Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 0.0e+00 1285.8 645 100.0
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 6.8e-295 1016.9 627 84.4
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 4.8e-176 622.1 468 69.4
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 8.0e-171 604.7 465 68.8
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 9.2e-167 591.3 469 64.6
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 2.3e-162 576.6 471 63.9
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 3.7e-152 542.7 469 61.6
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 7.1e-143 511.9 478 57.7
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 3.6e-139 499.6 493 55.2
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 3.6e-139 499.6 493 55.2
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 3.6e-139 499.6 486 56.6
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 3.6e-139 499.6 511 55.0
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 8.1e-139 498.4 501 56.1
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 1.4e-138 497.7 473 57.3
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 3.1e-138 496.5 472 56.6
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 7.6e-137 491.9 483 54.9
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 1.4e-135 487.6 475 56.4
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 1.9e-135 487.3 478 56.3
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 1.6e-131 474.2 473 55.6
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 1.6e-131 474.2 472 55.3
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 2.1e-131 473.8 474 53.6
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 2.8e-131 473.4 474 54.9
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 4.7e-131 472.6 486 53.7
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 3.1e-130 469.9 484 54.1
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 6.9e-130 468.8 480 55.6
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 1.5e-129 467.6 472 54.7
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 8.4e-128 461.8 481 52.2
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 2.1e-126 457.2 482 53.1
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 4.6e-126 456.1 480 52.9
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 1.0e-125 454.9 471 51.6
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 1.3e-125 454.5 480 53.1
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 3.9e-125 453.0 470 52.8
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 5.1e-125 452.6 473 53.5
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 5.1e-125 452.6 474 53.4
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 4.3e-124 449.5 469 51.4
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 5.6e-124 449.1 472 51.9
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 5.6e-124 449.1 478 51.0
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 7.3e-124 448.7 493 51.1
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 3.6e-123 446.4 472 52.1
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 8.1e-123 445.3 478 50.4
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 6.9e-122 442.2 471 52.4
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 2.0e-121 440.7 474 51.5
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 3.4e-121 439.9 482 49.6
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 1.4e-119 434.5 499 49.3
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 4.2e-119 433.0 489 50.1
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 5.4e-119 432.6 495 49.9
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 7.1e-119 432.2 475 49.9
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.6e-118 431.0 473 52.0
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 1.6e-118 431.0 473 52.0
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 2.7e-118 430.3 479 48.6
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 7.9e-118 428.7 474 51.3
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.9e-116 424.1 474 50.6
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 5.6e-116 422.5 475 50.3
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 2.1e-115 420.6 468 48.9
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 3.7e-115 419.9 490 49.6
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 1.5e-113 414.5 488 50.0
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 2.6e-113 413.7 467 51.8
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 4.5e-113 412.9 488 48.4
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 5.8e-113 412.5 471 48.6
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 5.5e-111 406.0 494 48.4
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 5.5e-111 406.0 479 48.6
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 1.6e-110 404.4 468 49.6
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 2.7e-110 403.7 471 48.2
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 7.9e-110 402.1 480 47.3
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 7.9e-110 402.1 531 45.0
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 4.3e-108 396.4 486 49.6
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 1.1e-106 391.7 493 47.1
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 1.4e-106 391.3 498 47.4
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 6.9e-106 389.0 468 47.2
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 2.6e-105 387.1 466 49.1
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 4.5e-105 386.3 469 47.8
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 1.7e-104 384.4 463 46.7
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 2.2e-104 384.0 374 55.9
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 1.9e-103 380.9 468 47.0
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 1.9e-103 380.9 471 46.1
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 2.5e-103 380.6 469 47.8
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 2.5e-103 380.6 467 46.5
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 7.1e-103 379.0 470 47.9
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 4.6e-102 376.3 469 46.7
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 1.0e-101 375.2 470 44.9
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 3.0e-101 373.6 465 46.9
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 2.5e-100 370.5 468 46.2
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 7.4e-100 369.0 464 45.5
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 7.4e-100 369.0 464 45.5
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 2.8e-99 367.1 472 44.9
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 8.2e-99 365.5 469 45.6
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 1.1e-98 365.2 468 45.7
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 5.3e-98 362.8 464 45.0
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 6.9e-98 362.5 469 45.6
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 3.4e-97 360.1 466 45.5
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 4.5e-97 359.8 485 46.6
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 1.7e-96 357.8 471 45.4
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 8.5e-96 355.5 487 44.4
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 1.1e-95 355.1 471 45.2
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 1.9e-95 354.4 465 44.3
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 1.2e-94 351.7 498 41.6
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 2.1e-94 350.9 470 44.7
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 6.7e-93 345.9 474 42.2
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 1.9e-92 344.4 460 43.5
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 6.3e-91 339.3 462 41.1
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 5.3e-90 336.3 399 47.4
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 3.8e-88 330.1 500 40.8
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.9e-86 322.4 485 41.0
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 1.5e-84 318.2 470 41.3
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 9.7e-84 315.5 464 41.4
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 3.7e-83 313.5 473 41.2
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 3.7e-83 313.5 471 41.4
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 4.8e-83 313.2 472 39.2
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 1.1e-82 312.0 430 46.3
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 6.5e-80 302.8 470 40.9
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 8.5e-80 302.4 470 40.4
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 9.4e-79 298.9 453 43.3
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.0e-77 293.9 475 39.2
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 5.3e-74 283.1 482 37.1
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 5.3e-74 283.1 463 39.1
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 1.6e-73 281.6 463 38.9
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 2.6e-68 264.2 469 37.5
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.5e-63 247.7 452 36.9
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.7e-62 244.2 452 37.2
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 1.8e-61 241.5 473 35.7
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 9.8e-60 235.7 524 34.5
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.2e-52 212.2 425 34.6
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.5e-52 209.5 425 35.1
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.3e-51 208.8 473 33.2
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 9.2e-50 202.6 455 33.4
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 5.2e-45 186.8 232 44.0
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 2.5e-39 167.9 156 52.6
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.7e-38 163.7 407 33.2
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.7e-38 163.7 407 33.2
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.6e-33 147.1 338 32.2
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 4.7e-30 137.1 166 48.8
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 1.3e-27 129.0 470 27.7
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 1.2e-25 122.5 228 40.8
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 1.0e-24 119.4 497 26.4
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 1.7e-24 118.6 401 28.4
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 6.6e-24 116.7 269 34.6
Peaxi162Scf00132g00037 Petunia axillaris HOM05D004790 ORTHO05D005678 1.1e-21 109.4 451 23.5
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 2.4e-21 108.2 471 26.5
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 4.0e-21 107.5 459 26.4
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 2.6e-20 104.8 492 24.4
Hma1.2p1_0002F.1_g002210 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.2e-17 95.9 297 30.3
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 4.6e-17 94.0 87 57.5
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 3.1e-13 81.3 191 31.9
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 9.0e-13 79.7 91 45.1
Dinv17315 Davidia involucrata HOM05D004790 ORTHO05D005678 2.4e-10 71.6 88 42.0
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 9.3e-10 69.7 72 58.3
Hma1.2p1_0002F.1_g002220 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.2e-09 69.3 79 43.0
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 1.0e-08 66.2 270 26.3
Dinv07566 Davidia involucrata HOM05D004790 ORTHO05D005678 1.7e-08 65.5 90 37.8
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 1.1e-07 62.8 61 39.3
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 5.6e-07 60.5 418 22.2
Dinv07569 Davidia involucrata HOM05D032653 ORTHO05D005678 6.2e-06 57.0 99 34.3


User provided reference genes

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