Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 5.3e-131 471.1 249 100.0
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 8.9e-94 347.4 241 74.3
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 9.8e-93 344.0 240 72.1
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 1.3e-89 333.6 234 73.5
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 1.1e-88 330.5 239 67.8
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 9.5e-88 327.4 237 68.8
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 1.6e-87 326.6 237 68.8
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 1.6e-87 326.6 237 68.8
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 5.8e-85 318.2 239 66.1
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 7.5e-85 317.8 237 64.1
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 7.5e-85 317.8 269 60.6
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 1.2e-82 310.5 235 63.8
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 8.6e-81 304.3 206 74.8
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 2.5e-80 302.8 240 63.3
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 4.3e-80 302.0 241 63.1
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 4.3e-80 302.0 237 62.4
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 4.3e-80 302.0 238 62.2
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 5.6e-80 301.6 237 62.0
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 9.5e-80 300.8 237 65.8
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 1.2e-79 300.4 241 63.1
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 1.2e-79 300.4 242 62.8
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 2.1e-79 299.7 239 61.9
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 8.1e-79 297.7 238 63.9
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 1.8e-78 296.6 237 63.3
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 6.8e-78 294.7 241 58.5
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 1.2e-77 293.9 236 62.7
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 2.0e-77 293.1 239 63.2
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 2.0e-77 293.1 239 61.1
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 3.4e-77 292.4 239 60.3
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 4.4e-77 292.0 237 60.3
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 4.4e-77 292.0 237 60.8
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 7.6e-77 291.2 246 58.9
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 9.9e-77 290.8 240 60.0
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 1.3e-76 290.4 239 60.7
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 4.9e-76 288.5 242 56.2
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 4.9e-76 288.5 239 60.7
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 5.4e-75 285.0 239 58.2
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 9.2e-75 284.3 242 57.4
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 2.7e-74 282.7 249 58.2
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 6.0e-74 281.6 240 59.2
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 6.0e-74 281.6 237 59.9
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 7.8e-74 281.2 239 58.2
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 1.0e-73 280.8 239 60.7
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 3.9e-73 278.9 245 58.4
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 5.6e-72 275.0 242 56.6
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 5.6e-72 275.0 217 60.8
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 7.3e-72 274.6 262 53.8
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 2.1e-71 273.1 237 59.1
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 1.8e-70 270.0 198 65.7
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 6.9e-70 268.1 195 67.2
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 9.0e-70 267.7 237 58.6
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 4.4e-69 265.4 239 53.6
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 1.3e-68 263.8 206 62.6
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 1.9e-67 260.0 230 53.5
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 2.7e-66 256.1 240 57.5
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 6.0e-66 255.0 196 60.2
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 1.0e-65 254.2 239 52.7
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 1.7e-65 253.4 206 62.1
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 5.1e-65 251.9 239 53.6
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 1.5e-64 250.4 241 53.9
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 3.3e-64 249.2 197 58.9
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 3.3e-64 249.2 242 50.4
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 7.3e-64 248.1 241 53.1
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 2.1e-63 246.5 241 52.7
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 2.1e-63 246.5 241 52.7
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 2.1e-63 246.5 201 57.7
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 3.6e-63 245.7 241 52.3
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 3.6e-63 245.7 241 52.3
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 3.6e-63 245.7 238 56.3
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 6.2e-63 245.0 209 59.3
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 4.0e-62 242.3 241 51.5
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 5.3e-62 241.9 185 64.3
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 6.9e-62 241.5 224 54.5
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 1.2e-61 240.7 241 51.9
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 1.2e-61 240.7 240 51.2
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 7.6e-61 238.0 218 50.0
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 2.2e-60 236.5 241 50.2
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 2.9e-60 236.1 241 48.5
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 3.8e-60 235.7 229 49.3
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 3.8e-60 235.7 236 55.9
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 8.4e-60 234.6 242 50.4
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 9.3e-59 231.1 255 47.8
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 2.7e-58 229.6 237 47.7
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 3.0e-57 226.1 237 48.1
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 3.9e-57 225.7 198 54.5
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 5.6e-56 221.9 293 42.3
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 5.3e-54 215.3 246 49.6
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 6.4e-52 208.4 241 46.1
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 1.9e-51 206.8 218 51.8
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 1.9e-51 206.8 206 53.9
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 1.6e-50 203.8 238 44.5
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 3.5e-50 202.6 234 46.6
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 2.3e-49 199.9 236 45.8
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 2.3e-49 199.9 239 42.7
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 8.7e-49 198.0 237 43.9
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 2.8e-47 193.0 238 40.8
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 2.0e-45 186.8 244 40.2
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 2.0e-45 186.8 196 50.5
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 7.6e-45 184.9 184 52.2
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 2.9e-44 183.0 239 40.2
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 2.1e-42 176.8 235 37.4
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 6.7e-41 171.8 269 40.9
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 2.4e-38 163.3 167 49.7
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 6.9e-38 161.8 234 41.9
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 6.9e-38 161.8 239 35.1
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 6.9e-38 161.8 236 37.7
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 1.2e-37 161.0 238 37.4
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 2.0e-37 160.2 236 39.8
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 7.6e-37 158.3 237 38.8
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 9.4e-35 151.4 110 65.5
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 2.3e-33 146.7 106 66.0
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 1.5e-32 144.1 157 47.1
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 4.3e-32 142.5 111 62.2
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 2.2e-31 140.2 109 60.6
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 6.3e-31 138.7 205 40.5
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 2.2e-28 130.2 151 39.7
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 1.9e-27 127.1 104 58.7
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 2.3e-25 120.2 237 33.3
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 7.4e-24 115.2 217 35.5
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 4.8e-23 112.5 104 50.0
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 3.1e-22 109.8 207 33.8
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 9.1e-22 108.2 103 49.5
TPR.G31416 Trifolium pratense HOM05D005414 ORTHO05D006844 1.7e-20 104.0 106 50.9
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 2.9e-20 103.2 105 51.4
Mapoly0067s0091 Marchantia polymorpha HOM05D005414 ORTHO05D006844 1.2e-18 97.8 106 42.5
Sed0017348 Sechium edule HOM05D005414 ORTHO05D006844 2.0e-16 90.5 152 39.5
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 2.2e-15 87.0 126 37.3
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 4.8e-15 85.9 120 38.3
Lsat_1_v5_gn_9_72760 Lactuca sativa HOM05D005414 ORTHO05D006844 1.8e-14 84.0 224 26.3
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 3.8e-12 76.3 69 46.4
ECA233G0443 Erigeron canadensis HOM05D005414 ORTHO05D006844 2.5e-11 73.6 69 40.6
AUR62034915 Chenopodium quinoa HOM05D005414 ORTHO05D006844 4.2e-11 72.8 170 33.5
CAN.G564.24 Capsicum annuum HOM05D005414 ORTHO05D006844 2.7e-10 70.1 112 38.4
Lsat_1_v5_gn_1_83821 Lactuca sativa HOM05D005414 ORTHO05D006844 2.0e-08 63.9 110 36.4
HanXRQChr01g0001821 Helianthus annuus HOM05D005414 ORTHO05D006844 2.6e-08 63.5 122 33.6


User provided reference genes

Program Settings