420.6 1451 54.9
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 0.0e+00 1418.7 1395 56.3
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1418.7 1415 54.5
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 0.0e+00 1418.3 1438 54.7
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 0.0e+00 1416.7 1401 54.8
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1405.6 1391 56.4
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 0.0e+00 1405.2 1398 54.4
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 0.0e+00 1404.8 1432 54.3
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 0.0e+00 1404.4 1409 57.0
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 0.0e+00 1404.4 1392 54.6
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 0.0e+00 1399.8 1397 55.0
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 0.0e+00 1398.6 1391 54.6
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1384.8 1490 53.2
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1384.4 1379 55.1
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 0.0e+00 1383.6 1411 55.5
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 0.0e+00 1382.9 1430 54.1
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 0.0e+00 1370.1 1395 54.3
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1369.8 1379 54.7
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 0.0e+00 1367.4 1466 52.4
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 0.0e+00 1360.9 1353 55.4
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 0.0e+00 1360.5 1415 53.6
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 0.0e+00 1349.0 1394 54.0
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 0.0e+00 1343.2 1341 56.3
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 0.0e+00 1330.1 1381 52.7
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 0.0e+00 1326.2 1401 52.7
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 0.0e+00 1322.4 1412 53.3
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 0.0e+00 1322.0 1411 52.2
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 0.0e+00 1321.6 1426 52.9
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 0.0e+00 1316.2 1367 53.9
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1312.0 1402 51.9
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 0.0e+00 1309.3 1403 52.0
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 0.0e+00 1300.0 1409 51.8
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1298.9 1447 50.7
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 0.0e+00 1295.8 1401 52.4
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1295.4 1426 51.3
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 0.0e+00 1293.9 1409 51.7
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 0.0e+00 1286.6 1429 51.1
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 0.0e+00 1284.2 1370 52.6
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1283.1 1400 50.9
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 0.0e+00 1281.5 1380 53.0
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1275.0 1388 51.9
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1273.5 1409 51.2
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 0.0e+00 1266.5 1381 52.5
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 0.0e+00 1259.6 1395 50.8
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 0.0e+00 1259.2 1403 51.2
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1258.4 1401 51.4
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 0.0e+00 1255.0 1396 50.6
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 0.0e+00 1253.4 1376 51.3
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1252.3 1407 50.3
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1250.7 1371 51.5
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 0.0e+00 1250.3 1391 50.7
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 0.0e+00 1245.3 1388 51.2
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 0.0e+00 1244.2 1408 49.6
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 0.0e+00 1231.1 1393 50.5
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 0.0e+00 1230.7 1239 53.8
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1217.2 1384 49.8
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1209.5 1385 50.1
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 0.0e+00 1206.4 1385 49.6
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 0.0e+00 1204.5 1387 50.0
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 0.0e+00 1200.7 1415 49.3
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1200.3 1385 49.7
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1191.4 1589 45.6
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 0.0e+00 1182.2 1141 57.2
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 0.0e+00 1180.6 1402 48.6
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 0.0e+00 1169.1 1378 48.3
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 0.0e+00 1150.6 1408 46.3
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 0.0e+00 1146.0 1364 48.5
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1141.3 1387 47.4
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1119.0 1631 43.7
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 0.0e+00 1092.8 1135 53.9
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 3.3e-305 1052.4 1376 43.8
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 2.0e-281 973.4 1059 52.2
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 1.5e-273 947.2 1053 50.2
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 5.7e-273 945.3 1178 45.8
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 3.2e-268 929.5 1016 51.0
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 6.8e-258 895.2 1020 50.7
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 7.3e-228 795.4 842 53.0
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 1.2e-227 794.7 844 51.9
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 1.1e-220 771.5 872 51.0
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 4.4e-217 759.6 732 55.3
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 2.1e-211 740.7 760 52.2
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 5.8e-193 679.5 1377 35.6
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 2.7e-182 644.0 1447 33.7
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 4.8e-171 606.7 1442 31.6
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 5.0e-168 596.7 525 60.2
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 6.1e-150 536.6 631 50.1
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 2.0e-145 521.5 457 60.8
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 1.2e-137 495.7 456 58.6
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 1.5e-135 488.8 549 50.3
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 2.3e-133 481.5 555 49.9
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 6.1e-126 456.8 664 40.5
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 3.1e-125 454.5 1027 33.0
Haze_07823 Corylus avellana HOM05D004277 ORTHO05D005148 7.8e-121 439.9 340 65.3
Cpa.g.sc34.11 Carica papaya HOM05D004277 ORTHO05D005148 4.3e-119 434.1 412 57.3
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 1.1e-93 349.7 564 41.7
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 2.4e-93 348.6 853 33.6
Nitab4.5_0009962g0020 Nicotiana tabacum HOM05D004277 ORTHO05D005148 4.9e-91 340.9 267 65.9
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.5e-87 329.3 472 39.6
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 3.3e-79 301.6 483 42.4
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 6.0e-73 280.8 380 43.9
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.2e-68 266.5 456 39.5
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 3.8e-67 261.5 360 41.9
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 1.0e-64 253.4 170 77.1
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 3.1e-61 241.9 162 70.4
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 3.6e-57 228.4 365 42.5
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 6.3e-54 217.6 138 73.2
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 8.5e-51 207.2 231 51.1
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 1.1e-50 206.8 428 35.5
MD10G1205800 Malus domestica HOM05D004277 ORTHO05D005148 1.4e-45 189.9 224 50.0
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 2.9e-43 182.2 226 46.9
MD05G1224300 Malus domestica HOM05D004277 ORTHO05D005148 3.2e-42 178.7 148 62.8
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 1.6e-41 176.4 251 39.4
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 2.1e-41 176.0 169 55.0
TAR624G0115 Trochodendron aralioides HOM05D004277 ORTHO05D005148 3.9e-40 171.8 178 56.2
TPR.G40005 Trifolium pratense HOM05D004277 ORTHO05D005148 3.8e-35 155.2 149 57.0
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 3.2e-34 152.1 1234 21.9
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 5.5e-34 151.4 263 35.7
BcaB02g08672 Brassica carinata HOM05D004277 ORTHO05D005148 2.0e-31 142.9 170 50.6
CBR_g39747 Chara braunii HOM05D004277 ORTHO05D005148 3.1e-29 135.6 610 24.1
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 1.7e-27 129.8 457 30.2
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 1.6e-25 123.2 152 47.4
SHI21617 Sapria himalayana HOM05D004277 ORTHO05D005148 2.1e-25 122.9 142 46.5
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 2.7e-25 122.5 227 37.9
Zm00001eb060300 Zea mays HOM05D004277 ORTHO05D005148 2.3e-24 119.4 128 50.0
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 3.0e-24 119.0 1182 21.9
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 4.9e-22 111.7 93 57.0
MELO3C029569.2 Cucumis melo HOM05D004277 ORTHO05D005148 8.3e-22 110.9 77 64.9
CDE05G3501 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 1.3e-19 103.6 107 51.4
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 2.9e-19 102.4 589 22.6
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 5.0e-19 101.7 109 48.6
MELO3C027882.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.6e-17 96.7 149 44.3
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 1.8e-16 93.2 91 57.1
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 4.0e-16 92.0 180 36.1
Zm00001eb269250 Zea mays HOM05D004277 ORTHO05D005148 5.2e-16 91.7 91 50.5
Actinidia07382 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.2e-15 90.5 148 37.8
MD10G1205700 Malus domestica HOM05D004277 ORTHO05D005148 1.5e-15 90.1 103 49.5
TPR.G28108 Trifolium pratense HOM05D004277 ORTHO05D005148 3.4e-15 89.0 96 47.9
MD10G1205600 Malus domestica HOM05D004277 ORTHO05D005148 9.8e-15 87.4 60 63.3
Cpa.g.sc34.6 Carica papaya HOM05D004277 ORTHO05D005148 8.3e-14 84.3 84 48.8
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 1.6e-12 80.1 57 68.4
SEGI_27653 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 7.8e-12 77.8 121 40.5
FAN06G0062 Fragaria x ananassa HOM05D016453 ORTHO05D017011 1.3e-11 77.0 142 38.7
FAN12G1216 Fragaria x ananassa HOM05D016453 ORTHO05D017011 2.9e-11 75.9 142 38.7
Actinidia07375 Actinidia chinensis HOM05D004277 ORTHO05D005148 3.3e-10 72.4 142 35.9
TPR.G17466 Trifolium pratense HOM05D004277 ORTHO05D005148 7.3e-10 71.2 63 63.5
TPR.G236 Trifolium pratense HOM05D004277 ORTHO05D005148 8.0e-09 67.8 53 62.3
Hma1.2p1_0148F.1_g065920 Hydrangea macrophylla HOM05D001726 ORTHO05D001761 1.0e-08 67.4 76 47.4
Zm00001eb329120 Zea mays HOM05D002219 ORTHO05D012612 1.8e-08 66.6 64 51.6
FvH4_7g12450 Fragaria vesca HOM05D016453 ORTHO05D017011 2.3e-08 66.2 120 39.2
FAN06G4064 Fragaria x ananassa HOM05D016453 ORTHO05D017011 3.1e-08 65.9 124 37.1
QL12p004446 Quercus lobata HOM05D004277 ORTHO05D050645 8.9e-08 64.3 70 50.0
Actinidia07374 Actinidia chinensis HOM05D004277 ORTHO05D005148 7.5e-07 61.2 143 35.0
QL04p080502 Quercus lobata HOM05D004277 ORTHO05D005148 9.8e-07 60.8 61 50.8
SHI21618 Sapria himalayana HOM05D004277 ORTHO05D005148 1.7e-06 60.1 68 51.5
Actinidia07381 Actinidia chinensis HOM05D004277 ORTHO05D005148 6.4e-06 58.2 157 31.8


User provided reference genes

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