Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G3398 Salvia bowleyana HOM05D007621 ORTHO05D009631 0.0e+00 1202.6 621 100.0
SalBow7G0238 Salvia bowleyana HOM05D007621 ORTHO05D009631 0.0e+00 1192.9 621 99.2
MSTRG.14678 Avicennia marina HOM05D007621 ORTHO05D009631 1.1e-204 717.2 511 72.0
SGA_v2.0_scaffold49G18280 Striga asiatica HOM05D007621 ORTHO05D009631 1.1e-193 680.6 595 60.3
CSS0049226 Camellia sinensis var. sinensis HOM05D007621 ORTHO05D009631 1.3e-189 667.2 509 66.4
GSVIVG01003190001 Vitis vinifera HOM05D007621 ORTHO05D009631 2.2e-186 656.4 522 64.0
Dinv40478 Davidia involucrata HOM05D007621 ORTHO05D009631 2.9e-186 656.0 477 68.8
TAR624G0533 Trochodendron aralioides HOM05D007621 ORTHO05D009631 5.0e-186 655.2 476 68.5
Actinidia11809 Actinidia chinensis HOM05D007621 ORTHO05D009631 1.4e-185 653.7 516 64.0
CAN.G424.15 Capsicum annuum HOM05D007621 ORTHO05D009631 1.2e-184 650.6 481 68.6
Haze_06574 Corylus avellana HOM05D007621 ORTHO05D009631 7.9e-184 647.9 474 67.5
Manes.16G020600 Manihot esculenta HOM05D007621 ORTHO05D009631 3.9e-183 645.6 477 66.0
MBI02_g06002_MAGBIO Magnolia biondii HOM05D007621 ORTHO05D009631 6.7e-183 644.8 518 62.7
Rhsim02G0119600 Rhododendron simsii HOM05D007621 ORTHO05D009631 3.3e-182 642.5 543 60.6
ClCG03G005520 Citrullus lanatus HOM05D007621 ORTHO05D009631 6.3e-181 638.3 475 65.5
QL04p018250 Quercus lobata HOM05D007621 ORTHO05D009631 8.2e-181 637.9 523 61.6
ATR0693G363 Amborella trichopoda HOM05D007621 ORTHO05D009631 1.1e-180 637.5 509 60.9
Nitab4.5_0006573g0020 Nicotiana tabacum HOM05D007621 ORTHO05D009631 2.4e-180 636.3 481 67.6
Nitab4.5_0000190g0070 Nicotiana tabacum HOM05D007621 ORTHO05D009631 2.0e-179 633.3 435 72.4
PGSC0003DMG400022357 Solanum tuberosum HOM05D007621 ORTHO05D009631 1.3e-178 630.6 542 61.6
Peaxi162Scf00083g00022 Petunia axillaris HOM05D007621 ORTHO05D009631 2.9e-178 629.4 464 67.0
Cc02_g12430 Coffea canephora HOM05D007621 ORTHO05D009631 5.0e-178 628.6 466 66.5
Nn1g03894 Nelumbo nucifera HOM05D007621 ORTHO05D009631 1.1e-177 627.5 503 61.2
Sed0011037 Sechium edule HOM05D007621 ORTHO05D009631 1.9e-177 626.7 481 64.0
TWI38G0795 Tripterygium wilfordii HOM05D007621 ORTHO05D009631 3.6e-176 622.5 471 65.8
Sc14g0001480 Simmondsia chinensis HOM05D007621 ORTHO05D009631 3.0e-175 619.4 530 58.9
Solyc02g079140.2 Solanum lycopersicum HOM05D007621 ORTHO05D009631 6.7e-175 618.2 526 62.5
Hma1.2p1_1182F.1_g264810 Hydrangea macrophylla HOM05D007621 ORTHO05D009631 1.5e-174 617.1 492 64.0
Sopen02g023940 Solanum pennellii HOM05D007621 ORTHO05D009631 1.5e-174 617.1 542 60.9
Cfa000351 Carpinus fangiana HOM05D007621 ORTHO05D009631 5.7e-174 615.1 474 65.0
Ciclev10014484m.g Citrus clementina HOM05D007621 ORTHO05D009631 5.7e-174 615.1 506 63.0
Glyma.15G067500 Glycine max HOM05D007621 ORTHO05D009631 7.4e-174 614.8 507 60.2
AUR62016897 Chenopodium quinoa HOM05D007621 ORTHO05D009631 2.8e-173 612.8 504 61.9
EL10Ac8g20530 Beta vulgaris HOM05D007621 ORTHO05D009631 4.8e-173 612.1 452 66.6
AUR62014718 Chenopodium quinoa HOM05D007621 ORTHO05D009631 8.2e-173 611.3 505 61.4
CDE12G0841 Ceratophyllum demersum HOM05D007621 ORTHO05D009631 2.4e-172 609.8 439 66.3
Lj6g0025549 Lotus japonicus HOM05D007621 ORTHO05D009631 3.1e-172 609.4 496 60.5
HPP92_005890 Vanilla planifolia HOM05D007621 ORTHO05D009631 3.5e-171 605.9 427 67.7
VMungo0540G1980 Vigna mungo HOM05D007621 ORTHO05D009631 5.0e-170 602.1 501 59.1
MELO3C002556.2 Cucumis melo HOM05D007621 ORTHO05D009631 2.1e-168 596.7 476 62.0
Eucgr.E03798 Eucalyptus grandis HOM05D007621 ORTHO05D009631 2.1e-168 596.7 406 69.7
CsaV3_1G011790 Cucumis sativus L. HOM05D007621 ORTHO05D009631 6.1e-168 595.1 439 65.1
Prupe.4G036900 Prunus persica HOM05D007621 ORTHO05D009631 1.0e-167 594.3 455 63.7
FvH4_3g03980 Fragaria vesca HOM05D007621 ORTHO05D009631 1.4e-167 594.0 565 54.5
RcHm_v2.0_Chr5g0006311 Rosa chinensis HOM05D007621 ORTHO05D009631 2.3e-167 593.2 514 57.6
PGR042G2283 Punica granatum HOM05D007621 ORTHO05D009631 6.7e-167 591.7 565 55.2
CDE01G0329 Ceratophyllum demersum HOM05D007621 ORTHO05D009631 2.2e-165 586.6 473 61.3
arahy.Tifrunner.gnm1.ann1.M1GH8V Arachis hypogaea HOM05D007621 ORTHO05D009631 2.8e-165 586.3 553 55.7
SEGI_29793 Sequoiadendron giganteum HOM05D007621 ORTHO05D009631 2.8e-165 586.3 470 61.3
FAN11G2677 Fragaria x ananassa HOM05D007621 ORTHO05D009631 3.7e-165 585.9 527 56.2
MD05G1325500 Malus domestica HOM05D007621 ORTHO05D009631 8.3e-165 584.7 453 63.8
Zm00001eb069260 Zea mays HOM05D007621 ORTHO05D009631 8.3e-165 584.7 459 61.9
Psat1g208720 Pisum sativum HOM05D007621 ORTHO05D009631 1.8e-164 583.6 461 60.7
Os04g0636000 Oryza sativa ssp. japonica HOM05D007621 ORTHO05D009631 3.1e-164 582.8 472 61.7
Ca_00253_v3 Cicer arietinum L. HOM05D007621 ORTHO05D009631 7.7e-163 578.2 487 58.1
ECA248G3190 Erigeron canadensis HOM05D007621 ORTHO05D009631 3.8e-162 575.9 450 62.2
Lj1C1213T4 Lonicera japonica HOM05D007621 ORTHO05D009631 1.9e-161 573.5 508 57.1
Lsat_1_v5_gn_1_126820 Lactuca sativa HOM05D007621 ORTHO05D009631 8.8e-159 564.7 475 59.8
arahy.Tifrunner.gnm1.ann1.14L1JV Arachis hypogaea HOM05D007621 ORTHO05D009631 1.3e-157 560.8 557 53.5
HanXRQChr11g0338441 Helianthus annuus HOM05D007621 ORTHO05D009631 2.2e-157 560.1 434 62.4
CDE01G0148 Ceratophyllum demersum HOM05D007621 ORTHO05D009631 2.1e-152 543.5 404 64.1
Mapoly0104s0019 Marchantia polymorpha HOM05D007621 ORTHO05D009631 8.0e-152 541.6 416 61.3
FAN16G2797 Fragaria x ananassa HOM05D007621 ORTHO05D009631 3.0e-151 539.7 563 51.0
TPR.G36840 Trifolium pratense HOM05D007621 ORTHO05D009631 6.8e-151 538.5 459 57.5
Phvul.006G192200 Phaseolus vulgaris HOM05D007621 ORTHO05D009631 3.2e-148 529.6 492 55.3
PGR042G3240 Punica granatum HOM05D007621 ORTHO05D009631 5.4e-148 528.9 539 53.4
Hund23606 Selenicereus undatus HOM05D007621 ORTHO05D009631 4.5e-147 525.8 393 65.6
Zm00001eb081180 Zea mays HOM05D007621 ORTHO05D009631 1.3e-130 471.1 374 61.2
Thecc.06G199600 Theobroma cacao HOM05D007621 ORTHO05D009631 6.0e-123 445.7 455 51.9
Aqoxy1G02733 Aquilegia oxysepala HOM05D007621 ORTHO05D009631 6.6e-114 415.6 287 68.6
CBR_g725 Chara braunii HOM05D007621 ORTHO05D009631 8.7e-114 415.2 422 49.1
Eucgr.E03700 Eucalyptus grandis HOM05D007621 ORTHO05D009631 3.2e-100 370.2 259 69.1
Zm00001eb274720 Zea mays HOM05D007621 ORTHO05D009631 1.3e-96 358.2 288 62.5
CiPaw.09G157900 Carya illinoinensis HOM05D007621 ORTHO05D009631 3.7e-80 303.5 226 66.4
Medtr2g011780 Medicago truncatula HOM05D007621 ORTHO05D009631 9.0e-79 298.9 285 53.7
Oeu050825.1 Olea europaea HOM05D007621 ORTHO05D009631 2.5e-76 290.8 253 62.5
RcHm_v2.0_Chr7g0240451 Rosa chinensis HOM05D007621 ORTHO05D009631 4.2e-76 290.0 355 44.5
FAN25G1179 Fragaria x ananassa HOM05D007621 ORTHO05D009631 1.7e-72 278.1 254 58.3
arahy.Tifrunner.gnm1.ann1.C857YU Arachis hypogaea HOM05D007621 ORTHO05D009631 2.2e-61 241.1 279 48.4
Psat1g210360 Pisum sativum HOM05D007621 ORTHO05D009631 2.2e-56 224.6 192 54.7
FvH4_6g02023 Fragaria vesca HOM05D007621 ORTHO05D009631 9.8e-41 172.6 133 54.9
Glyma.13G246302 Glycine max HOM05D007621 ORTHO05D009631 1.2e-33 149.1 153 53.6
Atru.chr10.2012 Acer truncatum HOM05D007621 ORTHO05D009631 9.8e-33 146.0 133 54.1
Cre02.g116800 Chlamydomonas reinhardtii HOM05D007621 ORTHO05D009631 1.2e-30 139.0 555 26.1
Potri.004G034301 Populus trichocarpa HOM05D007621 ORTHO05D009631 3.4e-25 120.9 78 65.4
Cpa.g.sc27.127 Carica papaya HOM05D007621 ORTHO05D009631 6.0e-22 110.2 109 56.9
SGA_v2.0_scaffold32G13107 Striga asiatica HOM05D007621 ORTHO05D009631 2.1e-19 101.7 125 48.8
AagrBONN_evm.TU.Sc2ySwM_340.408 Anthoceros agrestis HOM05D007621 ORTHO05D009631 2.9e-16 91.3 78 53.8
Atru.chr10.2011 Acer truncatum HOM05D007621 ORTHO05D009631 5.1e-13 80.5 49 65.3
EL10Ac8g20531 Beta vulgaris HOM05D007621 ORTHO05D009631 6.2e-11 73.6 192 34.4
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 8.1e-11 73.2 190 31.6
Cre03.g188750 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D028824 1.8e-10 72.0 216 31.0
SGA_v2.0_scaffold86G26914 Striga asiatica HOM05D007621 ORTHO05D009631 6.8e-10 70.1 57 59.6
Sabra04G0020100 Salix brachista HOM05D007621 ORTHO05D009631 8.9e-10 69.7 172 30.2
Haze_26842 Corylus avellana HOM05D000032 ORTHO05D028824 2.9e-08 64.7 149 32.9
SGA_v2.0_scaffold26G11386 Striga asiatica HOM05D007621 ORTHO05D009631 5.4e-07 60.5 58 53.4


User provided reference genes

Program Settings