Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G4100 Salvia bowleyana HOM05D003712 ORTHO05D004368 1.7e-38 162.2 81 100.0
SalBow7G0868 Salvia bowleyana HOM05D003712 ORTHO05D004368 1.4e-27 125.9 92 70.7
Migut.M00335 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.4e-19 99.4 95 52.6
Migut.M00339 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.5e-18 95.9 95 52.6
Ciclev10017864m.g Citrus clementina HOM05D003712 ORTHO05D004368 6.4e-17 90.5 90 55.6
Ciclev10003398m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.9e-16 89.0 87 54.0
Ciclev10033348m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.2e-15 86.3 85 54.1
Prupe.3G230500 Prunus persica HOM05D003712 ORTHO05D004368 1.2e-15 86.3 89 52.8
Oeu032463.1 Olea europaea HOM05D003712 ORTHO05D004368 2.7e-15 85.1 82 53.7
Oeu032464.1 Olea europaea HOM05D003712 ORTHO05D004368 2.7e-15 85.1 83 51.8
MBI18_g37562_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 4.6e-15 84.3 93 46.2
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 7.8e-15 83.6 74 56.8
MD17G1084800 Malus domestica HOM05D003712 ORTHO05D004368 7.8e-15 83.6 93 50.5
COL.COLO4_06989 Corchorus olitorius HOM05D003712 ORTHO05D004368 1.0e-14 83.2 93 48.4
Prupe.3G230700 Prunus persica HOM05D003712 ORTHO05D004368 1.0e-14 83.2 97 46.4
Ciclev10003665m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.3e-14 82.8 84 52.4
FAN14G2952 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.3e-14 82.8 83 51.8
FAN14G3502 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.3e-14 82.8 83 51.8
Gorai.011G140900 Gossypium raimondii HOM05D003712 ORTHO05D004368 1.3e-14 82.8 89 44.9
Hma1.2p1_0565F.1_g179590 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 1.7e-14 82.4 85 49.4
Prupe.3G230600 Prunus persica HOM05D003712 ORTHO05D004368 1.7e-14 82.4 89 51.7
Gorai.011G141000 Gossypium raimondii HOM05D003712 ORTHO05D004368 2.3e-14 82.0 97 43.3
Gohir.D10G127800 Gossypium hirsutum HOM05D003712 ORTHO05D004368 3.0e-14 81.6 89 43.8
Gohir.D10G127900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 3.0e-14 81.6 97 43.3
Manes.13G034200 Manihot esculenta HOM05D003712 ORTHO05D004368 3.0e-14 81.6 87 51.7
FAN02G1220 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.0e-14 80.9 69 58.0
FAN14G3156 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.0e-14 80.9 90 47.8
Prupe.3G230400 Prunus persica HOM05D003712 ORTHO05D004368 6.6e-14 80.5 90 51.1
Actinidia24056 Actinidia chinensis HOM05D003712 ORTHO05D004368 8.6e-14 80.1 96 44.8
FvH4_6g44501 Fragaria vesca HOM05D003712 ORTHO05D004368 1.1e-13 79.7 86 50.0
FAN14G5484 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.1e-13 79.7 86 50.0
Gohir.A10G139000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.5e-13 79.3 89 41.6
Hma1.2p1_0565F.1_g179610 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 1.5e-13 79.3 90 43.3
Lsat_1_v5_gn_4_56561 Lactuca sativa HOM05D003712 ORTHO05D004368 1.5e-13 79.3 92 47.8
Lsat_1_v5_gn_4_56721 Lactuca sativa HOM05D003712 ORTHO05D004368 1.5e-13 79.3 92 47.8
FvH4_5g34303 Fragaria vesca HOM05D003712 ORTHO05D004368 2.5e-13 78.6 83 48.2
FAN08G3545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.5e-13 78.6 83 48.2
Phvul.002G222400 Phaseolus vulgaris HOM05D003712 ORTHO05D004368 2.5e-13 78.6 75 50.7
FvH4_3g39481 Fragaria vesca HOM05D003712 ORTHO05D004368 5.6e-13 77.4 86 46.5
FAN21G1030 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.6e-13 77.4 87 46.0
Hma1.2p1_0565F.1_g179580 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 5.6e-13 77.4 86 46.5
Lsat_1_v5_gn_4_56621 Lactuca sativa HOM05D003712 ORTHO05D004368 5.6e-13 77.4 92 46.7
Manes.12G082800 Manihot esculenta HOM05D003712 ORTHO05D004368 5.6e-13 77.4 88 44.3
TPR.G22155 Trifolium pratense HOM05D003712 ORTHO05D004368 5.6e-13 77.4 82 46.3
TPR.G32428 Trifolium pratense HOM05D003712 ORTHO05D004368 5.6e-13 77.4 84 45.2
FvH4_6g44841 Fragaria vesca HOM05D003712 ORTHO05D004368 7.3e-13 77.0 66 57.6
Potri.005G224300 Populus trichocarpa HOM05D003712 ORTHO05D004368 7.3e-13 77.0 93 40.9
Potri.007G109600 Populus trichocarpa HOM05D003712 ORTHO05D004368 7.3e-13 77.0 91 47.3
FAN18G4187 Fragaria x ananassa HOM05D003712 ORTHO05D004368 9.5e-13 76.6 83 47.0
HanXRQChr16g0517551 Helianthus annuus HOM05D003712 ORTHO05D004368 9.5e-13 76.6 88 46.6
Lsat_1_v5_gn_4_56741 Lactuca sativa HOM05D003712 ORTHO05D004368 9.5e-13 76.6 94 45.7
Lsat_1_v5_gn_4_56681 Lactuca sativa HOM05D003712 ORTHO05D004368 1.2e-12 76.3 92 46.7
FvH4_3g39491 Fragaria vesca HOM05D003712 ORTHO05D004368 2.1e-12 75.5 87 43.7
Glyma.07G190500 Glycine max HOM05D003712 ORTHO05D004368 2.1e-12 75.5 84 45.2
FAN25G3769 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.8e-12 75.1 87 43.7
RcHm_v2.0_Chr2g0161661 Rosa chinensis HOM05D003712 ORTHO05D004368 2.8e-12 75.1 47 68.1
RcHm_v2.0_Chr2g0161721 Rosa chinensis HOM05D003712 ORTHO05D004368 2.8e-12 75.1 47 68.1
Gohir.A10G138900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 3.6e-12 74.7 48 60.4
Migut.H01521 Erythranthe guttata HOM05D003712 ORTHO05D004368 4.7e-12 74.3 86 48.8
Eucgr.I00207 Eucalyptus grandis HOM05D003712 ORTHO05D004368 4.7e-12 74.3 85 44.7
Cfa014527 Carpinus fangiana HOM05D003712 ORTHO05D004368 6.2e-12 73.9 87 42.5
DCAR_008079 Daucus carota HOM05D003712 ORTHO05D004368 6.2e-12 73.9 92 45.7
DCAR_008081 Daucus carota HOM05D003712 ORTHO05D004368 6.2e-12 73.9 92 45.7
FvH4_6g24132 Fragaria vesca HOM05D003712 ORTHO05D004368 6.2e-12 73.9 75 52.0
Lsat_1_v5_gn_4_56541 Lactuca sativa HOM05D003712 ORTHO05D004368 6.2e-12 73.9 90 42.2
Cpa.g.sc228.6 Carica papaya HOM05D003712 ORTHO05D004368 8.1e-12 73.6 96 42.7
FAN11G3078 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.1e-12 73.6 92 42.4
Gohir.A06G127300 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.1e-11 73.2 94 39.4
Prupe.3G230900 Prunus persica HOM05D003712 ORTHO05D004368 1.1e-11 73.2 81 46.9
DCAR_024926 Daucus carota HOM05D003712 ORTHO05D004368 1.4e-11 72.8 83 48.2
Peaxi162Scf00485g00072 Petunia axillaris HOM05D003712 ORTHO05D004368 1.4e-11 72.8 94 45.7
ECA234G4130 Erigeron canadensis HOM05D003712 ORTHO05D004368 1.8e-11 72.4 89 40.4
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 1.8e-11 72.4 45 68.9
Lj4g0026887 Lotus japonicus HOM05D003712 ORTHO05D004368 1.8e-11 72.4 78 46.2
Os01g0783000 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 1.8e-11 72.4 49 59.2
DCAR_008077 Daucus carota HOM05D003712 ORTHO05D004368 2.3e-11 72.0 91 46.2
Prupe.1G064500 Prunus persica HOM05D003712 ORTHO05D004368 2.3e-11 72.0 48 60.4
QL01p014092 Quercus lobata HOM05D003712 ORTHO05D004368 2.3e-11 72.0 89 42.7
Potri.002G038350 Populus trichocarpa HOM05D003712 ORTHO05D004368 3.1e-11 71.6 65 50.8
Potri.007G106900 Populus trichocarpa HOM05D003712 ORTHO05D004368 3.1e-11 71.6 89 46.1
Dinv13825 Davidia involucrata HOM05D003712 ORTHO05D004368 4.0e-11 71.2 48 62.5
Potri.007G117900 Populus trichocarpa HOM05D003712 ORTHO05D004368 4.0e-11 71.2 89 46.1
TPR.G32437 Trifolium pratense HOM05D003712 ORTHO05D004368 4.0e-11 71.2 86 47.7
MBI06_g08453_MAGBIO Magnolia biondii HOM05D003712 ORTHO05D004368 5.2e-11 70.9 86 44.2
Nitab4.5_0005244g0050 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.2e-11 70.9 58 56.9
RcHm_v2.0_Chr7g0234891 Rosa chinensis HOM05D003712 ORTHO05D004368 5.2e-11 70.9 49 57.1
DCAR_004145 Daucus carota HOM05D003712 ORTHO05D004368 6.8e-11 70.5 83 45.8
Medtr4g091020 Medicago truncatula HOM05D003712 ORTHO05D004368 6.8e-11 70.5 88 44.3
Potri.005G061780 Populus trichocarpa HOM05D003712 ORTHO05D004368 6.8e-11 70.5 88 46.6
RcHm_v2.0_Chr5g0071201 Rosa chinensis HOM05D003712 ORTHO05D004368 6.8e-11 70.5 78 47.4
Nitab4.5_0008774g0010 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.2e-10 69.7 81 45.7
TAR626G1156 Trochodendron aralioides HOM05D003712 ORTHO05D004368 1.2e-10 69.7 94 41.5
FAN02G2973 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.5e-10 69.3 82 46.3
FAN14G4046 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.5e-10 69.3 82 46.3
Glyma.08G058700 Glycine max HOM05D003712 ORTHO05D004368 1.5e-10 69.3 75 49.3
Thecc.06G200700 Theobroma cacao HOM05D003712 ORTHO05D004368 1.5e-10 69.3 95 40.0
Gohir.D06G128000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 2.0e-10 68.9 94 38.3
Gorai.010G149700 Gossypium raimondii HOM05D003712 ORTHO05D004368 2.0e-10 68.9 94 38.3
Medtr4g091010 Medicago truncatula HOM05D003712 ORTHO05D004368 2.0e-10 68.9 85 47.1
Zm00001eb369810 Zea mays HOM05D003712 ORTHO05D004368 2.0e-10 68.9 47 59.6
CANSAT56G2493 Cannabis sativa HOM05D003712 ORTHO05D004368 2.6e-10 68.6 102 38.2
Peaxi162Scf00779g00018 Petunia axillaris HOM05D003712 ORTHO05D004368 2.6e-10 68.6 86 41.9
SalBow8G4951 Salvia bowleyana HOM05D003712 ORTHO05D004368 2.6e-10 68.6 91 40.7
Nitab4.5_0000649g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.4e-10 68.2 86 43.0
RcHm_v2.0_Chr5g0006151 Rosa chinensis HOM05D003712 ORTHO05D004368 3.4e-10 68.2 92 40.2
TAR626G0105 Trochodendron aralioides HOM05D003712 ORTHO05D004368 3.4e-10 68.2 94 40.4
Haze_06583 Corylus avellana HOM05D003712 ORTHO05D004368 4.4e-10 67.8 95 41.1
Migut.M00336 Erythranthe guttata HOM05D003712 ORTHO05D004368 4.4e-10 67.8 83 39.8
FAN21G1388 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.8e-10 67.4 92 41.3
Oeu006542.1 Olea europaea HOM05D003712 ORTHO05D004368 5.8e-10 67.4 89 40.4
Actinidia09903 Actinidia chinensis HOM05D003712 ORTHO05D004368 7.5e-10 67.0 50 52.0
CiPaw.07G040700 Carya illinoinensis HOM05D003712 ORTHO05D004368 7.5e-10 67.0 79 41.8
FAN16G2504 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.5e-10 67.0 50 56.0
FvH4_3g03882 Fragaria vesca HOM05D003712 ORTHO05D004368 9.9e-10 66.6 95 38.9
Nitab4.5_0004216g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 9.9e-10 66.6 69 50.7
arahy.Tifrunner.gnm1.ann1.UHMW3K Arachis hypogaea HOM05D003712 ORTHO05D004368 1.3e-09 66.2 76 40.8
FAN16G1684 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.3e-09 66.2 90 38.9
HanXRQChr16g0517561 Helianthus annuus HOM05D003712 ORTHO05D004368 1.3e-09 66.2 81 46.9
Lsat_1_v5_gn_4_69400 Lactuca sativa HOM05D003712 ORTHO05D004368 1.3e-09 66.2 53 45.3
MBI19_g03250_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D008234 1.3e-09 66.2 47 57.4
Sed0020030 Sechium edule HOM05D003712 ORTHO05D004368 1.3e-09 66.2 83 41.0
FvH4_6g44545 Fragaria vesca HOM05D003712 ORTHO05D004368 1.7e-09 65.9 82 46.3
Lj4g0012776 Lotus japonicus HOM05D003712 ORTHO05D004368 1.7e-09 65.9 69 44.9
Peaxi162Scf00089g01522 Petunia axillaris HOM05D003712 ORTHO05D004368 1.7e-09 65.9 92 41.3
Actinidia11811 Actinidia chinensis HOM05D003712 ORTHO05D004368 2.2e-09 65.5 48 54.2
DCAR_004146 Daucus carota HOM05D003712 ORTHO05D004368 2.2e-09 65.5 91 42.9
Medtr4g091000 Medicago truncatula HOM05D003712 ORTHO05D004368 2.2e-09 65.5 72 43.1
FAN18G0797 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.9e-09 65.1 91 42.9
Peaxi162Scf00779g00008 Petunia axillaris HOM05D003712 ORTHO05D004368 2.9e-09 65.1 79 40.5
DCAR_028776 Daucus carota HOM05D003712 ORTHO05D004368 3.7e-09 64.7 38 60.5
FAN09G2580 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.7e-09 64.7 49 55.1
PGSC0003DMG400042227 Solanum tuberosum HOM05D003712 ORTHO05D004368 3.7e-09 64.7 45 55.6
Aqoxy4G02044 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 4.9e-09 64.3 84 38.1
FAN25G2638 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.9e-09 64.3 46 52.2
Nitab4.5_0014858g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.9e-09 64.3 81 35.8
FvH4_3g03881 Fragaria vesca HOM05D003712 ORTHO05D004368 6.4e-09 63.9 91 39.6
Nitab4.5_0002791g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.4e-09 63.9 87 35.6
Nitab4.5_0008654g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.4e-09 63.9 80 35.0
Eucgr.E03691 Eucalyptus grandis HOM05D003712 ORTHO05D004368 8.3e-09 63.5 47 53.2
FAN16G2577 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.3e-09 63.5 46 52.2
HanXRQChr05g0131191 Helianthus annuus HOM05D003712 ORTHO05D004368 8.3e-09 63.5 84 38.1
Nitab4.5_0002956g0060 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.1e-08 63.2 89 36.0
RcHm_v2.0_Chr2g0161751 Rosa chinensis HOM05D003712 ORTHO05D004368 1.1e-08 63.2 77 44.2
PGSC0003DMG401022401 Solanum tuberosum HOM05D003712 ORTHO05D004368 1.1e-08 63.2 80 40.0
ATR0693G124 Amborella trichopoda HOM05D003712 ORTHO05D004368 1.4e-08 62.8 89 34.8
Aqoxy5G01667 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.4e-08 62.8 82 39.0
CiPaw.10G118000 Carya illinoinensis HOM05D003712 ORTHO05D004368 1.4e-08 62.8 93 35.5
DCAR_004147 Daucus carota HOM05D003712 ORTHO05D004368 1.4e-08 62.8 105 33.3
Sed0026588 Sechium edule HOM05D003712 ORTHO05D004368 1.4e-08 62.8 85 38.8
DCAR_012976 Daucus carota HOM05D003712 ORTHO05D004368 1.9e-08 62.4 48 45.8
FvH4_5g34304 Fragaria vesca HOM05D003712 ORTHO05D004368 1.9e-08 62.4 82 46.3
Nitab4.5_0001871g0120 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.9e-08 62.4 47 44.7
Haze_13069 Corylus avellana HOM05D003712 ORTHO05D004368 2.4e-08 62.0 86 38.4
FvH4_5g02870 Fragaria vesca HOM05D003712 ORTHO05D004368 2.4e-08 62.0 85 47.1
Aqoxy4G02036 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 3.2e-08 61.6 84 36.9
ClCG00G003860 Citrullus lanatus HOM05D003712 ORTHO05D004368 3.2e-08 61.6 46 50.0
ClCG01G022520 Citrullus lanatus HOM05D003712 ORTHO05D004368 3.2e-08 61.6 46 50.0
COL.COLO4_31595 Corchorus olitorius HOM05D003712 ORTHO05D004368 3.2e-08 61.6 89 38.2
RcHm_v2.0_Chr5g0006161 Rosa chinensis HOM05D003712 ORTHO05D004368 4.1e-08 61.2 46 52.2
Aqoxy5G01666 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 5.4e-08 60.8 79 39.2
ClCG00G003850 Citrullus lanatus HOM05D003712 ORTHO05D004368 5.4e-08 60.8 46 54.3
ClCG01G022510 Citrullus lanatus HOM05D003712 ORTHO05D004368 5.4e-08 60.8 46 54.3
DCAR_004148 Daucus carota HOM05D003712 ORTHO05D004368 5.4e-08 60.8 49 49.0
FAN11G0545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.4e-08 60.8 45 48.9
Oeu006541.1 Olea europaea HOM05D003712 ORTHO05D004368 5.4e-08 60.8 94 39.4
CsaV3_6G049680 Cucumis sativus L. HOM05D003712 ORTHO05D004368 7.1e-08 60.5 46 50.0
Nitab4.5_0005389g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 7.1e-08 60.5 93 35.5
Aqoxy4G02045 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 9.2e-08 60.1 92 34.8
ECA236G2370 Erigeron canadensis HOM05D003712 ORTHO05D004368 9.2e-08 60.1 49 53.1
FAN25G1764 Fragaria x ananassa HOM05D003712 ORTHO05D004368 9.2e-08 60.1 46 54.3
MD09G1090300 Malus domestica HOM05D003712 ORTHO05D004368 1.2e-07 59.7 85 36.5
Os01g0782901 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 1.6e-07 59.3 51 47.1
Prupe.4G037900 Prunus persica HOM05D003712 ORTHO05D004368 1.6e-07 59.3 85 37.6
FAN18G2182 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.1e-07 58.9 85 45.9
HanXRQChr15g0488611 Helianthus annuus HOM05D003712 ORTHO05D004368 2.1e-07 58.9 48 47.9
HanXRQChr15g0488621 Helianthus annuus HOM05D003712 ORTHO05D004368 2.1e-07 58.9 48 47.9
Solyc07g054700.3 Solanum lycopersicum HOM05D003712 ORTHO05D004368 2.1e-07 58.9 80 33.8
CsaV3_6G049690 Cucumis sativus L. HOM05D003712 ORTHO05D004368 4.6e-07 57.8 46 43.5
TWI18G1344 Tripterygium wilfordii HOM05D003712 ORTHO05D004368 1.0e-06 56.6 45 44.4
Nitab4.5_0001871g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.6e-06 53.9 84 26.2
Nitab4.5_0002956g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.6e-06 53.9 84 26.2


User provided reference genes

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