Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow1G3206 Salvia bowleyana HOM05D005860 ORTHO05D006977 4.0e-183 645.2 486 100.0
SalBow7G2829 Salvia bowleyana HOM05D005860 ORTHO05D006977 4.0e-183 645.2 486 100.0
Migut.K01447 Erythranthe guttata HOM05D005860 ORTHO05D006977 1.1e-135 487.6 484 77.7
Oeu058768.1 Olea europaea HOM05D005860 ORTHO05D006977 1.9e-132 476.9 459 80.2
MSTRG.15567 Avicennia marina HOM05D005860 ORTHO05D006977 4.8e-120 435.6 467 78.2
Lj7A609T51 Lonicera japonica HOM05D005860 ORTHO05D006977 4.9e-112 409.1 458 73.4
CSS0015596 Camellia sinensis var. sinensis HOM05D005860 ORTHO05D006977 2.7e-110 403.3 482 74.5
Peaxi162Scf00420g00442 Petunia axillaris HOM05D005860 ORTHO05D006977 2.5e-108 396.7 484 69.6
CSS0028115 Camellia sinensis var. sinensis HOM05D005860 ORTHO05D006977 3.3e-108 396.4 458 77.3
Actinidia30891 Actinidia chinensis HOM05D005860 ORTHO05D006977 5.6e-108 395.6 483 74.5
Sopen02g038590 Solanum pennellii HOM05D005860 ORTHO05D006977 7.3e-108 395.2 485 69.9
PGSC0003DMG400020220 Solanum tuberosum HOM05D005860 ORTHO05D006977 9.5e-108 394.8 459 72.1
Eucgr.J02311 Eucalyptus grandis HOM05D005860 ORTHO05D006977 1.2e-107 394.4 483 64.2
Cc02_g00900 Coffea canephora HOM05D005860 ORTHO05D006977 1.6e-107 394.0 461 69.0
Nitab4.5_0002887g0110 Nicotiana tabacum HOM05D005860 ORTHO05D006977 2.1e-107 393.7 473 70.4
Solyc02g093940.3 Solanum lycopersicum HOM05D005860 ORTHO05D006977 2.1e-107 393.7 485 69.9
CAN.G473.79 Capsicum annuum HOM05D005860 ORTHO05D006977 1.4e-106 391.0 459 71.5
Nitab4.5_0009757g0020 Nicotiana tabacum HOM05D005860 ORTHO05D006977 1.2e-105 387.9 457 71.8
Atru.chr4.382 Acer truncatum HOM05D005860 ORTHO05D006977 2.0e-105 387.1 464 70.3
Hma1.2p1_1219F.1_g267900 Hydrangea macrophylla HOM05D005860 ORTHO05D006977 2.6e-105 386.7 483 67.7
TAR622G0256 Trochodendron aralioides HOM05D005860 ORTHO05D006977 5.7e-105 385.6 482 64.3
SGA_v2.0_scaffold7G03541 Striga asiatica HOM05D005860 ORTHO05D006977 2.2e-104 383.6 445 72.1
Duzib116G0811 Durio zibethinus HOM05D005860 ORTHO05D006977 6.4e-104 382.1 479 68.3
Potri.017G067600 Populus trichocarpa HOM05D005860 ORTHO05D006977 6.4e-104 382.1 495 67.9
unitig_0.g543 Utricularia gibba HOM05D005860 ORTHO05D006977 6.4e-104 382.1 458 70.7
Cpa.g.sc171.37 Carica papaya HOM05D005860 ORTHO05D006977 1.1e-103 381.3 482 69.9
CiPaw.04G034700 Carya illinoinensis HOM05D005860 ORTHO05D006977 7.0e-103 378.6 461 63.6
Dinv19535 Davidia involucrata HOM05D005860 ORTHO05D006977 3.5e-102 376.3 442 72.2
GSVIVG01001819001 Vitis vinifera HOM05D005860 ORTHO05D006977 5.0e-101 372.5 483 68.1
DCAR_021767 Daucus carota HOM05D005860 ORTHO05D006977 8.6e-101 371.7 438 77.4
Manes.15G158200 Manihot esculenta HOM05D005860 ORTHO05D006977 8.6e-101 371.7 482 69.7
Sc16g0003100 Simmondsia chinensis HOM05D005860 ORTHO05D006977 1.9e-100 370.5 468 70.3
COL.COLO4_03595 Corchorus olitorius HOM05D005860 ORTHO05D006977 3.3e-100 369.8 460 72.2
QL02p072028 Quercus lobata HOM05D005860 ORTHO05D006977 7.3e-100 368.6 460 65.7
Sabra17G0063700 Salix brachista HOM05D005860 ORTHO05D006977 1.1e-98 364.8 485 65.8
Ciclev10011572m.g Citrus clementina HOM05D005860 ORTHO05D006977 1.2e-97 361.3 463 67.0
PGR083G1804 Punica granatum HOM05D005860 ORTHO05D006977 1.2e-97 361.3 463 54.9
Lj2g0013553 Lotus japonicus HOM05D005860 ORTHO05D006977 2.9e-96 356.7 488 68.9
Gohir.A10G079300 Gossypium hirsutum HOM05D005860 ORTHO05D006977 6.4e-96 355.5 442 68.3
Sed0023405 Sechium edule HOM05D005860 ORTHO05D006977 6.4e-96 355.5 459 71.0
EL10Ac1g02122 Beta vulgaris HOM05D005860 ORTHO05D006977 1.4e-95 354.4 443 73.4
MD17G1015100 Malus domestica HOM05D005860 ORTHO05D006977 3.2e-95 353.2 484 70.7
arahy.Tifrunner.gnm1.ann1.SB3XQV Arachis hypogaea HOM05D005860 ORTHO05D006977 5.4e-95 352.4 488 67.0
arahy.Tifrunner.gnm1.ann1.WZ54PF Arachis hypogaea HOM05D005860 ORTHO05D006977 9.2e-95 351.7 488 67.2
Ah.03g142080 Amaranthus hybridus HOM05D005860 ORTHO05D006977 1.2e-94 351.3 463 71.7
Gorai.011G077700 Gossypium raimondii HOM05D005860 ORTHO05D006977 2.0e-94 350.5 442 67.6
FvH4_6g53060 Fragaria vesca HOM05D005860 ORTHO05D006977 4.6e-94 349.4 459 73.4
Glyma.19G075100 Glycine max HOM05D005860 ORTHO05D006977 1.0e-93 348.2 486 65.0
FAN05G4081 Fragaria x ananassa HOM05D005860 ORTHO05D006977 3.0e-93 346.7 459 73.0
Phvul.004G147000 Phaseolus vulgaris HOM05D005860 ORTHO05D006977 3.9e-93 346.3 484 68.2
TAR629G2046 Trochodendron aralioides HOM05D005860 ORTHO05D006977 5.0e-93 345.9 485 59.6
THA.LOC104825612 Tarenaya hassleriana HOM05D005860 ORTHO05D006977 6.6e-93 345.5 485 63.5
Haze_14838 Corylus avellana HOM05D005860 ORTHO05D006977 5.6e-92 342.4 517 61.3
RcHm_v2.0_Chr2g0174841 Rosa chinensis HOM05D005860 ORTHO05D006977 7.3e-92 342.0 459 72.5
FAN09G0694 Fragaria x ananassa HOM05D005860 ORTHO05D006977 1.6e-91 340.9 459 72.5
TWI56G1326 Tripterygium wilfordii HOM05D005860 ORTHO05D006977 1.6e-91 340.9 485 66.2
VMungo0464G0018 Vigna mungo HOM05D005860 ORTHO05D006977 6.2e-91 339.0 460 69.8
PSO478G3943 Papaver somniferum HOM05D005860 ORTHO05D006977 1.1e-90 338.2 470 66.0
Aqoxy5G03469 Aquilegia oxysepala HOM05D005860 ORTHO05D006977 3.1e-90 336.7 477 66.9
ECA232G2764 Erigeron canadensis HOM05D005860 ORTHO05D006977 5.2e-90 335.9 460 67.2
Lju41A50T54 Lonicera japonica HOM05D005860 ORTHO05D006977 8.9e-90 335.1 442 69.5
PSO017G5933 Papaver somniferum HOM05D005860 ORTHO05D006977 1.2e-89 334.7 470 66.2
Hund24045 Selenicereus undatus HOM05D005860 ORTHO05D006977 2.0e-89 334.0 464 68.8
Glyma.05G075600 Glycine max HOM05D005860 ORTHO05D006977 4.4e-89 332.8 467 63.8
FAN14G2391 Fragaria x ananassa HOM05D005860 ORTHO05D006977 5.8e-89 332.4 459 61.9
Lalb_Chr02g0157831 Lupinus albus HOM05D005860 ORTHO05D006977 9.9e-89 331.6 486 66.7
Phvul.004G055500 Phaseolus vulgaris HOM05D005860 ORTHO05D006977 4.9e-88 329.3 486 61.3
AUR62043070 Chenopodium quinoa HOM05D005860 ORTHO05D006977 1.1e-87 328.2 441 70.5
TPR.G5727 Trifolium pratense HOM05D001503 ORTHO05D003820 1.9e-87 327.4 461 64.4
PSO782G4049 Papaver somniferum HOM05D005860 ORTHO05D006977 4.1e-87 326.2 448 64.5
AUR62032474 Chenopodium quinoa HOM05D005860 ORTHO05D006977 9.2e-87 325.1 439 69.9
ClCG01G016270 Citrullus lanatus HOM05D005860 ORTHO05D006977 1.2e-86 324.7 459 67.8
Medtr2g034600 Medicago truncatula HOM05D005860 ORTHO05D006977 1.6e-86 324.3 460 65.9
Oeu050423.1 Olea europaea HOM05D005860 ORTHO05D006977 6.0e-86 322.4 219 77.6
CsaV3_6G042570 Cucumis sativus L. HOM05D005860 ORTHO05D006977 7.8e-86 322.0 459 68.2
HanXRQChr15g0486891 Helianthus annuus HOM05D005860 ORTHO05D006977 7.8e-86 322.0 464 67.5
MELO3C007497.2 Cucumis melo HOM05D005860 ORTHO05D006977 1.7e-85 320.9 452 68.6
ATR0686G114 Amborella trichopoda HOM05D005860 ORTHO05D006977 4.3e-84 316.2 458 62.0
PSO063G3212 Papaver somniferum HOM05D005860 ORTHO05D006977 9.5e-84 315.1 460 62.4
Nn4g22386 Nelumbo nucifera HOM05D005860 ORTHO05D006977 1.6e-83 314.3 394 59.1
A01p23060 Brassica napus HOM05D005860 ORTHO05D006977 4.7e-83 312.8 436 66.7
Psat1g161720 Pisum sativum HOM05D005860 ORTHO05D006977 4.7e-83 312.8 460 66.5
BraA01t02219Z Brassica rapa HOM05D005860 ORTHO05D006977 6.2e-83 312.4 435 66.9
BcaC09g50132 Brassica carinata HOM05D005860 ORTHO05D006977 8.1e-83 312.0 435 66.7
Sp7g12700 Schrenkiella parvula HOM05D005860 ORTHO05D006977 3.1e-82 310.1 439 65.6
Thecc.08G160800 Theobroma cacao HOM05D005860 ORTHO05D006977 6.8e-82 308.9 384 72.4
BcaNung00353 Brassica carinata HOM05D005860 ORTHO05D006977 8.9e-82 308.5 438 65.8
C01p28690 Brassica napus HOM05D005860 ORTHO05D006977 1.5e-81 307.8 435 66.2
BolC1t02795H Brassica oleracea HOM05D005860 ORTHO05D006977 1.5e-81 307.8 435 66.2
Thhalv10025001m.g Eutrema salsugineum HOM05D005860 ORTHO05D006977 1.5e-81 307.8 439 65.6
AL7G41520 Arabidopsis lyrata HOM05D005860 ORTHO05D006977 2.6e-81 307.0 438 65.5
Carub.0007s2760 Capsella rubella HOM05D005860 ORTHO05D006977 7.6e-81 305.4 434 65.4
CARHR220830 Cardamine hirsuta HOM05D005860 ORTHO05D006977 1.3e-80 304.7 434 66.1
AT4G14605 Arabidopsis thaliana HOM05D005860 ORTHO05D006977 1.1e-79 301.6 438 64.8
CANSAT64G0040 Cannabis sativa HOM05D005860 ORTHO05D006977 2.7e-78 297.0 491 57.8
Rhsim08G0044700 Rhododendron simsii HOM05D005860 ORTHO05D006977 1.7e-77 294.3 483 51.8
Aa31LG9G2730 Aethionema arabicum HOM05D005860 ORTHO05D006977 1.1e-76 291.6 436 64.7
Rhsim08G0045000 Rhododendron simsii HOM05D005860 ORTHO05D006977 1.9e-76 290.8 482 61.6
Rhsim08G0044500 Rhododendron simsii HOM05D005860 ORTHO05D006977 2.5e-76 290.4 460 50.2
Sed0015041 Sechium edule HOM05D005860 ORTHO05D006977 7.3e-76 288.9 454 56.8
CiPaw.01G128900 Carya illinoinensis HOM05D005860 ORTHO05D006977 8.1e-75 285.4 472 64.6
CDE09G0687 Ceratophyllum demersum HOM05D005860 ORTHO05D006977 3.4e-73 280.0 429 57.8
vmacro18326 Vaccinium macrocarpon HOM05D005860 ORTHO05D006977 6.0e-70 269.2 463 60.3
Zm00001eb246440 Zea mays HOM05D005860 ORTHO05D006977 1.0e-69 268.5 422 60.2
Rhsim08G0044400 Rhododendron simsii HOM05D005860 ORTHO05D006977 6.6e-69 265.8 451 58.5
Glyma.09G171700 Glycine max HOM05D005860 ORTHO05D006977 1.4e-66 258.1 239 61.1
Gohir.D10G072200 Gossypium hirsutum HOM05D005860 ORTHO05D006977 2.0e-65 254.2 270 70.0
Prupe.3G302700 Prunus persica HOM05D005860 ORTHO05D006977 7.9e-62 242.3 370 74.3
Lsat_1_v5_gn_4_185440 Lactuca sativa HOM05D005860 ORTHO05D006977 4.3e-52 209.9 370 69.7
Cfa015733 Carpinus fangiana HOM05D005860 ORTHO05D006977 2.7e-46 190.7 167 61.7
Migut.C00523 Erythranthe guttata HOM05D005860 ORTHO05D006977 1.4e-42 178.3 134 73.1
Rhsim08G0044900 Rhododendron simsii HOM05D005860 ORTHO05D006977 1.2e-41 175.3 373 50.9
HPP92_024250 Vanilla planifolia HOM05D005860 ORTHO05D006977 5.5e-39 166.4 346 59.0
HPP92_024230 Vanilla planifolia HOM05D005860 ORTHO05D006977 1.1e-36 158.7 336 60.4
Haze_00763 Corylus avellana HOM05D005860 ORTHO05D006977 5.7e-36 156.4 363 43.5
Os02g0602400 Oryza sativa ssp. japonica HOM05D005860 ORTHO05D006977 2.9e-32 144.1 269 53.2
ATR0686G162 Amborella trichopoda HOM05D005860 ORTHO05D006977 2.1e-30 137.9 374 34.5
FAN14G0528 Fragaria x ananassa HOM05D005860 ORTHO05D006977 4.7e-30 136.7 270 70.0
Mapoly0029s0044 Marchantia polymorpha HOM05D005860 ORTHO05D006977 7.9e-30 136.0 421 43.7
Pp3c9_18330 Physcomitrium patens HOM05D005860 ORTHO05D006977 1.5e-25 121.7 424 46.2
vmacro18330 Vaccinium macrocarpon HOM05D005860 ORTHO05D006977 1.3e-24 118.6 119 51.3
Rhsim08G0044800 Rhododendron simsii HOM05D005860 ORTHO05D006977 1.1e-23 115.5 111 56.8
ATR0609G011 Amborella trichopoda HOM05D005860 ORTHO05D006977 4.7e-22 110.2 268 39.2
Glyma.09G171766 Glycine max HOM05D005860 ORTHO05D006977 3.9e-21 107.1 143 69.9
HPP92_024251 Vanilla planifolia HOM05D005860 ORTHO05D006977 3.7e-19 100.5 91 54.9
Pp3c15_12290 Physcomitrium patens HOM05D005860 ORTHO05D006977 4.8e-19 100.1 460 46.7
TAR374G0650 Trochodendron aralioides HOM05D005860 ORTHO05D006977 6.3e-19 99.8 319 28.2
Sed0001458 Sechium edule HOM05D005860 ORTHO05D006977 2.2e-16 91.3 109 49.5
vmacro18328 Vaccinium macrocarpon HOM05D005860 ORTHO05D006977 1.9e-15 88.2 88 54.5
TAR374G0834 Trochodendron aralioides HOM05D005860 ORTHO05D006977 1.2e-14 85.5 58 72.4
TPR.G88 Trifolium pratense HOM05D005860 ORTHO05D006977 6.7e-13 79.7 58 62.1
AagrBONN_evm.TU.Sc2ySwM_117.926 Anthoceros agrestis HOM05D000273 ORTHO05D006977 5.7e-12 76.6 177 29.4
Mapoly0007s0012 Marchantia polymorpha HOM05D005860 ORTHO05D006977 7.7e-09 66.2 164 29.3
vmacro18329 Vaccinium macrocarpon HOM05D005860 ORTHO05D006977 8.5e-08 62.8 168 33.3
Ciclev10028120m.g Citrus clementina HOM05D005605 ORTHO05D007615 9.4e-07 59.3 60 46.7
TWI31G1015 Tripterygium wilfordii HOM05D005605 ORTHO05D007615 1.2e-06 58.9 62 40.3
Carub.0004s0075 Capsella rubella HOM05D005605 ORTHO05D007615 1.6e-06 58.5 62 41.9
ATR1098G094 Amborella trichopoda HOM05D001557 ORTHO05D001299 2.1e-06 58.2 56 48.2
AUR62016738 Chenopodium quinoa HOM05D005605 ORTHO05D007615 3.6e-06 57.4 62 41.9
Ca_17273_v3 Cicer arietinum L. HOM05D002901 ORTHO05D003183 3.6e-06 57.4 52 51.9
Gorai.013G037000 Gossypium raimondii HOM05D005605 ORTHO05D007615 3.6e-06 57.4 62 41.9
Lalb_Chr05g0222181 Lupinus albus HOM05D002901 ORTHO05D003183 3.6e-06 57.4 52 50.0
MD05G1066000 Malus domestica HOM05D005605 ORTHO05D007615 3.6e-06 57.4 56 46.4
Medtr1g115415 Medicago truncatula HOM05D002901 ORTHO05D003183 3.6e-06 57.4 52 51.9
TPR.G34335 Trifolium pratense HOM05D002901 ORTHO05D003183 3.6e-06 57.4 52 51.9
Atru.chr5.3019 Acer truncatum HOM05D005605 ORTHO05D007615 4.7e-06 57.0 62 41.9
BcaB08g35002 Brassica carinata HOM05D005605 ORTHO05D007615 4.7e-06 57.0 62 41.9
Aa31LG7G14820 Aethionema arabicum HOM05D005605 ORTHO05D007615 6.1e-06 56.6 61 42.6
AagrBONN_evm.TU.Sc2ySwM_368.2733 Anthoceros agrestis HOM05D005605 ORTHO05D001299 6.1e-06 56.6 44 61.4
AL4G10940 Arabidopsis lyrata HOM05D005605 ORTHO05D007615 6.1e-06 56.6 62 40.3
AT2G21710 Arabidopsis thaliana HOM05D005605 ORTHO05D007615 6.1e-06 56.6 62 40.3
Thhalv10000085m.g Eutrema salsugineum HOM05D005605 ORTHO05D007615 6.1e-06 56.6 60 41.7
Glyma.08G046300 Glycine max HOM05D002901 ORTHO05D003183 6.1e-06 56.6 52 50.0
Lj4g0013449 Lotus japonicus HOM05D002901 ORTHO05D003183 6.1e-06 56.6 52 50.0
Phvul.002G321600 Phaseolus vulgaris HOM05D002901 ORTHO05D003183 6.1e-06 56.6 52 50.0
Potri.013G116700 Populus trichocarpa HOM05D002901 ORTHO05D003183 6.1e-06 56.6 52 50.0
Sabra13G0098800 Salix brachista HOM05D002901 ORTHO05D003183 6.1e-06 56.6 52 50.0
VMungo0251G0115 Vigna mungo HOM05D002901 ORTHO05D003183 6.1e-06 56.6 52 50.0
arahy.Tifrunner.gnm1.ann1.HA7VEA Arachis hypogaea HOM05D001631 ORTHO05D003183 8.0e-06 56.2 52 48.1
arahy.Tifrunner.gnm1.ann1.IVXM4E Arachis hypogaea HOM05D002901 ORTHO05D003183 8.0e-06 56.2 52 48.1
AUR62011322 Chenopodium quinoa HOM05D005605 ORTHO05D007615 8.0e-06 56.2 62 40.3
Duzib052G1004 Durio zibethinus HOM05D005605 ORTHO05D007615 8.0e-06 56.2 62 40.3
SHI09181 Sapria himalayana HOM05D002901 ORTHO05D003183 8.0e-06 56.2 52 50.0
Sed0026481 Sechium edule HOM05D002901 ORTHO05D003183 8.0e-06 56.2 52 50.0


User provided reference genes

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