Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 3.6e-217 758.1 412 100.0
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 1.7e-94 350.5 435 52.9
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 7.8e-87 325.1 624 40.1
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 7.3e-85 318.5 624 40.5
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 1.3e-70 271.2 616 37.3
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 3.6e-68 263.1 606 34.7
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 2.0e-66 257.3 619 34.1
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 2.2e-65 253.8 606 34.2
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 1.4e-64 251.1 583 35.3
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 2.1e-63 247.3 583 35.2
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 3.0e-62 243.4 572 33.0
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 8.7e-62 241.9 622 33.4
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.9e-61 240.7 623 33.4
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 2.5e-61 240.4 606 32.2
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 3.3e-61 240.0 601 32.9
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 5.6e-61 239.2 568 34.3
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 2.8e-60 236.9 566 34.1
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 4.8e-60 236.1 616 33.9
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 6.2e-60 235.7 573 33.3
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 8.1e-60 235.3 571 33.5
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 2.4e-59 233.8 569 32.7
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 3.1e-59 233.4 570 32.6
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 3.1e-59 233.4 574 32.2
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 2.0e-58 230.7 562 32.2
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 4.5e-58 229.6 569 33.6
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 1.0e-57 228.4 603 31.8
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 2.9e-57 226.9 565 32.4
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 2.9e-57 226.9 617 32.1
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 1.4e-56 224.6 525 34.7
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 7.1e-56 222.2 591 32.3
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 1.2e-55 221.5 569 33.0
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 6.0e-55 219.2 548 33.0
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 1.3e-54 218.0 562 32.6
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 1.8e-54 217.6 566 32.0
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 3.0e-54 216.9 561 32.1
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 3.0e-54 216.9 566 32.0
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 3.0e-54 216.9 602 30.9
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 5.1e-54 216.1 600 30.5
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.9e-53 214.2 565 32.6
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 3.3e-53 213.4 600 31.2
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 3.3e-53 213.4 572 32.3
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 5.7e-53 212.6 605 30.7
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 9.6e-53 211.8 567 31.2
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 1.3e-52 211.5 608 31.9
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.3e-52 211.5 566 32.5
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 2.8e-52 210.3 566 32.2
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 3.7e-52 209.9 543 33.5
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 6.3e-52 209.1 581 32.0
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 8.2e-52 208.8 569 31.1
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 1.1e-51 208.4 433 37.6
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 1.8e-51 207.6 570 30.9
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 4.1e-51 206.5 566 31.6
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 4.1e-51 206.5 593 31.9
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 5.3e-51 206.1 566 31.1
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 1.2e-50 204.9 526 37.6
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 4.5e-50 203.0 650 29.1
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.7e-49 201.1 566 31.3
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 5.0e-49 199.5 564 30.7
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 5.0e-49 199.5 564 31.0
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 6.5e-49 199.1 565 30.8
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 6.5e-49 199.1 557 32.0
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 1.1e-48 198.4 571 32.0
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 4.2e-48 196.4 564 30.9
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 9.3e-48 195.3 605 28.3
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 1.6e-47 194.5 685 29.9
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 2.7e-47 193.7 583 29.8
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 1.3e-46 191.4 535 30.3
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.3e-46 191.4 191 51.8
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.3e-46 191.4 106 82.1
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 1.8e-46 191.0 581 29.8
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 3.0e-46 190.3 191 51.3
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 3.0e-46 190.3 563 29.5
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 5.1e-46 189.5 193 51.8
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 1.5e-45 188.0 501 34.5
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 2.5e-45 187.2 516 32.0
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 7.4e-45 185.7 606 30.0
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 1.6e-44 184.5 114 77.2
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 2.2e-44 184.1 368 39.1
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 6.3e-44 182.6 548 29.9
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 1.1e-43 181.8 565 28.0
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 1.4e-43 181.4 639 28.6
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 1.4e-43 181.4 115 73.9
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 1.8e-43 181.0 102 78.4
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 4.1e-43 179.9 523 33.3
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 5.3e-43 179.5 606 28.7
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 9.0e-43 178.7 548 29.0
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 9.0e-43 178.7 547 30.3
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 9.0e-43 178.7 603 28.2
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.2e-42 178.3 115 73.0
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 1.2e-42 178.3 130 64.6
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 1.2e-42 178.3 597 27.8
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 1.5e-42 177.9 566 27.2
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 2.0e-42 177.6 115 73.0
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 2.6e-42 177.2 455 33.8
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 3.4e-42 176.8 563 28.4
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 4.5e-42 176.4 116 70.7
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 7.7e-42 175.6 115 70.4
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 1.3e-41 174.9 134 63.4
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 1.7e-41 174.5 600 28.3
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 1.7e-41 174.5 115 68.7
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 1.7e-41 174.5 158 56.3
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 2.9e-41 173.7 326 39.0
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 2.9e-41 173.7 499 31.7
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 3.8e-41 173.3 125 68.0
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 5.0e-41 172.9 563 28.2
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 5.0e-41 172.9 532 30.5
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 5.0e-41 172.9 331 39.6
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 5.0e-41 172.9 115 71.3
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 8.5e-41 172.2 501 32.1
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 1.4e-40 171.4 611 28.3
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 1.9e-40 171.0 484 32.6
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 1.9e-40 171.0 106 74.5
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 2.5e-40 170.6 487 31.4
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 2.5e-40 170.6 104 74.0
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 5.5e-40 169.5 489 31.5
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 5.5e-40 169.5 479 31.7
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 5.5e-40 169.5 550 31.8
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 7.2e-40 169.1 192 45.8
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 7.2e-40 169.1 114 66.7
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 1.2e-39 168.3 115 67.0
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.6e-39 167.9 596 27.7
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 2.1e-39 167.5 499 32.3
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 2.7e-39 167.2 510 31.6
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 1.4e-38 164.9 130 62.3
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 2.3e-38 164.1 106 71.7
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 3.9e-38 163.3 106 70.8
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 5.1e-38 162.9 106 70.8
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 5.1e-38 162.9 106 70.8
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 6.7e-38 162.5 130 61.5
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 8.8e-38 162.2 118 64.4
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 5.7e-37 159.5 130 60.0
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 7.4e-37 159.1 109 67.0
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 7.4e-37 159.1 109 67.0
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 7.4e-37 159.1 109 67.0
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 7.4e-37 159.1 109 67.0
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 7.4e-37 159.1 109 67.0
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 7.4e-37 159.1 507 32.1
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 9.7e-37 158.7 109 66.1
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 1.3e-36 158.3 164 50.0
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 1.8e-35 154.5 130 60.8
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 1.8e-35 154.5 130 60.8
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 1.8e-35 154.5 130 60.8
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 1.8e-35 154.5 130 60.8
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 2.4e-35 154.1 602 25.9
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 3.1e-35 153.7 130 56.2
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 1.2e-34 151.8 89 77.5
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 3.4e-34 150.2 130 54.6
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 4.2e-32 143.3 95 73.7
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 6.1e-31 139.4 112 57.1
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 9.7e-29 132.1 119 53.8
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 4.8e-28 129.8 523 28.3
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 1.6e-26 124.8 118 51.7
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 8.5e-25 119.0 71 78.9
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 1.5e-24 118.2 64 84.4
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 9.4e-24 115.5 322 35.4
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.6e-23 114.8 290 34.5
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 6.1e-23 112.8 373 29.0
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 1.0e-22 112.1 83 65.1
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 4.0e-22 110.2 618 27.0
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 6.7e-22 109.4 62 82.3
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 2.0e-21 107.8 334 30.2
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 9.1e-19 99.0 301 31.6
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 6.8e-14 82.8 269 33.5
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 1.5e-13 81.6 353 27.8
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 5.7e-13 79.7 204 31.4
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 1.1e-11 75.5 97 40.2
SEGI_28594 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 2.4e-11 74.3 306 33.7
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 3.8e-09 67.0 278 29.1
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 1.9e-08 64.7 108 36.1
Ah.11g046900 Amaranthus hybridus HOM05D003971 ORTHO05D004762 3.2e-08 63.9 162 41.4


User provided reference genes

Program Settings