Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 1.3e-67 259.6 136 100.0
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 4.3e-58 228.0 129 90.7
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 7.3e-58 227.3 129 88.4
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 2.1e-57 225.7 129 88.4
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 3.6e-57 224.9 129 86.0
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 8.1e-57 223.8 129 87.6
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 1.8e-56 222.6 129 86.8
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 2.4e-56 222.2 129 86.8
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 2.4e-56 222.2 129 86.8
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 3.1e-56 221.9 129 86.0
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 3.1e-56 221.9 129 86.8
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 4.0e-56 221.5 129 86.8
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 4.0e-56 221.5 129 86.0
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 6.9e-56 220.7 129 86.8
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 9.0e-56 220.3 128 87.5
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 9.0e-56 220.3 128 86.7
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 1.2e-55 219.9 129 85.3
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 2.0e-55 219.2 129 85.3
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 7.6e-55 217.2 129 84.5
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 1.3e-54 216.5 126 86.5
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 6.4e-54 214.2 129 82.9
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 6.4e-54 214.2 126 85.7
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 2.4e-53 212.2 126 85.7
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 4.2e-53 211.5 126 81.7
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 4.2e-53 211.5 126 81.7
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 9.3e-53 210.3 126 82.5
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 1.2e-52 209.9 126 84.1
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 1.6e-52 209.5 126 83.3
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 2.1e-52 209.1 126 84.1
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 2.7e-52 208.8 126 84.1
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 4.6e-52 208.0 126 82.5
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 4.6e-52 208.0 130 81.5
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 1.0e-51 206.8 126 83.3
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 1.7e-51 206.1 128 78.1
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 1.7e-51 206.1 126 84.1
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 1.7e-51 206.1 126 81.7
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 2.3e-51 205.7 126 81.7
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 2.3e-51 205.7 129 79.1
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 3.0e-51 205.3 126 81.0
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 3.0e-51 205.3 129 79.1
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 3.9e-51 204.9 126 80.2
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 3.9e-51 204.9 129 80.6
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 3.9e-51 204.9 126 77.8
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 6.6e-51 204.1 126 79.4
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 8.7e-51 203.8 126 78.6
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 1.5e-50 203.0 135 80.0
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 1.5e-50 203.0 126 78.6
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 1.5e-50 203.0 126 78.6
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 1.5e-50 203.0 130 77.7
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 1.9e-50 202.6 126 81.7
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 3.3e-50 201.8 128 78.1
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 3.3e-50 201.8 128 78.1
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 5.6e-50 201.1 126 78.6
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 7.3e-50 200.7 126 77.0
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 7.3e-50 200.7 126 77.0
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 7.3e-50 200.7 126 78.6
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 9.6e-50 200.3 128 78.1
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 9.6e-50 200.3 128 78.1
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 1.3e-49 199.9 126 77.8
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 1.3e-49 199.9 126 77.8
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 1.6e-49 199.5 126 77.8
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 1.6e-49 199.5 126 77.8
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 1.6e-49 199.5 126 77.0
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 1.6e-49 199.5 126 77.0
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 1.6e-49 199.5 126 78.6
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 2.1e-49 199.1 126 77.0
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 2.1e-49 199.1 126 78.6
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 2.8e-49 198.7 121 81.0
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 2.8e-49 198.7 126 77.0
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 3.6e-49 198.4 126 77.8
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 3.6e-49 198.4 126 76.2
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 4.8e-49 198.0 126 77.0
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 4.8e-49 198.0 126 77.8
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 6.2e-49 197.6 123 79.7
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 6.2e-49 197.6 123 79.7
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 8.1e-49 197.2 126 77.8
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 2.4e-48 195.7 126 81.0
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 2.4e-48 195.7 126 77.8
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 3.1e-48 195.3 126 77.8
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 3.1e-48 195.3 126 75.4
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 3.1e-48 195.3 126 76.2
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 4.0e-48 194.9 126 74.6
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 5.3e-48 194.5 126 78.6
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 6.9e-48 194.1 127 78.7
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 1.5e-47 193.0 126 76.2
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 2.0e-47 192.6 126 78.6
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 5.8e-47 191.0 126 74.6
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 9.9e-47 190.3 126 73.0
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 1.7e-46 189.5 126 73.0
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 1.7e-46 189.5 126 74.6
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 3.8e-46 188.3 128 69.5
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 4.9e-46 188.0 126 72.2
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 1.9e-45 186.0 126 73.0
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 2.4e-45 185.7 126 70.6
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 5.4e-45 184.5 127 70.9
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 9.3e-45 183.7 150 64.0
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 1.6e-44 183.0 126 69.8
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 1.6e-44 183.0 128 71.9
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 2.7e-44 182.2 126 73.0
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 4.6e-44 181.4 143 65.0
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 1.0e-43 180.3 111 80.2
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 3.9e-43 178.3 162 59.9
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 3.9e-43 178.3 102 88.2
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 8.7e-43 177.2 103 87.4
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 1.1e-42 176.8 126 69.0
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 9.6e-42 173.7 126 66.7
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 9.6e-42 173.7 126 66.7
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 9.6e-42 173.7 126 66.7
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 2.8e-41 172.2 126 67.5
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 2.8e-41 172.2 126 67.5
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 1.4e-40 169.9 121 70.2
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 2.4e-40 169.1 126 65.9
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 4.0e-40 168.3 114 75.4
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 9.0e-40 167.2 95 90.5
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 2.6e-39 165.6 100 80.0
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 5.8e-39 164.5 128 60.9
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 1.3e-38 163.3 106 75.5
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 1.3e-38 163.3 106 75.5
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 2.2e-38 162.5 104 78.8
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 3.2e-37 158.7 92 87.0
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 4.2e-37 158.3 133 66.2
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 4.2e-37 158.3 128 59.4
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 1.6e-36 156.4 122 64.8
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 6.0e-36 154.5 107 71.0
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 1.8e-35 152.9 112 71.4
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 8.7e-35 150.6 126 57.9
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 7.4e-34 147.5 129 57.4
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 2.8e-33 145.6 169 52.7
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 6.2e-33 144.4 122 54.1
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 3.4e-31 138.7 88 81.8
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 4.5e-31 138.3 155 52.3
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 1.3e-30 136.7 80 87.5
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 6.5e-30 134.4 78 85.9
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 1.6e-28 129.8 124 55.6
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 3.9e-27 125.2 124 52.4
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 8.2e-25 117.5 77 71.4
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 1.4e-16 90.1 56 82.1
RcHm_v2.0_Chr1g0356881 Rosa chinensis HOM05D004637 ORTHO05D005320 2.4e-16 89.4 51 84.3
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 4.5e-15 85.1 48 85.4
COL.COLO4_10117 Corchorus olitorius HOM05D004637 ORTHO05D005320 2.5e-13 79.3 49 75.5
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 1.0e-11 73.9 87 43.7
BcaC01g06520 Brassica carinata HOM05D004637 ORTHO05D005320 6.7e-11 71.2 48 68.8
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 4.4e-10 68.6 99 37.4
BcaB04g17066 Brassica carinata HOM05D037786 ORTHO05D005320 5.3e-08 61.6 46 67.4
HPP92_014526 Vanilla planifolia HOM05D004637 ORTHO05D005320 9.1e-08 60.8 52 51.9
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 2.0e-07 59.7 102 31.4
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 2.0e-07 59.7 102 31.4


User provided reference genes

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