Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G2443 Salvia bowleyana HOM05D006236 ORTHO05D003486 3.1e-229 798.1 400 100.0
SalBow7G0481 Salvia bowleyana HOM05D006236 ORTHO05D003486 1.1e-98 364.4 200 91.5
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 1.7e-30 137.9 327 32.7
SGA_v2.0_scaffold52G18912 Striga asiatica HOM05D006236 ORTHO05D003486 7.7e-23 112.5 83 61.4
Migut.C01072 Erythranthe guttata HOM05D006236 ORTHO05D003486 1.0e-22 112.1 292 31.2
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 2.9e-14 84.0 132 36.4
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 1.6e-12 78.2 113 38.1
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 1.6e-12 78.2 108 37.0
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 2.8e-12 77.4 118 36.4
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 3.6e-12 77.0 138 36.2
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 4.7e-12 76.6 122 35.2
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 4.7e-12 76.6 157 29.3
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 8.0e-12 75.9 158 27.8
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 1.0e-11 75.5 134 32.8
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 4.0e-11 73.6 128 34.4
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 5.2e-11 73.2 150 31.3
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 1.2e-10 72.0 107 36.4
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 1.2e-10 72.0 124 35.5
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 1.2e-10 72.0 126 35.7
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 1.2e-10 72.0 133 34.6
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 1.5e-10 71.6 132 31.8
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 1.5e-10 71.6 148 29.7
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 2.0e-10 71.2 109 34.9
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 2.6e-10 70.9 130 33.8
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 4.4e-10 70.1 124 31.5
Lj7E351T3 Lonicera japonica HOM05D006236 ORTHO05D003486 5.7e-10 69.7 60 53.3
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 7.5e-10 69.3 337 24.6
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 7.5e-10 69.3 155 29.7
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 1.3e-09 68.6 159 30.8
Solyc04g057970.3 Solanum lycopersicum HOM05D020480 ORTHO05D003486 1.3e-09 68.6 95 34.7
Sopen04g025830 Solanum pennellii HOM05D020480 ORTHO05D003486 1.3e-09 68.6 95 34.7
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 1.3e-09 68.6 122 28.7
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 1.3e-09 68.6 107 34.6
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 2.2e-09 67.8 112 34.8
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 2.9e-09 67.4 109 35.8
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 2.9e-09 67.4 108 31.5
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 2.9e-09 67.4 132 28.8
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 3.7e-09 67.0 126 31.0
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 3.7e-09 67.0 130 30.8
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 3.7e-09 67.0 128 32.8
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 4.9e-09 66.6 110 33.6
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 4.9e-09 66.6 122 32.8
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 4.9e-09 66.6 142 31.0
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 6.4e-09 66.2 157 27.4
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 6.4e-09 66.2 127 33.1
SGA_v2.0_scaffold52G18913 Striga asiatica HOM05D006236 ORTHO05D003486 8.3e-09 65.9 89 39.3
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 1.1e-08 65.5 134 31.3
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 1.1e-08 65.5 154 29.9
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 1.4e-08 65.1 111 33.3
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 1.4e-08 65.1 132 30.3
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 1.4e-08 65.1 139 28.8
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 1.4e-08 65.1 132 32.6
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 1.8e-08 64.7 125 30.4
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 2.4e-08 64.3 133 33.1
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 2.4e-08 64.3 184 30.4
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 3.2e-08 63.9 132 31.8
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 4.1e-08 63.5 113 35.4
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 5.4e-08 63.2 105 32.4
Prupe.3G258400 Prunus persica HOM05D006236 ORTHO05D003486 5.4e-08 63.2 95 34.7
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 7.0e-08 62.8 149 29.5
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 9.2e-08 62.4 135 31.9
CANSAT25G1833 Cannabis sativa HOM05D006236 ORTHO05D003486 1.2e-07 62.0 111 33.3
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 1.2e-07 62.0 124 34.7
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 1.2e-07 62.0 124 33.1
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 1.2e-07 62.0 288 24.0
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 1.2e-07 62.0 117 28.2
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 1.6e-07 61.6 187 25.7
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 1.6e-07 61.6 105 31.4
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.6e-07 61.6 106 34.0
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 2.0e-07 61.2 122 33.6
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 2.7e-07 60.8 110 30.9
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 2.7e-07 60.8 114 36.0
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 3.5e-07 60.5 111 31.5
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.3e-06 58.5 58 44.8
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 1.7e-06 58.2 54 48.1
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 1.7e-06 58.2 54 48.1
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 2.3e-06 57.8 58 44.8
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 2.3e-06 57.8 54 48.1
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 2.3e-06 57.8 175 23.4
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 2.3e-06 57.8 108 28.7
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 3.0e-06 57.4 77 42.9
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 3.9e-06 57.0 120 35.8
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 3.9e-06 57.0 104 35.6
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 3.9e-06 57.0 54 48.1
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 5.0e-06 56.6 148 28.4
Gorai.005G087300 Gossypium raimondii HOM05D006236 ORTHO05D003486 5.0e-06 56.6 116 31.9
CANSAT78G1984 Cannabis sativa HOM05D006236 ORTHO05D003486 6.6e-06 56.2 137 31.4
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 6.6e-06 56.2 148 27.0
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 6.6e-06 56.2 154 30.5
Mapoly0015s0190 Marchantia polymorpha HOM05D006236 ORTHO05D003486 6.6e-06 56.2 123 31.7
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 8.6e-06 55.8 263 25.5
Cpa.g.sc1156.3 Carica papaya HOM05D006236 ORTHO05D003486 8.6e-06 55.8 49 42.9


User provided reference genes

Program Settings