Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G2858 Salvia bowleyana HOM05D004655 ORTHO05D005567 6.1e-152 540.8 279 100.0
Lj1C737G5 Lonicera japonica HOM05D004655 ORTHO05D005567 2.7e-99 365.9 268 71.3
Migut.H01014 Erythranthe guttata HOM05D004655 ORTHO05D005567 6.0e-99 364.8 272 70.6
MELO3C018772.2 Cucumis melo HOM05D004655 ORTHO05D005567 3.0e-98 362.5 266 71.1
MSTRG.14176 Avicennia marina HOM05D004655 ORTHO05D005567 3.9e-98 362.1 267 72.3
CsaV3_7G004070 Cucumis sativus L. HOM05D004655 ORTHO05D005567 1.1e-97 360.5 266 71.1
ClCG00G002920 Citrullus lanatus HOM05D004655 ORTHO05D005567 4.3e-97 358.6 266 70.3
ClCG02G001360 Citrullus lanatus HOM05D004655 ORTHO05D005567 4.3e-97 358.6 266 70.3
arahy.Tifrunner.gnm1.ann1.S2JPPU Arachis hypogaea HOM05D004655 ORTHO05D005567 5.6e-97 358.2 266 70.3
Medtr4g045980 Medicago truncatula HOM05D004655 ORTHO05D005567 2.8e-96 355.9 266 70.3
THA.LOC104804073 Tarenaya hassleriana HOM05D004655 ORTHO05D005567 4.8e-96 355.1 266 69.9
arahy.Tifrunner.gnm1.ann1.81TW8H Arachis hypogaea HOM05D004655 ORTHO05D005567 8.1e-96 354.4 266 69.2
arahy.Tifrunner.gnm1.ann1.YR7HYJ Arachis hypogaea HOM05D004655 ORTHO05D005567 3.1e-95 352.4 266 70.7
Lalb_Chr01g0005451 Lupinus albus HOM05D004655 ORTHO05D005567 3.1e-95 352.4 266 69.2
Sed0025834 Sechium edule HOM05D004655 ORTHO05D005567 3.1e-95 352.4 270 67.8
arahy.Tifrunner.gnm1.ann1.XZ54ZU Arachis hypogaea HOM05D004655 ORTHO05D005567 9.0e-95 350.9 266 70.3
SalBow1G2826 Salvia bowleyana HOM05D004655 ORTHO05D005567 2.0e-94 349.7 262 70.2
Gohir.A04G106100 Gossypium hirsutum HOM05D004655 ORTHO05D005567 3.4e-94 349.0 267 68.5
RcHm_v2.0_Chr2g0161411 Rosa chinensis HOM05D004655 ORTHO05D005567 3.4e-94 349.0 266 68.0
Thecc.02G170400 Theobroma cacao HOM05D004655 ORTHO05D005567 3.4e-94 349.0 267 68.5
Manes.13G152400 Manihot esculenta HOM05D004655 ORTHO05D005567 4.5e-94 348.6 266 69.2
Gorai.012G132100 Gossypium raimondii HOM05D004655 ORTHO05D005567 5.8e-94 348.2 267 68.2
A09p58650 Brassica napus HOM05D004655 ORTHO05D005567 7.6e-94 347.8 266 68.4
C08p41940 Brassica napus HOM05D004655 ORTHO05D005567 7.6e-94 347.8 266 68.4
BraA09t41251Z Brassica rapa HOM05D004655 ORTHO05D005567 7.6e-94 347.8 266 68.4
FvH4_6g44420 Fragaria vesca HOM05D004655 ORTHO05D005567 7.6e-94 347.8 266 68.0
FAN14G2207 Fragaria x ananassa HOM05D004655 ORTHO05D005567 7.6e-94 347.8 266 68.0
Prupe.3G228700 Prunus persica HOM05D004655 ORTHO05D005567 7.6e-94 347.8 263 69.6
Sp3g34160 Schrenkiella parvula HOM05D004655 ORTHO05D005567 7.6e-94 347.8 267 67.8
QL08p036998 Quercus lobata HOM05D004655 ORTHO05D005567 1.0e-93 347.4 253 70.8
Gohir.D04G146200 Gossypium hirsutum HOM05D004655 ORTHO05D005567 1.7e-93 346.7 267 67.8
Lj3g0017119 Lotus japonicus HOM05D004655 ORTHO05D005567 2.2e-93 346.3 266 68.4
BcaC07g41186 Brassica carinata HOM05D004655 ORTHO05D005567 2.9e-93 345.9 266 68.0
BolC8t51757H Brassica oleracea HOM05D004655 ORTHO05D005567 2.9e-93 345.9 266 68.0
FAN02G3511 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.9e-93 345.9 267 68.2
FAN05G4368 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.9e-93 345.9 267 68.2
Nn1g03859 Nelumbo nucifera HOM05D004655 ORTHO05D005567 2.9e-93 345.9 267 67.4
Ciclev10016098m.g Citrus clementina HOM05D004655 ORTHO05D005567 3.8e-93 345.5 253 70.4
Actinidia12466 Actinidia chinensis HOM05D004655 ORTHO05D005567 4.9e-93 345.1 266 67.7
Aa31LG8G17800 Aethionema arabicum HOM05D004655 ORTHO05D005567 4.9e-93 345.1 266 68.0
MBI18_g27693_MAGBIO Magnolia biondii HOM05D004655 ORTHO05D005567 4.9e-93 345.1 265 68.7
AL3G54160 Arabidopsis lyrata HOM05D004655 ORTHO05D005567 6.5e-93 344.7 267 67.4
Cfa014528 Carpinus fangiana HOM05D004655 ORTHO05D005567 6.5e-93 344.7 267 68.2
Duzib132G0437 Durio zibethinus HOM05D004655 ORTHO05D005567 6.5e-93 344.7 267 67.4
Duzib132G0466 Durio zibethinus HOM05D004655 ORTHO05D005567 6.5e-93 344.7 267 67.4
Psat7g149680 Pisum sativum HOM05D004655 ORTHO05D005567 6.5e-93 344.7 263 69.2
CARHR111640 Cardamine hirsuta HOM05D004655 ORTHO05D005567 8.4e-93 344.4 267 67.8
PGR042G1100 Punica granatum HOM05D004655 ORTHO05D005567 8.4e-93 344.4 256 69.9
Carub.0003s3556 Capsella rubella HOM05D004655 ORTHO05D005567 1.1e-92 344.0 253 71.1
Eucgr.A01774 Eucalyptus grandis HOM05D004655 ORTHO05D005567 1.1e-92 344.0 266 69.2
unitig_21.g20001 Utricularia gibba HOM05D004655 ORTHO05D005567 1.1e-92 344.0 253 70.0
Ca_01544_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 1.4e-92 343.6 266 66.9
Lsat_1_v5_gn_3_40720 Lactuca sativa HOM05D004655 ORTHO05D005567 1.4e-92 343.6 264 68.9
Lj3g0013026 Lotus japonicus HOM05D004655 ORTHO05D005567 1.4e-92 343.6 253 71.5
TWI75G0473 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 1.4e-92 343.6 267 67.0
Glyma.06G299100 Glycine max HOM05D004655 ORTHO05D005567 1.9e-92 343.2 261 69.0
TWI36G0222 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 1.9e-92 343.2 267 66.7
Psat5g269080 Pisum sativum HOM05D004655 ORTHO05D005567 2.5e-92 342.8 265 67.9
HanXRQChr06g0171121 Helianthus annuus HOM05D004655 ORTHO05D005567 3.2e-92 342.4 265 69.4
TPR.G18073 Trifolium pratense HOM05D004655 ORTHO05D005567 4.2e-92 342.0 266 67.7
AT2G20890 Arabidopsis thaliana HOM05D004655 ORTHO05D005567 5.5e-92 341.7 253 70.4
TPR.G21652 Trifolium pratense HOM05D004655 ORTHO05D005567 5.5e-92 341.7 266 67.7
Zm00001eb324100 Zea mays HOM05D004655 ORTHO05D005567 5.5e-92 341.7 255 70.6
FAN02G1121 Fragaria x ananassa HOM05D004655 ORTHO05D005567 7.1e-92 341.3 267 67.0
VMungo1080G0396 Vigna mungo HOM05D004655 ORTHO05D005567 9.3e-92 340.9 266 66.9
BcaB08g34948 Brassica carinata HOM05D004655 ORTHO05D005567 1.2e-91 340.5 267 67.0
CSS0017466 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 1.2e-91 340.5 270 67.0
Phvul.011G110700 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 1.2e-91 340.5 248 70.6
Actinidia18535 Actinidia chinensis HOM05D004655 ORTHO05D005567 1.6e-91 340.1 266 66.9
CiPaw.04G122300 Carya illinoinensis HOM05D004655 ORTHO05D005567 1.6e-91 340.1 263 66.2
Thhalv10002049m.g Eutrema salsugineum HOM05D004655 ORTHO05D005567 1.6e-91 340.1 269 67.7
Lalb_Chr22g0356311 Lupinus albus HOM05D004655 ORTHO05D005567 1.6e-91 340.1 261 68.2
MD17G1085500 Malus domestica HOM05D004655 ORTHO05D005567 1.6e-91 340.1 266 66.5
TAR627G0814 Trochodendron aralioides HOM05D004655 ORTHO05D005567 1.6e-91 340.1 265 68.7
ATR0693G119 Amborella trichopoda HOM05D004655 ORTHO05D005567 2.1e-91 339.7 267 66.7
PSO541G1277 Papaver somniferum HOM05D004655 ORTHO05D005567 2.1e-91 339.7 253 70.4
PSO675G0243 Papaver somniferum HOM05D004655 ORTHO05D005567 2.1e-91 339.7 253 70.4
TAR629G1482 Trochodendron aralioides HOM05D004655 ORTHO05D005567 2.1e-91 339.7 266 66.2
Cc05_g06070 Coffea canephora HOM05D004655 ORTHO05D005567 2.7e-91 339.3 262 68.7
Aqoxy1G03905 Aquilegia oxysepala HOM05D004655 ORTHO05D005567 3.5e-91 339.0 253 70.0
Glyma.12G106600 Glycine max HOM05D004655 ORTHO05D005567 3.5e-91 339.0 261 68.2
Glyma.12G200200 Glycine max HOM05D004655 ORTHO05D005567 3.5e-91 339.0 267 67.4
Dinv13829 Davidia involucrata HOM05D004655 ORTHO05D005567 4.6e-91 338.6 267 66.7
MD09G1097200 Malus domestica HOM05D004655 ORTHO05D005567 6.0e-91 338.2 266 66.9
Atru.chr6.3084 Acer truncatum HOM05D004655 ORTHO05D005567 7.9e-91 337.8 253 69.2
Glyma.13G302100 Glycine max HOM05D004655 ORTHO05D005567 7.9e-91 337.8 267 67.0
GSVIVG01029990001 Vitis vinifera HOM05D004655 ORTHO05D005567 7.9e-91 337.8 266 65.8
EL10Ac9g20731 Beta vulgaris HOM05D004655 ORTHO05D005567 1.0e-90 337.4 263 67.3
ECA246G4617 Erigeron canadensis HOM05D004655 ORTHO05D005567 1.0e-90 337.4 268 67.9
COL.COLO4_13659 Corchorus olitorius HOM05D004655 ORTHO05D005567 1.3e-90 337.0 268 66.4
VMungo1127G2245 Vigna mungo HOM05D004655 ORTHO05D005567 1.3e-90 337.0 248 69.8
Os07g0558500 Oryza sativa ssp. japonica HOM05D004655 ORTHO05D005567 1.8e-90 336.7 255 69.4
Phvul.005G108600 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 1.8e-90 336.7 266 66.2
PGSC0003DMG400018330 Solanum tuberosum HOM05D004655 ORTHO05D005567 1.8e-90 336.7 268 67.5
Sopen07g028730 Solanum pennellii HOM05D004655 ORTHO05D005567 2.3e-90 336.3 268 67.5
SGA_v2.0_scaffold34G13911 Striga asiatica HOM05D004655 ORTHO05D005567 5.1e-90 335.1 291 62.9
Ah.01g005210 Amaranthus hybridus HOM05D004655 ORTHO05D005567 6.7e-90 334.7 266 66.2
Potri.019G117900 Populus trichocarpa HOM05D004655 ORTHO05D005567 1.1e-89 334.0 253 69.2
CiPaw.03G168300 Carya illinoinensis HOM05D004655 ORTHO05D005567 1.9e-89 333.2 263 66.5
CANSAT64G1156 Cannabis sativa HOM05D004655 ORTHO05D005567 3.3e-89 332.4 266 66.5
DCAR_012973 Daucus carota HOM05D004655 ORTHO05D005567 3.3e-89 332.4 266 65.8
AUR62037119 Chenopodium quinoa HOM05D004655 ORTHO05D005567 4.3e-89 332.0 265 65.7
Potri.013G148400 Populus trichocarpa HOM05D004655 ORTHO05D005567 4.3e-89 332.0 253 69.6
DCAR_019200 Daucus carota HOM05D004655 ORTHO05D005567 7.4e-89 331.3 253 68.4
AUR62032763 Chenopodium quinoa HOM05D004655 ORTHO05D005567 9.6e-89 330.9 262 66.4
CAN.G508.2 Capsicum annuum HOM05D004655 ORTHO05D005567 2.1e-88 329.7 248 69.4
Sc12g0002690 Simmondsia chinensis HOM05D004655 ORTHO05D005567 2.1e-88 329.7 265 66.8
HPP92_012362 Vanilla planifolia HOM05D004655 ORTHO05D005567 3.7e-88 328.9 268 64.9
Ca_20707_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 8.2e-88 327.8 256 68.0
SGA_v2.0_scaffold70G23458 Striga asiatica HOM05D004655 ORTHO05D005567 8.2e-88 327.8 245 71.0
Medtr2g089795 Medicago truncatula HOM05D004655 ORTHO05D005567 1.1e-87 327.4 261 66.3
CSS0020863 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 1.4e-87 327.0 263 65.4
vmacro12257 Vaccinium macrocarpon HOM05D004655 ORTHO05D005567 1.4e-87 327.0 265 66.4
Hma1.2p1_0662F.1_g198360 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 2.4e-87 326.2 263 66.2
CSS0004933 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 5.3e-87 325.1 263 65.0
Haze_13070 Corylus avellana HOM05D004655 ORTHO05D005567 7.2e-84 314.7 328 55.2
Hma1.2p1_0565F.1_g179650 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 7.2e-84 314.7 266 65.0
Nn1g06795 Nelumbo nucifera HOM05D004655 ORTHO05D005567 4.6e-83 312.0 250 64.4
Nn1g06798 Nelumbo nucifera HOM05D004655 ORTHO05D005567 4.6e-83 312.0 250 64.4
Rhsim06G0153100 Rhododendron simsii HOM05D004655 ORTHO05D005567 6.1e-83 311.6 291 59.5
Sabra19G0118300 Salix brachista HOM05D004655 ORTHO05D005567 6.7e-82 308.1 301 57.8
Sabra19G0135300 Salix brachista HOM05D004655 ORTHO05D005567 1.1e-81 307.4 301 57.8
Peaxi162Scf00007g02516 Petunia axillaris HOM05D004655 ORTHO05D005567 6.3e-80 301.6 285 59.6
Duzib052G1220 Durio zibethinus HOM05D004655 ORTHO05D005567 3.1e-79 299.3 231 67.1
Nitab4.5_0000769g0070 Nicotiana tabacum HOM05D004655 ORTHO05D005567 4.1e-79 298.9 256 64.1
Lj8C118T0 Lonicera japonica HOM05D004655 ORTHO05D005567 1.5e-78 297.0 264 62.5
Sabra13G0119700 Salix brachista HOM05D004655 ORTHO05D005567 2.0e-78 296.6 253 64.8
Nitab4.5_0001019g0090 Nicotiana tabacum HOM05D004655 ORTHO05D005567 5.0e-77 292.0 248 64.1
Duzib248G0290 Durio zibethinus HOM05D004655 ORTHO05D005567 2.5e-76 289.7 228 66.7
Pp3c19_17570 Physcomitrium patens HOM05D004655 ORTHO05D005567 1.8e-74 283.5 259 56.8
Zm00001eb106830 Zea mays HOM05D004655 ORTHO05D005567 8.8e-74 281.2 221 67.4
Pp3c21_14540 Physcomitrium patens HOM05D004655 ORTHO05D005567 9.1e-71 271.2 256 55.5
Mapoly0010s0156 Marchantia polymorpha HOM05D004655 ORTHO05D005567 1.0e-69 267.7 251 57.8
AagrBONN_evm.TU.Sc2ySwM_344.251 Anthoceros agrestis HOM05D004655 ORTHO05D005567 2.2e-69 266.5 230 58.3
SMO266G0053 Selaginella moellendorffii HOM05D004655 ORTHO05D005567 2.9e-69 266.2 230 59.6
FAN09G1462 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.1e-65 254.2 267 55.1
Ah.01g014420 Amaranthus hybridus HOM05D004655 ORTHO05D005567 4.1e-63 245.7 204 63.7
Sc12g0003940 Simmondsia chinensis HOM05D004655 ORTHO05D005567 4.1e-63 245.7 206 62.1
AUR62037125 Chenopodium quinoa HOM05D001718 ORTHO05D008006 4.5e-62 242.3 240 55.4
AUR62032764 Chenopodium quinoa HOM05D001718 ORTHO05D008006 9.4e-60 234.6 240 54.2
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 2.2e-53 213.4 250 47.6
CBR_g78876 Chara braunii HOM05D004655 ORTHO05D005567 7.2e-52 208.4 258 46.5
Cre13.g562850 Chlamydomonas reinhardtii HOM05D004655 ORTHO05D005567 3.5e-46 189.5 247 46.2
Cpa.g.sc34.80 Carica papaya HOM05D004655 ORTHO05D005567 3.8e-45 186.0 167 58.7
Dinv15502 Davidia involucrata HOM05D004655 ORTHO05D005567 2.5e-44 183.3 162 58.0
CDE05G0437 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 8.8e-42 174.9 184 52.2
CDE05G0433 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 8.6e-37 158.3 156 54.5
MCO07G428 Micromonas commoda HOM05D004655 ORTHO05D005567 1.5e-36 157.5 257 38.5
SEGI_32441 Sequoiadendron giganteum HOM05D004655 ORTHO05D005567 1.9e-36 157.1 131 61.1
VMungo0720G1089 Vigna mungo HOM05D004655 ORTHO05D005567 5.0e-21 105.9 83 69.9
Cpa.g.sc34.79 Carica papaya HOM05D004655 ORTHO05D005567 1.8e-18 97.4 65 76.9
ClCG02G001370 Citrullus lanatus HOM05D004655 ORTHO05D005567 2.3e-18 97.1 62 80.6
Sed0002097 Sechium edule HOM05D004655 ORTHO05D005567 3.7e-16 89.7 104 51.9
Oeu029438.1 Olea europaea HOM05D004655 ORTHO05D005567 3.9e-13 79.7 58 65.5
Sabra19G0118700 Salix brachista HOM05D004655 ORTHO05D005567 1.1e-10 71.6 113 43.4
Hma1.2p1_0479F.1_g161430 Hydrangea macrophylla HOM05D001315 ORTHO05D001618 2.6e-09 67.0 52 65.4
Glyma.15G250600 Glycine max HOM05D004655 ORTHO05D215793 6.0e-06 55.8 31 83.9
Oeu037167.1 Olea europaea HOM05D004655 ORTHO05D005567 7.8e-06 55.5 28 85.7


User provided reference genes

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