Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G3710 Salvia bowleyana HOM05D004587 ORTHO05D005512 4.6e-109 397.9 200 100.0
SGA_v2.0_scaffold108G30874 Striga asiatica HOM05D004587 ORTHO05D005512 4.8e-50 201.8 202 55.9
SGA_v2.0_scaffold195G40785 Striga asiatica HOM05D004587 ORTHO05D005512 8.3e-50 201.1 202 56.9
MSTRG.1101 Avicennia marina HOM05D004587 ORTHO05D005512 2.0e-48 196.4 201 55.2
MSTRG.25306 Avicennia marina HOM05D004587 ORTHO05D005512 1.5e-46 190.3 200 52.5
Migut.C00969 Erythranthe guttata HOM05D004587 ORTHO05D005512 1.6e-45 186.8 205 53.2
Solyc08g077040.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 2.3e-39 166.4 200 48.0
Oeu035388.1 Olea europaea HOM05D004587 ORTHO05D005512 2.9e-39 166.0 200 50.0
Sopen08g025620 Solanum pennellii HOM05D004587 ORTHO05D005512 5.0e-39 165.2 200 48.0
PGSC0003DMG400017533 Solanum tuberosum HOM05D004587 ORTHO05D005512 5.0e-39 165.2 201 48.8
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 6.1e-37 158.3 184 47.8
Nitab4.5_0001285g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 2.3e-36 156.4 200 45.5
Dinv25204 Davidia involucrata HOM05D004587 ORTHO05D005512 9.8e-35 151.0 200 44.5
COL.COLO4_17061 Corchorus olitorius HOM05D004587 ORTHO05D005512 4.1e-33 145.6 202 43.1
Sabra03G0060300 Salix brachista HOM05D004587 ORTHO05D005512 5.4e-33 145.2 248 39.5
Dinv28943 Davidia involucrata HOM05D004587 ORTHO05D005512 1.2e-32 144.1 200 44.0
Potri.001G143600 Populus trichocarpa HOM05D004587 ORTHO05D005512 1.2e-32 144.1 206 42.7
Solyc06g061140.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 2.7e-32 142.9 200 44.0
Hma1.2p1_0991F.1_g245040 Hydrangea macrophylla HOM05D004587 ORTHO05D005512 6.0e-32 141.7 197 43.7
PGR042G1036 Punica granatum HOM05D004587 ORTHO05D005512 6.0e-32 141.7 200 42.0
Peaxi162Scf00460g00412 Petunia axillaris HOM05D004587 ORTHO05D005512 1.3e-31 140.6 202 45.5
Potri.003G090600 Populus trichocarpa HOM05D004587 ORTHO05D005512 1.3e-31 140.6 202 42.6
PGSC0003DMG402002106 Solanum tuberosum HOM05D004587 ORTHO05D005512 2.3e-31 139.8 200 43.0
Gohir.D08G177900 Gossypium hirsutum HOM05D004587 ORTHO05D005512 3.0e-31 139.4 201 42.3
Actinidia25956 Actinidia chinensis HOM05D004587 ORTHO05D005512 3.9e-31 139.0 201 42.3
Gorai.004G186100 Gossypium raimondii HOM05D004587 ORTHO05D005512 3.9e-31 139.0 201 42.3
Cc08_g02530 Coffea canephora HOM05D004587 ORTHO05D005512 8.6e-31 137.9 200 41.5
GSVIVG01013197001 Vitis vinifera HOM05D004587 ORTHO05D005512 1.1e-30 137.5 200 42.5
Sopen06g021340 Solanum pennellii HOM05D004587 ORTHO05D005512 1.5e-30 137.1 200 42.5
CiPaw.11G092100 Carya illinoinensis HOM05D004587 ORTHO05D005512 1.9e-30 136.7 200 42.0
Nitab4.5_0006066g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.9e-30 136.7 200 42.0
CiPaw.12G062400 Carya illinoinensis HOM05D004587 ORTHO05D005512 5.6e-30 135.2 194 43.3
Sc22g0001460 Simmondsia chinensis HOM05D004587 ORTHO05D005512 7.3e-30 134.8 202 42.6
Gohir.A08G157600 Gossypium hirsutum HOM05D004587 ORTHO05D005512 9.5e-30 134.4 201 41.3
Thecc.03G229700 Theobroma cacao HOM05D004587 ORTHO05D005512 1.6e-29 133.7 202 41.6
TWI81G0220 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 1.6e-29 133.7 202 41.6
Peaxi162Scf00615g00515 Petunia axillaris HOM05D004587 ORTHO05D005512 2.1e-29 133.3 204 43.6
RcHm_v2.0_Chr7g0209351 Rosa chinensis HOM05D004587 ORTHO05D005512 2.1e-29 133.3 200 42.5
MELO3C003396.2 Cucumis melo HOM05D004587 ORTHO05D005512 3.6e-29 132.5 198 39.4
Prupe.5G039100 Prunus persica HOM05D004587 ORTHO05D005512 1.1e-28 131.0 202 42.6
CSS0021945 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 1.4e-28 130.6 202 42.1
CSS0032807 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 1.4e-28 130.6 202 42.1
Nitab4.5_0000256g0420 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.8e-28 130.2 200 40.5
Atru.chr6.1737 Acer truncatum HOM05D004587 ORTHO05D005512 2.3e-28 129.8 200 39.5
CsaV3_3G049300 Cucumis sativus L. HOM05D004587 ORTHO05D005512 2.3e-28 129.8 196 38.3
Rhsim07G0126100 Rhododendron simsii HOM05D004587 ORTHO05D005512 2.3e-28 129.8 201 41.8
Actinidia14814 Actinidia chinensis HOM05D004587 ORTHO05D005512 3.1e-28 129.4 202 40.1
Eucgr.E00288 Eucalyptus grandis HOM05D004587 ORTHO05D005512 3.1e-28 129.4 210 40.5
FvH4_5g21840 Fragaria vesca HOM05D004587 ORTHO05D005512 3.1e-28 129.4 200 41.5
FAN08G2253 Fragaria x ananassa HOM05D004587 ORTHO05D005512 3.1e-28 129.4 200 42.0
Duzib068G1306 Durio zibethinus HOM05D004587 ORTHO05D005512 4.0e-28 129.0 200 40.0
FAN13G1185 Fragaria x ananassa HOM05D004587 ORTHO05D005512 4.0e-28 129.0 200 41.5
FAN18G4447 Fragaria x ananassa HOM05D004587 ORTHO05D005512 4.0e-28 129.0 200 41.5
Sabra01G0112000 Salix brachista HOM05D004587 ORTHO05D005512 4.0e-28 129.0 269 34.2
ClCG09G012070 Citrullus lanatus HOM05D004587 ORTHO05D005512 5.2e-28 128.6 198 38.4
vmacro14165 Vaccinium macrocarpon HOM05D004587 ORTHO05D005512 5.2e-28 128.6 197 41.6
FAN04G0466 Fragaria x ananassa HOM05D004587 ORTHO05D005512 8.9e-28 127.9 200 40.5
Sed0004713 Sechium edule HOM05D004587 ORTHO05D005512 8.9e-28 127.9 198 38.9
Hund14406 Selenicereus undatus HOM05D004587 ORTHO05D005512 8.9e-28 127.9 200 42.0
QL12p005998 Quercus lobata HOM05D004587 ORTHO05D005512 2.0e-27 126.7 224 38.8
Sed0024230 Sechium edule HOM05D004587 ORTHO05D005512 2.6e-27 126.3 197 37.6
TWI60G1364 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 4.4e-27 125.6 202 40.6
CANSAT21G0306 Cannabis sativa HOM05D004587 ORTHO05D005512 5.8e-27 125.2 198 38.4
DCAR_008278 Daucus carota HOM05D004587 ORTHO05D005512 5.8e-27 125.2 203 39.9
Actinidia09217 Actinidia chinensis HOM05D004587 ORTHO05D005512 7.5e-27 124.8 202 40.1
Manes.15G168700 Manihot esculenta HOM05D004587 ORTHO05D005512 2.2e-26 123.2 208 37.5
MD06G1032800 Malus domestica HOM05D004587 ORTHO05D005512 2.9e-26 122.9 202 41.1
arahy.Tifrunner.gnm1.ann1.QWZQ79 Arachis hypogaea HOM05D004587 ORTHO05D005512 6.4e-26 121.7 196 38.3
arahy.Tifrunner.gnm1.ann1.VNVR7L Arachis hypogaea HOM05D004587 ORTHO05D005512 6.4e-26 121.7 196 38.3
TAR375G0250 Trochodendron aralioides HOM05D004587 ORTHO05D005512 8.3e-26 121.3 149 47.0
Lj2C242G4 Lonicera japonica HOM05D004587 ORTHO05D005512 1.4e-25 120.6 206 39.8
CAN.G201.22 Capsicum annuum HOM05D004587 ORTHO05D005512 2.4e-25 119.8 200 38.0
Zm00001eb208820 Zea mays HOM05D004587 ORTHO05D005512 3.2e-25 119.4 207 40.6
Manes.17G011700 Manihot esculenta HOM05D004587 ORTHO05D005512 7.0e-25 118.2 207 40.6
Psat2g173440 Pisum sativum HOM05D004587 ORTHO05D005512 1.2e-24 117.5 200 37.0
TAR629G0873 Trochodendron aralioides HOM05D004587 ORTHO05D005512 1.2e-24 117.5 200 38.5
AUR62007272 Chenopodium quinoa HOM05D004587 ORTHO05D005512 2.7e-24 116.3 200 36.5
THA.LOC104812836 Tarenaya hassleriana HOM05D004587 ORTHO05D005512 2.7e-24 116.3 202 38.1
AUR62018727 Chenopodium quinoa HOM05D004587 ORTHO05D005512 3.5e-24 115.9 200 37.0
ECA240G1087 Erigeron canadensis HOM05D004587 ORTHO05D005512 6.0e-24 115.2 204 36.8
BolC1t01142H Brassica oleracea HOM05D004587 ORTHO05D005512 1.0e-23 114.4 204 36.8
Phvul.002G006600 Phaseolus vulgaris HOM05D004587 ORTHO05D005512 1.7e-23 113.6 197 40.6
BcaC09g51581 Brassica carinata HOM05D004587 ORTHO05D005512 3.0e-23 112.8 204 36.3
Ah.07g200250 Amaranthus hybridus HOM05D004587 ORTHO05D005512 3.9e-23 112.5 201 37.3
Duzib205G0684 Durio zibethinus HOM05D004587 ORTHO05D005512 3.9e-23 112.5 202 36.1
C01p11800 Brassica napus HOM05D004587 ORTHO05D005512 5.0e-23 112.1 204 36.3
Carub.0007s2338 Capsella rubella HOM05D004587 ORTHO05D005512 6.6e-23 111.7 202 37.1
Sp7g16150 Schrenkiella parvula HOM05D004587 ORTHO05D005512 6.6e-23 111.7 202 36.6
EL10Ac5g12139 Beta vulgaris HOM05D004587 ORTHO05D005512 1.1e-22 110.9 200 38.5
Lj8A293T23 Lonicera japonica HOM05D004587 ORTHO05D005512 1.9e-22 110.2 225 32.4
TPR.G7834 Trifolium pratense HOM05D004587 ORTHO05D005512 1.9e-22 110.2 204 37.7
AT4G17960 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 3.3e-22 109.4 198 36.4
Nitab4.5_0001276g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 4.3e-22 109.0 80 63.8
Lalb_Chr16g0379161 Lupinus albus HOM05D004587 ORTHO05D005512 5.6e-22 108.6 192 37.5
CARHR224700 Cardamine hirsuta HOM05D004587 ORTHO05D005512 7.3e-22 108.2 198 36.4
Thhalv10027517m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 7.3e-22 108.2 205 36.6
Lj2g0006519 Lotus japonicus HOM05D004587 ORTHO05D005512 7.3e-22 108.2 197 35.5
AL7G36550 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 2.1e-21 106.7 202 35.6
CAN.G1659.7 Capsicum annuum HOM05D004587 ORTHO05D005512 2.8e-21 106.3 117 47.0
A01p10000 Brassica napus HOM05D004587 ORTHO05D005512 3.6e-21 105.9 196 35.2
MD16G1276500 Malus domestica HOM05D004587 ORTHO05D005512 4.7e-21 105.5 180 40.6
PSO063G5829 Papaver somniferum HOM05D004587 ORTHO05D005512 6.2e-21 105.1 230 35.2
BcaNung00040 Brassica carinata HOM05D004587 ORTHO05D005512 8.1e-21 104.8 210 36.2
Nn6g33612 Nelumbo nucifera HOM05D004587 ORTHO05D005512 1.1e-20 104.4 200 37.0
PSO782G4837 Papaver somniferum HOM05D004587 ORTHO05D005512 1.1e-20 104.4 231 35.1
BraA01t00944Z Brassica rapa HOM05D004587 ORTHO05D005512 1.8e-20 103.6 196 34.7
HanXRQChr02g0043541 Helianthus annuus HOM05D004587 ORTHO05D005512 1.8e-20 103.6 204 36.8
Os02g0128100 Oryza sativa ssp. japonica HOM05D004587 ORTHO05D005512 5.2e-20 102.1 209 34.4
Ciclev10033624m.g Citrus clementina HOM05D004587 ORTHO05D005512 1.5e-19 100.5 79 60.8
Lsat_1_v5_gn_6_64781 Lactuca sativa HOM05D004587 ORTHO05D005512 3.4e-19 99.4 200 37.5
SHI31713 Sapria himalayana HOM05D000449 ORTHO05D000360 3.4e-19 99.4 194 33.5
Ah.12g054920 Amaranthus hybridus HOM05D004587 ORTHO05D005512 7.5e-19 98.2 150 40.0
HPP92_001583 Vanilla planifolia HOM05D004587 ORTHO05D005512 1.3e-18 97.4 200 34.5
HPP92_001567 Vanilla planifolia HOM05D004587 ORTHO05D005512 1.7e-18 97.1 200 34.0
HPP92_001722 Vanilla planifolia HOM05D004587 ORTHO05D005512 1.7e-18 97.1 200 34.0
VMungo1215G2797 Vigna mungo HOM05D000740 ORTHO05D005071 3.7e-18 95.9 192 37.5
Glyma.01G199100 Glycine max HOM05D004587 ORTHO05D005512 8.3e-18 94.7 200 36.5
Zm00001eb231030 Zea mays HOM05D004587 ORTHO05D005512 8.3e-18 94.7 206 34.5
ECA233G1850 Erigeron canadensis HOM05D004587 ORTHO05D005512 5.4e-17 92.0 143 39.9
Aqoxy3G02401 Aquilegia oxysepala HOM05D004587 ORTHO05D005512 9.2e-17 91.3 203 33.5
Aa31LG6G710 Aethionema arabicum HOM05D004587 ORTHO05D005512 1.0e-15 87.8 196 32.1
ATR0049G023 Amborella trichopoda HOM05D004587 ORTHO05D005512 8.6e-15 84.7 201 31.3
Haze_08256 Corylus avellana HOM05D004587 ORTHO05D005512 8.6e-15 84.7 79 57.0
Carub.0008s0129 Capsella rubella HOM05D004587 ORTHO05D005512 2.5e-14 83.2 204 34.3
CARHR174890 Cardamine hirsuta HOM05D004587 ORTHO05D005512 4.3e-14 82.4 194 35.1
BcaC06g31462 Brassica carinata HOM05D004587 ORTHO05D005512 9.5e-14 81.3 195 33.3
CDE12G0528 Ceratophyllum demersum HOM05D004587 ORTHO05D005512 9.5e-14 81.3 197 32.0
C02p47640 Brassica napus HOM05D004587 ORTHO05D005512 1.6e-13 80.5 203 34.0
BolC2t10800H Brassica oleracea HOM05D004587 ORTHO05D005512 1.6e-13 80.5 203 34.0
A02p30170 Brassica napus HOM05D004587 ORTHO05D005512 2.1e-13 80.1 193 34.2
Sp2g11450 Schrenkiella parvula HOM05D004587 ORTHO05D005512 2.1e-13 80.1 203 33.0
BraA02t08033Z Brassica rapa HOM05D004587 ORTHO05D005512 3.6e-13 79.3 193 33.7
Aa31LG9G6270 Aethionema arabicum HOM05D004587 ORTHO05D005512 6.2e-13 78.6 189 33.9
Thhalv10001062m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 6.2e-13 78.6 192 33.3
AL8G11720 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 8.1e-13 78.2 195 31.8
BcaC03g16867 Brassica carinata HOM05D004587 ORTHO05D005512 1.4e-12 77.4 137 39.4
BolC7t43533H Brassica oleracea HOM05D004587 ORTHO05D005512 1.4e-12 77.4 190 33.2
Medtr5g014320 Medicago truncatula HOM05D004587 ORTHO05D005512 1.4e-12 77.4 211 31.8
AT5G46620 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 1.8e-12 77.0 136 38.2
BraA06t27449Z Brassica rapa HOM05D004587 ORTHO05D005512 2.4e-12 76.6 188 33.0
AL7G30750 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 4.0e-12 75.9 78 48.7
BcaC06g34365 Brassica carinata HOM05D004587 ORTHO05D005512 5.2e-12 75.5 190 32.6
C07p29850 Brassica napus HOM05D004587 ORTHO05D005512 5.2e-12 75.5 190 32.6
Cpa.g.sc90.47 Carica papaya HOM05D004587 ORTHO05D005512 5.2e-12 75.5 72 55.6
SEGI_38344 Sequoiadendron giganteum HOM05D004587 ORTHO05D005512 8.9e-12 74.7 77 48.1
A06p45800 Brassica napus HOM05D004587 ORTHO05D005512 1.2e-11 74.3 187 33.2
Glyma.11G042700 Glycine max HOM05D004587 ORTHO05D005512 1.7e-10 70.5 202 31.2
Nitab4.5_0001276g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.1e-09 67.8 84 45.2
Mapoly0066s0035 Marchantia polymorpha HOM05D004587 ORTHO05D005512 5.4e-09 65.5 194 29.4
Sabra19G0094000 Salix brachista HOM05D004587 ORTHO05D005512 2.1e-08 63.5 42 69.0
Actinidia03381 Actinidia chinensis HOM05D004587 ORTHO05D005512 2.7e-08 63.2 82 45.1
Cpa.g.sc90.49 Carica papaya HOM05D004587 ORTHO05D005512 1.9e-06 57.0 88 43.2


User provided reference genes

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