Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G2894 Salvia bowleyana HOM05D005039 ORTHO05D006145 7.4e-259 896.7 469 100.0
SGA_v2.0_scaffold188G40301 Striga asiatica HOM05D005039 ORTHO05D006145 1.7e-247 859.0 469 93.6
MSTRG.24939 Avicennia marina HOM05D005039 ORTHO05D006145 5.5e-246 854.0 469 93.2
Migut.C00159 Erythranthe guttata HOM05D005039 ORTHO05D006145 8.0e-245 850.1 469 93.0
Dinv29126 Davidia involucrata HOM05D005039 ORTHO05D006145 9.4e-238 826.6 469 90.2
CSS0008859 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 6.1e-237 823.9 469 90.6
TAR629G1612 Trochodendron aralioides HOM05D005039 ORTHO05D006145 8.8e-236 820.1 469 89.1
Nn3g19238 Nelumbo nucifera HOM05D005039 ORTHO05D006145 1.5e-235 819.3 469 89.1
MD07G1310900 Malus domestica HOM05D005039 ORTHO05D006145 2.8e-234 815.1 469 89.3
GSVIVG01024328001 Vitis vinifera HOM05D005039 ORTHO05D006145 3.7e-234 814.7 469 88.9
Sopen07g023860 Solanum pennellii HOM05D005039 ORTHO05D006145 8.2e-234 813.5 470 88.7
MELO3C021899.2 Cucumis melo HOM05D005039 ORTHO05D006145 1.1e-233 813.1 469 88.3
Cfa016075 Carpinus fangiana HOM05D005039 ORTHO05D006145 1.8e-233 812.4 469 88.9
Aqoxy1G03063 Aquilegia oxysepala HOM05D005039 ORTHO05D006145 2.4e-233 812.0 468 88.2
Solyc07g045330.3 Solanum lycopersicum HOM05D005039 ORTHO05D006145 2.4e-233 812.0 470 88.5
MBI04_g12218_MAGBIO Magnolia biondii HOM05D005039 ORTHO05D006145 4.1e-233 811.2 470 87.7
CANSAT21G2526 Cannabis sativa HOM05D005039 ORTHO05D006145 4.5e-232 807.7 469 87.4
CAN.G437.12 Capsicum annuum HOM05D005039 ORTHO05D006145 5.9e-232 807.4 470 88.3
Glyma.11G109900 Glycine max HOM05D005039 ORTHO05D006145 5.9e-232 807.4 469 87.8
Glyma.12G014800 Glycine max HOM05D005039 ORTHO05D006145 1.0e-231 806.6 469 88.1
Sed0001134 Sechium edule HOM05D005039 ORTHO05D006145 1.0e-231 806.6 469 87.6
CsaV3_2G014060 Cucumis sativus L. HOM05D005039 ORTHO05D006145 2.2e-231 805.4 469 88.3
HanXRQChr16g0512151 Helianthus annuus HOM05D005039 ORTHO05D006145 2.2e-231 805.4 469 88.5
RcHm_v2.0_Chr1g0384591 Rosa chinensis HOM05D005039 ORTHO05D006145 3.8e-231 804.7 469 88.1
Manes.08G160900 Manihot esculenta HOM05D005039 ORTHO05D006145 6.5e-231 803.9 469 87.6
TWI79G0887 Tripterygium wilfordii HOM05D005039 ORTHO05D006145 6.5e-231 803.9 469 87.6
Potri.013G077700 Populus trichocarpa HOM05D005039 ORTHO05D006145 1.9e-230 802.4 470 86.2
vmacro06372 Vaccinium macrocarpon HOM05D005039 ORTHO05D006145 2.5e-230 802.0 506 82.8
FvH4_7g34230 Fragaria vesca HOM05D005039 ORTHO05D006145 4.2e-230 801.2 469 87.0
FAN10G2688 Fragaria x ananassa HOM05D005039 ORTHO05D006145 4.2e-230 801.2 469 87.0
Ciclev10031435m.g Citrus clementina HOM05D005039 ORTHO05D006145 5.5e-230 800.8 469 87.8
Nn1g02122 Nelumbo nucifera HOM05D005039 ORTHO05D006145 7.2e-230 800.4 469 87.4
Phvul.011G017800 Phaseolus vulgaris HOM05D005039 ORTHO05D006145 1.6e-229 799.3 469 87.2
Lsat_1_v5_gn_9_47921 Lactuca sativa HOM05D005039 ORTHO05D006145 2.7e-229 798.5 469 87.8
QL09p020758 Quercus lobata HOM05D005039 ORTHO05D006145 6.1e-229 797.3 468 87.6
FAN01G1789 Fragaria x ananassa HOM05D005039 ORTHO05D006145 1.0e-228 796.6 469 86.4
Lj3g0003232 Lotus japonicus HOM05D005039 ORTHO05D006145 1.4e-228 796.2 468 86.3
Thecc.05G222600 Theobroma cacao HOM05D005039 ORTHO05D006145 1.4e-228 796.2 469 85.7
FAN03G0337 Fragaria x ananassa HOM05D005039 ORTHO05D006145 1.8e-228 795.8 471 86.6
Ah.13g072370 Amaranthus hybridus HOM05D005039 ORTHO05D006145 3.0e-228 795.0 469 88.1
Hund09811 Selenicereus undatus HOM05D005039 ORTHO05D006145 6.8e-228 793.9 493 84.0
Atru.chr12.1876 Acer truncatum HOM05D005039 ORTHO05D006145 8.8e-228 793.5 469 86.6
Ca_26497_v3 Cicer arietinum L. HOM05D005039 ORTHO05D006145 1.5e-227 792.7 469 86.4
Gohir.A02G125900 Gossypium hirsutum HOM05D005039 ORTHO05D006145 2.0e-227 792.3 469 85.7
Gohir.D03G054700 Gossypium hirsutum HOM05D005039 ORTHO05D006145 2.0e-227 792.3 469 85.7
Gorai.003G057600 Gossypium raimondii HOM05D005039 ORTHO05D006145 4.4e-227 791.2 469 85.5
Medtr5g005440 Medicago truncatula HOM05D005039 ORTHO05D006145 4.4e-227 791.2 468 86.1
Lalb_Chr09g0320081 Lupinus albus HOM05D005039 ORTHO05D006145 5.7e-227 790.8 468 85.0
Duzib106G2059 Durio zibethinus HOM05D005039 ORTHO05D006145 1.3e-226 789.6 469 85.7
ECA232G0266 Erigeron canadensis HOM05D005039 ORTHO05D006145 6.3e-226 787.3 463 86.8
THA.LOC104805716 Tarenaya hassleriana HOM05D005039 ORTHO05D006145 1.8e-225 785.8 469 85.3
ATR0829G179 Amborella trichopoda HOM05D005039 ORTHO05D006145 7.0e-225 783.9 469 84.4
PSO782G0889 Papaver somniferum HOM05D005039 ORTHO05D006145 1.6e-224 782.7 470 84.5
Sabra13G0066500 Salix brachista HOM05D005039 ORTHO05D006145 1.6e-224 782.7 506 80.0
PSO063G4466 Papaver somniferum HOM05D005039 ORTHO05D006145 2.3e-223 778.9 470 84.3
EL10Ac3g05043 Beta vulgaris HOM05D005039 ORTHO05D006145 3.8e-223 778.1 545 76.9
AT1G64990 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 2.8e-221 771.9 469 83.8
Carub.0002s1015 Capsella rubella HOM05D005039 ORTHO05D006145 2.8e-221 771.9 469 84.0
Peaxi162Scf00802g00029 Petunia axillaris HOM05D005039 ORTHO05D006145 4.7e-221 771.2 470 86.0
AL2G19600 Arabidopsis lyrata HOM05D005039 ORTHO05D006145 6.1e-221 770.8 469 83.6
Aa31LG2G2190 Aethionema arabicum HOM05D005039 ORTHO05D006145 4.0e-220 768.1 469 83.2
Carub.0007s1322 Capsella rubella HOM05D005039 ORTHO05D006145 2.0e-219 765.8 469 83.6
Eucgr.K00067 Eucalyptus grandis HOM05D005039 ORTHO05D006145 2.0e-219 765.8 449 88.2
Sp7g25580 Schrenkiella parvula HOM05D005039 ORTHO05D006145 2.6e-219 765.4 469 83.2
AUR62002093 Chenopodium quinoa HOM05D005039 ORTHO05D006145 2.2e-218 762.3 469 84.0
Thhalv10025115m.g Eutrema salsugineum HOM05D005039 ORTHO05D006145 4.9e-218 761.1 469 82.3
Nitab4.5_0009864g0010 Nicotiana tabacum HOM05D005039 ORTHO05D006145 1.4e-217 759.6 470 85.3
Zm00001eb430290 Zea mays HOM05D005039 ORTHO05D006145 1.8e-217 759.2 469 82.3
C01p23870 Brassica napus HOM05D005039 ORTHO05D006145 2.4e-217 758.8 469 82.1
Nitab4.5_0006992g0040 Nicotiana tabacum HOM05D005039 ORTHO05D006145 2.4e-217 758.8 491 81.7
Sp5g19320 Schrenkiella parvula HOM05D005039 ORTHO05D006145 2.4e-217 758.8 469 82.1
BcaNung01651 Brassica carinata HOM05D005039 ORTHO05D006145 7.0e-217 757.3 469 82.1
A01p18920 Brassica napus HOM05D005039 ORTHO05D006145 7.0e-217 757.3 469 81.9
AT4G27630 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 1.2e-216 756.5 469 82.3
BcaC09g50566 Brassica carinata HOM05D005039 ORTHO05D006145 1.2e-216 756.5 469 81.9
BolC1t02332H Brassica oleracea HOM05D005039 ORTHO05D006145 1.2e-216 756.5 469 81.9
CARHR056390 Cardamine hirsuta HOM05D005039 ORTHO05D006145 1.6e-216 756.1 469 82.3
CARHR235330 Cardamine hirsuta HOM05D005039 ORTHO05D006145 1.6e-216 756.1 469 81.7
Os04g0600800 Oryza sativa ssp. japonica HOM05D005039 ORTHO05D006145 1.6e-216 756.1 469 82.1
C02p21070 Brassica napus HOM05D005039 ORTHO05D006145 2.7e-216 755.4 470 82.1
BraA02t06350Z Brassica rapa HOM05D005039 ORTHO05D006145 2.7e-216 755.4 470 82.1
Oeu027894.4 Olea europaea HOM05D005039 ORTHO05D006145 4.5e-216 754.6 492 81.3
A02p12960 Brassica napus HOM05D005039 ORTHO05D006145 1.5e-214 749.6 471 81.7
BolC2t08248H Brassica oleracea HOM05D005039 ORTHO05D006145 1.2e-213 746.5 493 78.3
Duzib128G1855 Durio zibethinus HOM05D005039 ORTHO05D006145 8.0e-213 743.8 469 81.4
BraA01t01833Z Brassica rapa HOM05D005039 ORTHO05D006145 1.5e-211 739.6 497 77.1
PGR142G1194 Punica granatum HOM05D005039 ORTHO05D006145 1.6e-208 729.6 441 84.8
Sc13g0011000 Simmondsia chinensis HOM05D005039 ORTHO05D006145 1.9e-206 722.6 418 89.2
unitig_0.g2070 Utricularia gibba HOM05D005039 ORTHO05D006145 1.2e-200 703.4 461 80.9
Rhsim03G0224300 Rhododendron simsii HOM05D005039 ORTHO05D006145 1.5e-198 696.4 470 79.1
ClCG09G017310 Citrullus lanatus HOM05D005039 ORTHO05D006145 1.1e-196 690.3 397 88.9
arahy.Tifrunner.gnm1.ann1.GG16T8 Arachis hypogaea HOM05D005039 ORTHO05D006145 2.0e-195 686.0 418 84.2
arahy.Tifrunner.gnm1.ann1.IZT0PT Arachis hypogaea HOM05D005039 ORTHO05D006145 2.0e-195 686.0 418 84.2
Actinidia08765 Actinidia chinensis HOM05D005039 ORTHO05D006145 5.8e-195 684.5 418 84.9
AUR62028211 Chenopodium quinoa HOM05D005039 ORTHO05D006145 1.0e-191 673.7 423 82.3
CSS0032758 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 3.0e-191 672.2 469 77.0
Mapoly0094s0006 Marchantia polymorpha HOM05D005039 ORTHO05D006145 3.3e-190 668.7 469 71.4
DCAR_020429 Daucus carota HOM05D005039 ORTHO05D006145 2.4e-185 652.5 383 87.5
VMungo1127G0275 Vigna mungo HOM05D005039 ORTHO05D006145 4.5e-171 605.1 374 82.9
Cc02_g00100 Coffea canephora HOM05D005039 ORTHO05D006145 5.8e-171 604.7 373 82.6
CiPaw.05G212800 Carya illinoinensis HOM05D005039 ORTHO05D006145 1.9e-169 599.7 350 86.6
Prupe.2G329100 Prunus persica HOM05D005039 ORTHO05D006145 1.3e-167 593.6 340 91.5
SMO304G0068 Selaginella moellendorffii HOM05D005039 ORTHO05D006145 1.9e-166 589.7 464 64.4
HPP92_014410 Vanilla planifolia HOM05D005039 ORTHO05D006145 9.0e-164 580.9 469 67.4
CBR_g72647 Chara braunii HOM05D005039 ORTHO05D006145 3.4e-163 578.9 470 61.5
Psat7g155320 Pisum sativum HOM05D005039 ORTHO05D006145 1.1e-161 573.9 365 82.2
Lj3A884T54 Lonicera japonica HOM05D005039 ORTHO05D006145 8.7e-159 564.3 324 91.7
BcaB05g25317 Brassica carinata HOM05D005039 ORTHO05D006145 8.8e-143 511.1 312 80.4
Actinidia34332 Actinidia chinensis HOM05D005039 ORTHO05D006145 6.7e-135 485.0 282 90.1
MD01G1239200 Malus domestica HOM05D005039 ORTHO05D006145 2.8e-133 479.6 365 70.4
CDE11G0732 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 8.8e-127 458.0 324 76.5
PGSC0003DMG401017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 3.8e-114 416.0 246 88.6
PGSC0003DMG402017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 2.5e-89 333.6 182 89.6
COL.COLO4_15139 Corchorus olitorius HOM05D005039 ORTHO05D006145 5.6e-89 332.4 312 61.5
Haze_00371 Corylus avellana HOM05D005039 ORTHO05D006145 1.8e-87 327.4 238 73.9
Actinidia24520 Actinidia chinensis HOM05D005039 ORTHO05D006145 2.2e-85 320.5 173 89.6
AagrBONN_evm.TU.Sc2ySwM_369.165 Anthoceros agrestis HOM05D005039 ORTHO05D006145 1.2e-83 314.7 302 57.6
Cre16.g674739 Chlamydomonas reinhardtii HOM05D005039 ORTHO05D006145 1.3e-77 294.7 505 37.4
AagrBONN_evm.TU.Sc2ySwM_117.727 Anthoceros agrestis HOM05D005039 ORTHO05D006145 3.0e-74 283.5 210 60.0
AagrBONN_evm.TU.Sc2ySwM_369.410 Anthoceros agrestis HOM05D005039 ORTHO05D006145 1.1e-71 275.0 294 54.1
BcaC03g14670 Brassica carinata HOM05D005039 ORTHO05D006145 7.8e-67 258.8 160 85.6
EL10Ac3g05835 Beta vulgaris HOM05D005039 ORTHO05D006145 4.9e-61 239.6 195 70.3
CARHR057320 Cardamine hirsuta HOM05D005039 ORTHO05D006145 2.5e-57 227.3 412 41.0
BcaB05g24073 Brassica carinata HOM05D005039 ORTHO05D006145 5.6e-57 226.1 138 86.2
Cc02_g00110 Coffea canephora HOM05D005039 ORTHO05D006145 2.9e-53 213.8 119 93.3
MCO06G137 Micromonas commoda HOM05D005039 ORTHO05D006145 5.3e-47 193.0 332 36.4
SEGI_29432 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 1.0e-45 188.7 111 89.2
CDE11G0023 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 1.3e-45 188.3 107 79.4
Cpa.g.sc43.133 Carica papaya HOM05D005039 ORTHO05D006145 1.4e-44 184.9 111 87.4
SEGI_13634 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 1.2e-43 181.8 105 81.9
PRCOL_00000150 Prasinoderma coloniale HOM05D005039 ORTHO05D006145 1.0e-42 178.7 492 29.3
CSS0027952 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 6.9e-39 166.0 91 92.3
CSS0015728 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 2.6e-30 137.5 83 79.5
Carub.0008s0531 Capsella rubella HOM05D005039 ORTHO05D006145 6.5e-29 132.9 81 81.5
COL.COLO4_15138 Corchorus olitorius HOM05D005039 ORTHO05D006145 1.9e-28 131.3 72 86.1
CSS0031224 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 3.2e-28 130.6 74 85.1
Cpa.g.sc43.132 Carica papaya HOM05D005039 ORTHO05D006145 7.2e-28 129.4 74 85.1
Cpa.g.sc43.136 Carica papaya HOM05D005039 ORTHO05D006145 3.6e-27 127.1 72 86.1
ClCG09G017320 Citrullus lanatus HOM05D005039 ORTHO05D006145 1.0e-26 125.6 72 84.7
Oeu028985.2 Olea europaea HOM05D005039 ORTHO05D006145 2.5e-25 120.9 99 69.7
SHI14975 Sapria himalayana HOM05D000023 ORTHO05D000014 3.7e-24 117.1 79 75.9
SEGI_05893 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 2.5e-20 104.4 57 84.2
Solyc07g045270.2 Solanum lycopersicum HOM05D005039 ORTHO05D006145 5.5e-20 103.2 57 82.5
Carub.0008s0533 Capsella rubella HOM05D005039 ORTHO05D006145 5.3e-15 86.7 52 82.7
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 2.6e-14 84.3 57 80.7
MD01G1239000 Malus domestica HOM05D005039 ORTHO05D006145 1.0e-13 82.4 46 97.8
Potri.019G042201 Populus trichocarpa HOM05D005039 ORTHO05D006145 1.3e-13 82.0 52 86.5
EL10Ac7g16242 Beta vulgaris HOM05D005039 ORTHO05D006145 3.8e-13 80.5 44 90.9
GSVIVG01028619001 Vitis vinifera HOM05D005039 ORTHO05D048867 1.9e-12 78.2 74 59.5
MD01G1239100 Malus domestica HOM05D005039 ORTHO05D006145 5.9e-06 56.6 33 87.9


User provided reference genes

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