Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G3523 Salvia bowleyana HOM05D038733 ORTHO05D009613 7.5e-178 627.1 321 100.0
SalBow1G6040 Salvia bowleyana HOM05D038733 ORTHO05D009613 7.1e-136 487.6 312 85.6
SalBow3G2121 Salvia bowleyana HOM05D038733 ORTHO05D005768 1.0e-57 228.0 130 93.8
SalBow5G4207 Salvia bowleyana HOM05D001356 ORTHO05D005768 1.8e-46 190.7 106 97.2
SalBow7G1731 Salvia bowleyana HOM05D007648 ORTHO05D009613 5.1e-17 92.8 75 70.7
Migut.C00899 Erythranthe guttata HOM05D007648 ORTHO05D009613 1.7e-12 77.8 75 60.0
Sopen06g017690 Solanum pennellii HOM05D007648 ORTHO05D009613 3.8e-12 76.6 51 72.5
PGSC0003DMG400023820 Solanum tuberosum HOM05D007648 ORTHO05D009613 4.9e-12 76.3 51 72.5
arahy.Tifrunner.gnm1.ann1.8I3IQY Arachis hypogaea HOM05D007648 ORTHO05D009613 6.4e-12 75.9 47 76.6
arahy.Tifrunner.gnm1.ann1.EILY3I Arachis hypogaea HOM05D007648 ORTHO05D009613 6.4e-12 75.9 47 76.6
CAN.G22.4 Capsicum annuum HOM05D007648 ORTHO05D009613 1.9e-11 74.3 46 76.1
CAN.G22.7 Capsicum annuum HOM05D007648 ORTHO05D009613 1.9e-11 74.3 46 78.3
Lj5g0008894 Lotus japonicus HOM05D007648 ORTHO05D009613 5.4e-11 72.8 46 76.1
unitig_748.g7721 Utricularia gibba HOM05D007648 ORTHO05D009613 5.4e-11 72.8 47 68.1
Cc10_g01140 Coffea canephora HOM05D007648 ORTHO05D009613 7.1e-11 72.4 52 69.2
DCAR_021446 Daucus carota HOM05D007648 ORTHO05D009613 2.1e-10 70.9 53 69.8
Psat6g001120 Pisum sativum HOM05D007648 ORTHO05D009613 2.1e-10 70.9 46 71.7
ClCG05G015420 Citrullus lanatus HOM05D007648 ORTHO05D009613 4.6e-10 69.7 45 68.9
Glyma.17G261200 Glycine max HOM05D007648 ORTHO05D009613 4.6e-10 69.7 44 72.7
Sabra14G0141300 Salix brachista HOM05D000525 ORTHO05D001368 6.0e-10 69.3 44 72.7
CsaV3_3G046120 Cucumis sativus L. HOM05D007648 ORTHO05D009613 7.9e-10 68.9 53 62.3
Phvul.001G002300 Phaseolus vulgaris HOM05D007648 ORTHO05D009613 7.9e-10 68.9 46 73.9
Potri.014G181400 Populus trichocarpa HOM05D007648 ORTHO05D009613 7.9e-10 68.9 44 72.7
Hund05152 Selenicereus undatus HOM05D000399 ORTHO05D000304 7.9e-10 68.9 83 45.8
Eucgr.F03708 Eucalyptus grandis HOM05D007648 ORTHO05D009613 1.0e-09 68.6 47 70.2
MD15G1006800 Malus domestica HOM05D007648 ORTHO05D009613 1.3e-09 68.2 53 62.3
Prupe.1G359500 Prunus persica HOM05D007648 ORTHO05D009613 1.3e-09 68.2 51 64.7
Aqoxy5G01099 Aquilegia oxysepala HOM05D007648 ORTHO05D009613 1.8e-09 67.8 47 70.2
Haze_22702 Corylus avellana HOM05D007648 ORTHO05D009613 2.3e-09 67.4 45 71.1
MELO3C003728.2 Cucumis melo HOM05D007648 ORTHO05D009613 2.3e-09 67.4 53 60.4
FAN20G1741 Fragaria x ananassa HOM05D007648 ORTHO05D009613 2.3e-09 67.4 51 60.8
Phvul.001G002600 Phaseolus vulgaris HOM05D007648 ORTHO05D009613 2.3e-09 67.4 46 71.7
GSVIVG01008741001 Vitis vinifera HOM05D007648 ORTHO05D009613 2.3e-09 67.4 46 71.7
AUR62013884 Chenopodium quinoa HOM05D007648 ORTHO05D009613 3.0e-09 67.0 44 65.9
COL.COLO4_26084 Corchorus olitorius HOM05D007648 ORTHO05D009613 3.0e-09 67.0 44 70.5
ECA238G3742 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.0e-09 67.0 46 67.4
FvH4_2g37960 Fragaria vesca HOM05D007648 ORTHO05D009613 3.0e-09 67.0 51 60.8
Lalb_Chr19g0131601 Lupinus albus HOM05D007648 ORTHO05D009613 3.0e-09 67.0 46 67.4
Medtr1g026100 Medicago truncatula HOM05D007648 ORTHO05D009613 3.0e-09 67.0 75 52.0
QL02p012929 Quercus lobata HOM05D007648 ORTHO05D009613 3.0e-09 67.0 44 72.7
CiPaw.07G143700 Carya illinoinensis HOM05D007648 ORTHO05D009613 3.9e-09 66.6 46 71.7
Ca_13484_v3 Cicer arietinum L. HOM05D007648 ORTHO05D009613 3.9e-09 66.6 46 67.4
Dinv31891 Davidia involucrata HOM05D007648 ORTHO05D009613 3.9e-09 66.6 44 72.7
TAR625G0376 Trochodendron aralioides HOM05D007648 ORTHO05D009613 3.9e-09 66.6 46 69.6
VMungo0647G0751 Vigna mungo HOM05D007648 ORTHO05D009613 3.9e-09 66.6 43 72.1
AUR62036713 Chenopodium quinoa HOM05D000399 ORTHO05D000304 6.7e-09 65.9 44 63.6
MD08G1007600 Malus domestica HOM05D007648 ORTHO05D009613 6.7e-09 65.9 53 62.3
Sed0006121 Sechium edule HOM05D007648 ORTHO05D009613 6.7e-09 65.9 47 61.7
Ciclev10003012m.g Citrus clementina HOM05D007648 ORTHO05D009613 1.1e-08 65.1 51 58.8
Atru.chr13.217 Acer truncatum HOM05D007648 ORTHO05D009613 1.5e-08 64.7 45 68.9
Manes.05G142600 Manihot esculenta HOM05D007648 ORTHO05D009613 1.5e-08 64.7 46 67.4
TWI12G0541 Tripterygium wilfordii HOM05D007648 ORTHO05D009613 1.5e-08 64.7 44 63.6
CSS0030217 Camellia sinensis var. sinensis HOM05D007648 ORTHO05D009613 1.9e-08 64.3 46 67.4
Thecc.08G051700 Theobroma cacao HOM05D007648 ORTHO05D009613 1.9e-08 64.3 44 68.2
BcaC07g37632 Brassica carinata HOM05D007648 ORTHO05D009613 2.5e-08 63.9 46 63.0
Gohir.A01G044700 Gossypium hirsutum HOM05D007648 ORTHO05D009613 2.5e-08 63.9 51 60.8
Gohir.D01G035600 Gossypium hirsutum HOM05D007648 ORTHO05D009613 2.5e-08 63.9 51 60.8
Sc02g0008880 Simmondsia chinensis HOM05D007648 ORTHO05D009613 2.5e-08 63.9 44 68.2
EL10Ac1g02083 Beta vulgaris HOM05D000399 ORTHO05D000304 3.3e-08 63.5 44 63.6
Duzib093G2040 Durio zibethinus HOM05D007648 ORTHO05D009613 3.3e-08 63.5 80 47.5
Gorai.002G043700 Gossypium raimondii HOM05D007648 ORTHO05D009613 3.3e-08 63.5 51 60.8
Lsat_1_v5_gn_5_1580 Lactuca sativa HOM05D007648 ORTHO05D009613 3.3e-08 63.5 75 48.0
Os02g0667000 Oryza sativa ssp. japonica HOM05D007648 ORTHO05D009613 3.3e-08 63.5 45 66.7
Os03g0159800 Oryza sativa ssp. japonica HOM05D007648 ORTHO05D009613 3.3e-08 63.5 45 66.7
Sc02g0008840 Simmondsia chinensis HOM05D007648 ORTHO05D009613 3.3e-08 63.5 44 68.2
A02p36690 Brassica napus HOM05D007648 ORTHO05D009613 4.3e-08 63.2 46 63.0
A08p09340 Brassica napus HOM05D007648 ORTHO05D009613 4.3e-08 63.2 46 63.0
BolC8t48002H Brassica oleracea HOM05D007648 ORTHO05D009613 4.3e-08 63.2 46 63.0
BraA02t08664Z Brassica rapa HOM05D007648 ORTHO05D009613 4.3e-08 63.2 46 63.0
RcHm_v2.0_Chr6g0303661 Rosa chinensis HOM05D007648 ORTHO05D009613 4.3e-08 63.2 44 63.6
AT1G76065 Arabidopsis thaliana HOM05D007648 ORTHO05D009613 5.6e-08 62.8 46 63.0
FAN15G0474 Fragaria x ananassa HOM05D007648 ORTHO05D009613 5.6e-08 62.8 51 56.9
vmacro17151 Vaccinium macrocarpon HOM05D007648 ORTHO05D009613 5.6e-08 62.8 46 63.0
CARHR069590 Cardamine hirsuta HOM05D007648 ORTHO05D009613 7.4e-08 62.4 46 63.0
PSO210G3155 Papaver somniferum HOM05D007648 ORTHO05D009613 7.4e-08 62.4 46 65.2
Rhsim07G0248300 Rhododendron simsii HOM05D007648 ORTHO05D009613 9.6e-08 62.0 46 60.9
Ah.00g000660 Amaranthus hybridus HOM05D007648 ORTHO05D009613 1.3e-07 61.6 44 59.1
BcaB07g30075 Brassica carinata HOM05D007648 ORTHO05D009613 1.3e-07 61.6 46 63.0
BraA08t32933Z Brassica rapa HOM05D007648 ORTHO05D009613 1.6e-07 61.2 46 60.9
Carub.0002s2295 Capsella rubella HOM05D007648 ORTHO05D009613 1.6e-07 61.2 46 60.9
HanXRQChr06g0185111 Helianthus annuus HOM05D007648 ORTHO05D009613 1.6e-07 61.2 46 65.2
Aa31LG4G6180 Aethionema arabicum HOM05D007648 ORTHO05D009613 2.1e-07 60.8 44 63.6
SalBow4G1641 Salvia bowleyana HOM05D001359 ORTHO05D001200 2.1e-07 60.8 30 96.7
Actinidia29767 Actinidia chinensis HOM05D007648 ORTHO05D009613 2.8e-07 60.5 44 65.9
AL2G36100 Arabidopsis lyrata HOM05D007648 ORTHO05D009613 2.8e-07 60.5 46 60.9
Thhalv10019391m.g Eutrema salsugineum HOM05D007648 ORTHO05D009613 3.7e-07 60.1 46 60.9
Rhsim07G0248100 Rhododendron simsii HOM05D007648 ORTHO05D009613 3.7e-07 60.1 42 66.7
CDE04G2628 Ceratophyllum demersum HOM05D007648 ORTHO05D009613 6.2e-07 59.3 45 62.2
HPP92_026879 Vanilla planifolia HOM05D007648 ORTHO05D009613 1.1e-06 58.5 49 59.2
THA.LOC104811443 Tarenaya hassleriana HOM05D007648 ORTHO05D009613 1.4e-06 58.2 46 56.5
HPP92_003481 Vanilla planifolia HOM05D007648 ORTHO05D009613 2.4e-06 57.4 126 33.3
Actinidia37950 Actinidia chinensis HOM05D007648 ORTHO05D009613 4.0e-06 56.6 39 66.7
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 6.9e-06 55.8 30 90.0


User provided reference genes

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