Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G3619 Salvia bowleyana HOM05D006150 ORTHO05D007745 4.0e-181 637.9 304 100.0
MSTRG.6640 Avicennia marina HOM05D006150 ORTHO05D007745 1.8e-149 532.7 280 87.5
Lj8A277T42 Lonicera japonica HOM05D006150 ORTHO05D007745 3.6e-137 491.9 284 79.6
Cc08_g11330 Coffea canephora HOM05D006150 ORTHO05D007745 1.5e-135 486.5 284 79.6
COL.COLO4_07285 Corchorus olitorius HOM05D006150 ORTHO05D007745 3.3e-135 485.3 308 76.0
Solyc08g077840.3 Solanum lycopersicum HOM05D006150 ORTHO05D007745 9.7e-135 483.8 285 77.5
Sopen08g026350 Solanum pennellii HOM05D006150 ORTHO05D007745 1.3e-134 483.4 285 77.5
Potri.003G083600 Populus trichocarpa HOM05D006150 ORTHO05D007745 1.7e-134 483.0 279 81.0
Hma1.2p1_0570F.1_g180430 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 2.8e-134 482.3 284 77.5
unitig_746.g26644 Utricularia gibba HOM05D006150 ORTHO05D007745 3.7e-134 481.9 277 79.8
Cfa012327 Carpinus fangiana HOM05D006150 ORTHO05D007745 4.8e-134 481.5 298 75.2
Duzib084G0008 Durio zibethinus HOM05D006150 ORTHO05D007745 4.8e-134 481.5 277 80.5
PGSC0003DMG400026243 Solanum tuberosum HOM05D006150 ORTHO05D007745 6.3e-134 481.1 285 77.2
Atru.chr9.1206 Acer truncatum HOM05D006150 ORTHO05D007745 1.4e-133 479.9 281 78.6
Gohir.A12G212700 Gossypium hirsutum HOM05D006150 ORTHO05D007745 1.8e-133 479.6 278 79.5
Gorai.008G230800 Gossypium raimondii HOM05D006150 ORTHO05D007745 2.4e-133 479.2 278 79.1
TAR636G1440 Trochodendron aralioides HOM05D006150 ORTHO05D007745 7.0e-133 477.6 278 79.9
CSS0019555 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 9.1e-133 477.2 286 76.6
CARHR223610 Cardamine hirsuta HOM05D006150 ORTHO05D007745 1.5e-132 476.5 287 77.0
Gohir.D12G215200 Gossypium hirsutum HOM05D006150 ORTHO05D007745 2.0e-132 476.1 278 78.4
Thecc.03G240100 Theobroma cacao HOM05D006150 ORTHO05D007745 2.0e-132 476.1 277 79.4
Rhsim07G0136400 Rhododendron simsii HOM05D006150 ORTHO05D007745 5.9e-132 474.6 284 76.1
Ciclev10021365m.g Citrus clementina HOM05D006150 ORTHO05D007745 1.0e-131 473.8 297 75.1
DCAR_008330 Daucus carota HOM05D006150 ORTHO05D007745 1.0e-131 473.8 282 77.3
BraA03t14117Z Brassica rapa HOM05D006150 ORTHO05D007745 1.3e-131 473.4 285 76.8
ECA234G2169 Erigeron canadensis HOM05D006150 ORTHO05D007745 2.2e-131 472.6 286 77.3
CAN.G572.11 Capsicum annuum HOM05D006150 ORTHO05D007745 3.8e-131 471.9 280 78.2
Eucgr.D02133 Eucalyptus grandis HOM05D006150 ORTHO05D007745 5.0e-131 471.5 306 72.5
CANSAT21G0710 Cannabis sativa HOM05D006150 ORTHO05D007745 6.5e-131 471.1 286 76.2
AT4G17050 Arabidopsis thaliana HOM05D006150 ORTHO05D007745 8.5e-131 470.7 284 76.4
THA.LOC104807929 Tarenaya hassleriana HOM05D006150 ORTHO05D007745 8.5e-131 470.7 286 75.9
BcaNung04656 Brassica carinata HOM05D006150 ORTHO05D007745 1.9e-130 469.5 285 75.4
HanXRQChr17g0534011 Helianthus annuus HOM05D006150 ORTHO05D007745 3.2e-130 468.8 287 76.3
AL7G37660 Arabidopsis lyrata HOM05D006150 ORTHO05D007745 5.5e-130 468.0 284 76.4
Nn6g33757 Nelumbo nucifera HOM05D006150 ORTHO05D007745 5.5e-130 468.0 275 78.9
A03p50280 Brassica napus HOM05D006150 ORTHO05D007745 9.4e-130 467.2 285 76.5
BolC1t02493H Brassica oleracea HOM05D006150 ORTHO05D007745 9.4e-130 467.2 282 77.0
Carub.0007s2437 Capsella rubella HOM05D006150 ORTHO05D007745 1.6e-129 466.5 284 76.1
C07p48520 Brassica napus HOM05D006150 ORTHO05D007745 2.7e-129 465.7 283 76.0
BolC7t45360H Brassica oleracea HOM05D006150 ORTHO05D007745 2.7e-129 465.7 283 76.0
Manes.01G089000 Manihot esculenta HOM05D006150 ORTHO05D007745 3.6e-129 465.3 276 78.3
Sp7g17140 Schrenkiella parvula HOM05D006150 ORTHO05D007745 3.6e-129 465.3 285 75.1
MD04G1055500 Malus domestica HOM05D006150 ORTHO05D007745 4.7e-129 464.9 284 76.1
EL10Ac5g12270 Beta vulgaris HOM05D006150 ORTHO05D007745 6.1e-129 464.5 304 72.4
FvH4_5g20400 Fragaria vesca HOM05D006150 ORTHO05D007745 6.1e-129 464.5 285 75.8
C07p48460 Brassica napus HOM05D006150 ORTHO05D007745 8.0e-129 464.2 283 76.3
RcHm_v2.0_Chr7g0205681 Rosa chinensis HOM05D006150 ORTHO05D007745 8.0e-129 464.2 285 76.5
MBI04_g13858_MAGBIO Magnolia biondii HOM05D006150 ORTHO05D007745 3.0e-128 462.2 276 77.2
Glyma.05G066500 Glycine max HOM05D006150 ORTHO05D007745 3.9e-128 461.8 279 74.6
Haze_08363 Corylus avellana HOM05D006150 ORTHO05D007745 5.2e-128 461.5 323 68.7
FAN04G1813 Fragaria x ananassa HOM05D006150 ORTHO05D007745 5.2e-128 461.5 285 76.1
BcaNung00130 Brassica carinata HOM05D006150 ORTHO05D007745 1.1e-127 460.3 283 74.6
BraA01t01953Z Brassica rapa HOM05D006150 ORTHO05D007745 1.1e-127 460.3 285 74.4
CiPaw.11G072300 Carya illinoinensis HOM05D006150 ORTHO05D007745 1.1e-127 460.3 285 74.4
TWI60G0542 Tripterygium wilfordii HOM05D006150 ORTHO05D007745 1.5e-127 459.9 276 76.4
BcaC06g33538 Brassica carinata HOM05D006150 ORTHO05D007745 2.6e-127 459.1 283 75.3
CsaV3_3G004750 Cucumis sativus L. HOM05D006150 ORTHO05D007745 4.4e-127 458.4 291 73.2
Sed0022790 Sechium edule HOM05D006150 ORTHO05D007745 4.4e-127 458.4 281 75.1
Glyma.17G148400 Glycine max HOM05D006150 ORTHO05D007745 5.7e-127 458.0 279 73.8
Ah.12g053980 Amaranthus hybridus HOM05D006150 ORTHO05D007745 7.4e-127 457.6 300 71.7
ClCG10G005070 Citrullus lanatus HOM05D006150 ORTHO05D007745 2.2e-126 456.1 282 74.5
C07p48390 Brassica napus HOM05D006150 ORTHO05D007745 4.8e-126 454.9 283 75.6
PGR031G0533 Punica granatum HOM05D006150 ORTHO05D007745 4.8e-126 454.9 259 79.5
PSO732G0290 Papaver somniferum HOM05D006150 ORTHO05D007745 8.2e-126 454.1 291 73.5
FAN08G0760 Fragaria x ananassa HOM05D006150 ORTHO05D007745 1.4e-125 453.4 279 76.0
Phvul.003G225600 Phaseolus vulgaris HOM05D006150 ORTHO05D007745 1.8e-125 453.0 278 73.0
PSO675G6476 Papaver somniferum HOM05D006150 ORTHO05D007745 2.4e-125 452.6 278 75.5
arahy.Tifrunner.gnm1.ann1.IPM3U6 Arachis hypogaea HOM05D006150 ORTHO05D007745 4.1e-125 451.8 275 75.3
VMungo0251G1767 Vigna mungo HOM05D006150 ORTHO05D007745 5.3e-125 451.4 281 72.2
Os07g0495000 Oryza sativa ssp. japonica HOM05D006150 ORTHO05D007745 2.6e-124 449.1 299 71.6
Nitab4.5_0000500g0240 Nicotiana tabacum HOM05D006150 ORTHO05D007745 5.9e-124 448.0 289 73.7
Lalb_Chr09g0329771 Lupinus albus HOM05D006150 ORTHO05D007745 1.7e-123 446.4 278 74.1
Ca_22017_v3 Cicer arietinum L. HOM05D006150 ORTHO05D007745 2.9e-123 445.7 283 73.5
Nitab4.5_0009451g0030 Nicotiana tabacum HOM05D006150 ORTHO05D007745 1.5e-122 443.4 291 72.2
arahy.Tifrunner.gnm1.ann1.YY6LCE Arachis hypogaea HOM05D006150 ORTHO05D007745 2.5e-122 442.6 275 74.9
Lj4g0002003 Lotus japonicus HOM05D006150 ORTHO05D007745 2.5e-122 442.6 283 72.8
TPR.G25747 Trifolium pratense HOM05D006150 ORTHO05D007745 9.4e-122 440.7 280 72.5
ATR0665G013 Amborella trichopoda HOM05D006150 ORTHO05D007745 2.1e-121 439.5 277 74.4
Medtr4g099290 Medicago truncatula HOM05D006150 ORTHO05D007745 6.1e-121 438.0 278 72.3
Aqoxy5G02622 Aquilegia oxysepala HOM05D006150 ORTHO05D007745 8.0e-121 437.6 292 69.5
PSO732G0039 Papaver somniferum HOM05D006150 ORTHO05D007745 1.0e-120 437.2 258 76.7
Zm00001eb322060 Zea mays HOM05D006150 ORTHO05D007745 1.0e-120 437.2 278 73.4
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 2.3e-120 436.0 284 71.5
A01p20260 Brassica napus HOM05D006150 ORTHO05D007745 8.8e-120 434.1 272 73.9
QL12p008732 Quercus lobata HOM05D006150 ORTHO05D007745 9.7e-119 430.6 392 56.6
Peaxi162Scf00301g00519 Petunia axillaris HOM05D006150 ORTHO05D007745 1.3e-115 420.2 285 69.8
HPP92_025744 Vanilla planifolia HOM05D006150 ORTHO05D007745 2.2e-115 419.5 277 73.3
Thhalv10026866m.g Eutrema salsugineum HOM05D006150 ORTHO05D007745 4.7e-113 411.8 297 68.7
Dinv28876 Davidia involucrata HOM05D006150 ORTHO05D007745 2.0e-111 406.4 245 78.0
BcaC09g50439 Brassica carinata HOM05D006150 ORTHO05D007745 2.6e-111 406.0 283 68.9
C01p25410 Brassica napus HOM05D006150 ORTHO05D007745 2.6e-111 406.0 283 68.9
Psat4g076080 Pisum sativum HOM05D006150 ORTHO05D007745 5.4e-109 398.3 263 70.7
Aa31LG2G13130 Aethionema arabicum HOM05D006150 ORTHO05D007745 1.6e-108 396.7 308 63.3
SEGI_33649 Sequoiadendron giganteum HOM05D006150 ORTHO05D007745 1.0e-107 394.0 273 69.2
Actinidia02195 Actinidia chinensis HOM05D006150 ORTHO05D007745 1.3e-107 393.7 249 72.7
Oeu012348.1 Olea europaea HOM05D006150 ORTHO05D007745 7.2e-106 387.9 210 87.1
vmacro00832 Vaccinium macrocarpon HOM05D006150 ORTHO05D007745 2.1e-105 386.3 295 64.1
Sc01g0007980 Simmondsia chinensis HOM05D006150 ORTHO05D007745 1.8e-104 383.3 266 68.8
SGA_v2.0_scaffold181G39680 Striga asiatica HOM05D006150 ORTHO05D007745 1.1e-101 374.0 242 76.9
Prupe.5G055300 Prunus persica HOM05D006150 ORTHO05D007745 3.2e-101 372.5 211 82.0
Pp3c9_12580 Physcomitrium patens HOM05D006150 ORTHO05D007745 1.9e-98 363.2 261 66.3
AagrBONN_evm.TU.Sc2ySwM_228.2274 Anthoceros agrestis HOM05D006150 ORTHO05D007745 2.8e-97 359.4 251 67.3
Mapoly0072s0097 Marchantia polymorpha HOM05D006150 ORTHO05D007745 4.0e-96 355.5 264 62.1
Lsat_1_v5_gn_3_15361 Lactuca sativa HOM05D006150 ORTHO05D007745 1.1e-93 347.4 247 69.2
GSVIVG01003685001 Vitis vinifera HOM05D006150 ORTHO05D007745 1.9e-93 346.7 284 60.9
AUR62007167 Chenopodium quinoa HOM05D006150 ORTHO05D007745 1.9e-90 336.7 201 77.1
AUR62018839 Chenopodium quinoa HOM05D006150 ORTHO05D007745 2.5e-90 336.3 201 75.6
Actinidia25909 Actinidia chinensis HOM05D006150 ORTHO05D007745 9.9e-71 271.2 284 50.7
Cre06.g290000 Chlamydomonas reinhardtii HOM05D006150 ORTHO05D007745 7.1e-69 265.0 260 51.9
MCO07G379 Micromonas commoda HOM05D006150 ORTHO05D007745 9.3e-69 264.6 282 46.8
Potri.001G150800 Populus trichocarpa HOM05D006150 ORTHO05D007745 9.3e-69 264.6 202 64.9
MD06G1047100 Malus domestica HOM05D006150 ORTHO05D007745 2.2e-62 243.4 264 51.9
MCO04G282 Micromonas commoda HOM05D006150 ORTHO05D007745 1.5e-55 220.7 260 47.3
Sabra01G0120800 Salix brachista HOM05D006150 ORTHO05D007745 3.5e-52 209.5 198 56.1
Hma1.2p1_0570F.1_g180440 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 1.1e-50 204.5 127 72.4
MELO3C014174.2 Cucumis melo HOM05D006150 ORTHO05D007745 8.1e-49 198.4 274 44.2
FAN18G0603 Fragaria x ananassa HOM05D006150 ORTHO05D007745 1.8e-48 197.2 168 58.9
CSS0048254 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 2.4e-40 170.2 96 82.3
Sabra01G0120600 Salix brachista HOM05D006150 ORTHO05D007745 3.8e-38 162.9 161 55.9
PSO717G0125 Papaver somniferum HOM05D006150 ORTHO05D007745 8.2e-33 145.2 101 67.3
Cpa.g.sc98.38 Carica papaya HOM05D006150 ORTHO05D007745 7.7e-31 138.7 80 73.8
BcaC01g03436 Brassica carinata HOM05D006150 ORTHO05D007745 7.2e-29 132.1 105 59.0
CBR_g38093 Chara braunii HOM05D006150 ORTHO05D007745 1.2e-28 131.3 67 80.6
GSVIVG01021810001 Vitis vinifera HOM05D006150 ORTHO05D007745 9.1e-16 88.6 70 61.4
Oeu040463.1 Olea europaea HOM05D001574 ORTHO05D000708 1.9e-13 80.9 58 69.0
Cpa.g.sc98.35 Carica papaya HOM05D006150 ORTHO05D007745 1.2e-12 78.2 56 66.1
Lsat_1_v5_gn_6_74120 Lactuca sativa HOM05D006150 ORTHO05D233887 4.1e-08 63.2 33 81.8
Lsat_1_v5_gn_2_23540 Lactuca sativa HOM05D002379 ORTHO05D003469 3.5e-07 60.1 85 41.2
Lsat_1_v5_gn_8_14120 Lactuca sativa HOM05D002379 ORTHO05D021531 3.5e-07 60.1 85 41.2
Lsat_1_v5_gn_9_81181 Lactuca sativa HOM05D002379 ORTHO05D003469 3.5e-07 60.1 85 41.2


User provided reference genes

Program Settings