Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G2597 Salvia bowleyana HOM05D005174 ORTHO05D006784 5.6e-198 694.1 361 100.0
MSTRG.1457 Avicennia marina HOM05D005174 ORTHO05D006784 4.5e-131 471.9 361 71.5
Migut.C01145 Erythranthe guttata HOM05D005174 ORTHO05D006784 6.1e-120 434.9 361 67.3
Dinv40398 Davidia involucrata HOM05D005174 ORTHO05D006784 1.8e-119 433.3 361 65.1
SGA_v2.0_scaffold52G18977 Striga asiatica HOM05D005174 ORTHO05D006784 2.3e-119 433.0 361 66.2
Oeu047941.1 Olea europaea HOM05D005174 ORTHO05D006784 1.2e-115 420.6 369 64.5
CSS0047682 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 4.7e-112 408.7 359 62.4
CSS0048949 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 1.5e-110 403.7 359 62.1
Cc01_g07610 Coffea canephora HOM05D005174 ORTHO05D006784 5.8e-110 401.7 359 61.0
Gorai.005G090400 Gossypium raimondii HOM05D005174 ORTHO05D006784 1.3e-109 400.6 363 62.8
COL.COLO4_12205 Corchorus olitorius HOM05D005174 ORTHO05D006784 2.2e-109 399.8 363 62.3
Glyma.06G111200 Glycine max HOM05D005174 ORTHO05D006784 2.9e-109 399.4 364 62.6
PGSC0003DMG400017574 Solanum tuberosum HOM05D005174 ORTHO05D006784 4.9e-109 398.7 361 60.4
Gorai.009G244400 Gossypium raimondii HOM05D005174 ORTHO05D006784 8.3e-109 397.9 361 61.8
Gohir.A05G233700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.4e-108 397.1 361 61.8
Gohir.D05G236100 Gossypium hirsutum HOM05D005174 ORTHO05D006784 5.4e-108 395.2 361 61.5
GSVIVG01008896001 Vitis vinifera HOM05D005174 ORTHO05D006784 2.0e-107 393.3 363 61.2
Thecc.08G122000 Theobroma cacao HOM05D005174 ORTHO05D006784 2.7e-107 392.9 363 61.2
TAR381G1686 Trochodendron aralioides HOM05D005174 ORTHO05D006784 6.0e-107 391.7 358 60.3
Sopen06g020560 Solanum pennellii HOM05D005174 ORTHO05D006784 2.1e-104 383.3 361 58.7
Duzib116G0013 Durio zibethinus HOM05D005174 ORTHO05D006784 2.8e-104 382.9 361 60.7
Eucgr.H00450 Eucalyptus grandis HOM05D005174 ORTHO05D006784 3.6e-104 382.5 359 60.2
Lj5g0013947 Lotus japonicus HOM05D005174 ORTHO05D006784 3.6e-104 382.5 360 59.7
Solyc06g060420.3 Solanum lycopersicum HOM05D005174 ORTHO05D006784 3.6e-104 382.5 361 59.0
Gohir.D02G080900 Gossypium hirsutum HOM05D005174 ORTHO05D006784 4.7e-104 382.1 363 61.2
Potri.005G175900 Populus trichocarpa HOM05D005174 ORTHO05D006784 1.1e-103 380.9 358 59.5
Duzib093G0119 Durio zibethinus HOM05D005174 ORTHO05D006784 1.4e-103 380.6 362 60.2
Nitab4.5_0008211g0030 Nicotiana tabacum HOM05D005174 ORTHO05D006784 3.1e-103 379.4 359 59.1
VMungo1309G0682 Vigna mungo HOM05D005174 ORTHO05D006784 3.1e-103 379.4 357 59.9
Glyma.14G147200 Glycine max HOM05D005174 ORTHO05D006784 8.9e-103 377.9 361 57.6
arahy.Tifrunner.gnm1.ann1.3YB7R6 Arachis hypogaea HOM05D005174 ORTHO05D006784 1.2e-102 377.5 356 61.5
Lj1g0014313 Lotus japonicus HOM05D005174 ORTHO05D006784 3.4e-102 375.9 361 60.7
Phvul.009G123200 Phaseolus vulgaris HOM05D005174 ORTHO05D006784 4.4e-102 375.6 358 60.1
Ca_13578_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 5.8e-102 375.2 365 60.0
Psat5g120840 Pisum sativum HOM05D005174 ORTHO05D006784 5.8e-102 375.2 361 59.8
Prupe.1G501000 Prunus persica HOM05D005174 ORTHO05D006784 5.8e-102 375.2 361 58.4
Manes.02G161600 Manihot esculenta HOM05D005174 ORTHO05D006784 1.3e-101 374.0 361 57.3
ECA232G2439 Erigeron canadensis HOM05D005174 ORTHO05D006784 8.3e-101 371.3 357 59.1
Psat2g085920 Pisum sativum HOM05D005174 ORTHO05D006784 8.3e-101 371.3 373 57.9
PGR044G1014 Punica granatum HOM05D005174 ORTHO05D006784 1.4e-100 370.5 363 57.6
Lalb_Chr08g0241531 Lupinus albus HOM05D005174 ORTHO05D006784 5.4e-100 368.6 360 57.8
CANSAT25G0921 Cannabis sativa HOM05D005174 ORTHO05D006784 1.6e-99 367.1 360 58.6
Cpa.g.sc36.39 Carica papaya HOM05D005174 ORTHO05D006784 1.6e-99 367.1 348 59.5
Hund24749 Selenicereus undatus HOM05D005174 ORTHO05D006784 2.1e-99 366.7 358 58.1
HanXRQChr02g0041151 Helianthus annuus HOM05D005174 ORTHO05D006784 1.0e-98 364.4 361 58.7
Medtr3g072620 Medicago truncatula HOM05D005174 ORTHO05D006784 1.7e-98 363.6 356 59.8
Lalb_Chr17g0343851 Lupinus albus HOM05D005174 ORTHO05D006784 1.1e-97 360.9 362 57.2
ClCG11G015640 Citrullus lanatus HOM05D005174 ORTHO05D006784 1.9e-97 360.1 356 57.0
TWI56G0960 Tripterygium wilfordii HOM05D005174 ORTHO05D006784 1.9e-97 360.1 354 58.5
Cfa015995 Carpinus fangiana HOM05D005174 ORTHO05D006784 3.3e-97 359.4 349 59.3
CsaV3_4G028370 Cucumis sativus L. HOM05D005174 ORTHO05D006784 4.7e-96 355.5 356 56.5
Ciclev10001813m.g Citrus clementina HOM05D005174 ORTHO05D006784 8.1e-96 354.8 356 56.2
MD15G1352500 Malus domestica HOM05D005174 ORTHO05D006784 8.1e-96 354.8 359 55.7
TPR.G22992 Trifolium pratense HOM05D005174 ORTHO05D006784 1.8e-95 353.6 365 56.7
Sed0012589 Sechium edule HOM05D005174 ORTHO05D006784 4.0e-95 352.4 356 55.3
Nn5g28198 Nelumbo nucifera HOM05D005174 ORTHO05D006784 5.2e-95 352.1 353 55.8
Lsat_1_v5_gn_4_135460 Lactuca sativa HOM05D005174 ORTHO05D006784 6.8e-95 351.7 383 54.6
Aqoxy6G00176 Aquilegia oxysepala HOM05D005174 ORTHO05D006784 8.9e-95 351.3 352 54.5
Peaxi162Scf00051g00623 Petunia axillaris HOM05D005174 ORTHO05D006784 2.0e-94 350.1 361 57.1
QL09p035644 Quercus lobata HOM05D005174 ORTHO05D006784 2.6e-94 349.7 350 57.4
CiPaw.05G223800 Carya illinoinensis HOM05D005174 ORTHO05D006784 3.4e-94 349.4 349 57.6
FvH4_2g26610 Fragaria vesca HOM05D005174 ORTHO05D006784 4.4e-94 349.0 359 56.3
FAN24G0526 Fragaria x ananassa HOM05D005174 ORTHO05D006784 4.4e-94 349.0 359 56.3
vmacro00818 Vaccinium macrocarpon HOM05D005174 ORTHO05D006784 4.4e-94 349.0 341 59.5
Eucgr.L02995 Eucalyptus grandis HOM05D005174 ORTHO05D006784 5.8e-94 348.6 359 55.2
RcHm_v2.0_Chr6g0295461 Rosa chinensis HOM05D005174 ORTHO05D006784 7.6e-94 348.2 359 56.3
arahy.Tifrunner.gnm1.ann1.Z8FB5F Arachis hypogaea HOM05D005174 ORTHO05D006784 9.9e-94 347.8 411 52.8
Sc01g0001320 Simmondsia chinensis HOM05D005174 ORTHO05D006784 1.3e-93 347.4 351 55.6
THA.LOC104806814 Tarenaya hassleriana HOM05D005174 ORTHO05D006784 4.9e-93 345.5 361 53.2
PSO782G4297 Papaver somniferum HOM05D005174 ORTHO05D006784 1.9e-92 343.6 359 53.8
PSO170G4538 Papaver somniferum HOM05D005174 ORTHO05D006784 3.5e-91 339.3 359 53.5
ATR0193G024 Amborella trichopoda HOM05D005174 ORTHO05D006784 4.6e-91 339.0 353 55.0
Sabra05G0132500 Salix brachista HOM05D005174 ORTHO05D006784 3.0e-90 336.3 416 49.8
BcaB04g17581 Brassica carinata HOM05D005174 ORTHO05D006784 8.6e-90 334.7 359 54.3
RhsimUnG0094500 Rhododendron simsii HOM05D005174 ORTHO05D006784 1.9e-89 333.6 367 54.2
Actinidia29457 Actinidia chinensis HOM05D005174 ORTHO05D006784 4.3e-89 332.4 361 54.8
Carub.0001s3538 Capsella rubella HOM05D005174 ORTHO05D006784 4.3e-89 332.4 362 53.6
Sp1g33700 Schrenkiella parvula HOM05D005174 ORTHO05D006784 4.3e-89 332.4 361 54.0
Aa31LG6G9210 Aethionema arabicum HOM05D005174 ORTHO05D006784 7.3e-89 331.6 355 53.2
AT1G44835 Arabidopsis thaliana HOM05D005174 ORTHO05D006784 1.2e-88 330.9 362 53.9
Thhalv10004660m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 1.2e-88 330.9 361 53.7
AL1G52500 Arabidopsis lyrata HOM05D005174 ORTHO05D006784 1.6e-88 330.5 361 53.2
CARHR036100 Cardamine hirsuta HOM05D005174 ORTHO05D006784 2.8e-88 329.7 359 54.3
AUR62042433 Chenopodium quinoa HOM05D005174 ORTHO05D006784 4.7e-88 328.9 355 53.5
Atru.chr13.1416 Acer truncatum HOM05D005174 ORTHO05D006784 6.2e-88 328.6 340 55.3
BraA08t32633Z Brassica rapa HOM05D005174 ORTHO05D006784 8.1e-88 328.2 359 52.9
A08p06300 Brassica napus HOM05D005174 ORTHO05D006784 1.1e-87 327.8 359 52.6
Thhalv10021201m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 1.1e-87 327.8 361 53.2
BcaC07g37283 Brassica carinata HOM05D005174 ORTHO05D006784 1.8e-87 327.0 359 52.1
C08p07120 Brassica napus HOM05D005174 ORTHO05D006784 1.8e-87 327.0 359 52.1
BolC8t47557H Brassica oleracea HOM05D005174 ORTHO05D006784 1.8e-87 327.0 359 52.1
CAN.G1396.5 Capsicum annuum HOM05D005174 ORTHO05D006784 3.1e-87 326.2 294 61.2
AUR62018164 Chenopodium quinoa HOM05D005174 ORTHO05D006784 8.9e-87 324.7 378 50.3
FAN20G1758 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.2e-86 324.3 359 54.6
A10p07300 Brassica napus HOM05D005174 ORTHO05D006784 2.2e-85 320.1 364 52.5
BraSC36t46091Z Brassica rapa HOM05D005174 ORTHO05D006784 2.2e-85 320.1 364 52.5
BcaC08g42881 Brassica carinata HOM05D005174 ORTHO05D006784 2.4e-84 316.6 360 50.8
Nitab4.5_0000633g0140 Nicotiana tabacum HOM05D005174 ORTHO05D006784 2.1e-83 313.5 359 51.8
C06p00970 Brassica napus HOM05D005174 ORTHO05D006784 3.5e-83 312.8 362 50.6
EL10Ac2g03105 Beta vulgaris HOM05D005174 ORTHO05D006784 6.0e-83 312.0 342 53.2
BolC6t35233H Brassica oleracea HOM05D005174 ORTHO05D006784 6.0e-83 312.0 363 50.7
CDE05G2191 Ceratophyllum demersum HOM05D005174 ORTHO05D006784 1.5e-81 307.4 353 47.9
Sc01g0001280 Simmondsia chinensis HOM05D005174 ORTHO05D006784 4.0e-79 299.3 304 54.9
DCAR_017401 Daucus carota HOM05D005174 ORTHO05D006784 3.4e-78 296.2 214 71.5
Os02g0767700 Oryza sativa ssp. japonica HOM05D005174 ORTHO05D006784 1.3e-77 294.3 352 49.4
Zm00001eb193560 Zea mays HOM05D005174 ORTHO05D006784 9.3e-76 288.1 352 48.9
MBI03_g33021_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 6.7e-74 282.0 305 53.1
unitig_82.g26987 Utricularia gibba HOM05D005174 ORTHO05D006784 1.9e-73 280.4 349 49.9
MELO3C032634.2 Cucumis melo HOM05D005174 ORTHO05D006784 2.9e-69 266.5 348 48.3
FAN15G0922 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.1e-68 264.6 397 45.3
FAN27G1282 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.3e-66 257.7 357 46.5
Gohir.A02G073700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 5.6e-65 252.3 363 46.6
Mapoly0010s0001 Marchantia polymorpha HOM05D005174 ORTHO05D006784 4.9e-61 239.2 351 43.3
Pp3c18_22250 Physcomitrium patens HOM05D005174 ORTHO05D006784 2.5e-60 236.9 353 41.9
Ah.10g032020 Amaranthus hybridus HOM05D005174 ORTHO05D006784 7.1e-60 235.3 361 42.4
SEGI_02373 Sequoiadendron giganteum HOM05D005174 ORTHO05D006784 2.7e-59 233.4 312 44.9
HPP92_001042 Vanilla planifolia HOM05D005174 ORTHO05D006784 1.3e-48 198.0 360 38.3
Lj7A337T25 Lonicera japonica HOM05D005174 ORTHO05D006784 3.8e-45 186.4 219 51.6
Haze_00470 Corylus avellana HOM05D005174 ORTHO05D006784 5.0e-45 186.0 110 87.3
Cre10.g425950 Chlamydomonas reinhardtii HOM05D005174 ORTHO05D006784 6.5e-45 185.7 203 47.3
PRCOL_00005180 Prasinoderma coloniale HOM05D005174 ORTHO05D006784 1.4e-39 167.9 179 48.6
MD08G1166300 Malus domestica HOM05D005174 ORTHO05D006784 9.1e-39 165.2 110 76.4
Hund16845 Selenicereus undatus HOM05D005174 ORTHO05D006784 1.3e-37 161.4 105 78.1
Sabra15G0076900 Salix brachista HOM05D000453 ORTHO05D000387 1.8e-34 151.0 136 62.5
FAN20G0512 Fragaria x ananassa HOM05D005174 ORTHO05D006784 3.0e-34 150.2 306 36.6
SMO200G0142 Selaginella moellendorffii HOM05D000188 ORTHO05D007139 1.6e-27 127.9 147 49.7
Haze_00471 Corylus avellana HOM05D005174 ORTHO05D006784 3.6e-27 126.7 217 39.6
Ca_03754_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 7.5e-25 119.0 91 65.9
Glyma.04G251502 Glycine max HOM05D005174 ORTHO05D006784 4.2e-20 103.2 106 56.6
Duzib041G0272 Durio zibethinus HOM05D005174 ORTHO05D015215 7.0e-15 85.9 70 65.7
Sabra02G0067100 Salix brachista HOM05D005174 ORTHO05D006784 1.2e-14 85.1 356 28.7
arahy.Tifrunner.gnm1.ann1.032V6W Arachis hypogaea HOM05D005174 ORTHO05D015215 7.7e-14 82.4 45 91.1
arahy.Tifrunner.gnm1.ann1.PAU1NR Arachis hypogaea HOM05D005174 ORTHO05D015215 7.7e-14 82.4 45 91.1
arahy.Tifrunner.gnm1.ann1.RE5YQ2 Arachis hypogaea HOM05D005174 ORTHO05D015215 7.7e-14 82.4 45 91.1
Ca_03755_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 1.0e-13 82.0 105 50.5
Cfa010764 Carpinus fangiana HOM05D005174 ORTHO05D006784 2.3e-13 80.9 103 44.7
arahy.Tifrunner.gnm1.ann1.S56SQA Arachis hypogaea HOM05D005174 ORTHO05D015215 6.5e-13 79.3 67 61.2
Oeu059427.1 Olea europaea HOM05D005174 ORTHO05D006784 6.5e-13 79.3 52 71.2
arahy.Tifrunner.gnm1.ann1.W2W6PZ Arachis hypogaea HOM05D005174 ORTHO05D015215 1.1e-12 78.6 44 88.6
Potri.002G085700 Populus trichocarpa HOM05D005174 ORTHO05D050453 7.2e-12 75.9 54 72.2
SEGI_30371 Sequoiadendron giganteum HOM05D005174 ORTHO05D050453 1.5e-09 68.2 53 64.2
CiPaw.05G223900 Carya illinoinensis HOM05D005174 ORTHO05D006784 3.4e-09 67.0 94 44.7
MBI04_g30787_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 9.8e-09 65.5 84 42.9
SGA_v2.0_scaffold24G10473 Striga asiatica HOM05D021410 ORTHO05D401290 1.7e-08 64.7 36 83.3
arahy.Tifrunner.gnm1.ann1.9F26EH Arachis hypogaea HOM05D005174 ORTHO05D015215 1.4e-07 61.6 51 66.7


User provided reference genes

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