Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 3.2e-157 558.5 310 100.0
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 2.9e-94 349.4 314 65.3
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 1.4e-88 330.5 206 78.2
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 1.3e-86 323.9 259 66.4
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 6.1e-84 315.1 233 70.8
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 1.4e-83 313.9 202 76.2
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 1.8e-83 313.5 215 73.5
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 2.3e-83 313.2 244 67.6
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 5.2e-83 312.0 241 66.8
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 8.8e-83 311.2 253 65.6
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 8.8e-83 311.2 227 68.7
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 1.1e-82 310.8 198 76.3
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 2.6e-82 309.7 252 65.5
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 7.4e-82 308.1 217 73.3
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 2.8e-81 306.2 200 75.5
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 6.3e-81 305.1 240 65.4
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 1.8e-80 303.5 204 73.5
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 5.3e-80 302.0 204 71.6
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 5.3e-80 302.0 245 64.5
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 1.6e-79 300.4 201 73.1
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 3.5e-79 299.3 206 71.4
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 1.7e-78 297.0 216 68.5
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 1.7e-78 297.0 226 68.1
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 2.9e-78 296.2 200 73.5
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 2.9e-78 296.2 249 61.8
SGA_v2.0_scaffold53G19289 Striga asiatica HOM05D004265 ORTHO05D005175 6.5e-78 295.0 310 56.1
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 8.5e-78 294.7 236 66.1
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 1.5e-77 293.9 221 66.1
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 1.5e-77 293.9 205 71.2
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 1.9e-77 293.5 198 72.7
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 1.9e-77 293.5 219 66.7
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 5.5e-77 292.0 221 67.9
Cc02_g35030 Coffea canephora HOM05D004265 ORTHO05D005175 7.2e-77 291.6 236 66.9
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 7.2e-77 291.6 217 69.6
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 9.4e-77 291.2 227 65.2
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 1.6e-76 290.4 249 61.8
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 3.6e-76 289.3 252 60.7
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 1.8e-75 287.0 216 67.1
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 4.0e-75 285.8 196 69.4
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 6.7e-75 285.0 241 61.0
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 2.0e-74 283.5 248 62.1
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 2.6e-74 283.1 203 67.5
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 2.6e-74 283.1 209 67.0
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 4.4e-74 282.3 207 69.1
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 1.7e-73 280.4 216 66.7
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 4.8e-73 278.9 204 66.2
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 4.8e-73 278.9 211 65.9
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 4.8e-73 278.9 199 71.4
PGR031G2746 Punica granatum HOM05D004265 ORTHO05D005175 1.4e-72 277.3 209 67.5
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 4.1e-72 275.8 252 56.7
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 5.3e-72 275.4 203 66.5
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 9.1e-72 274.6 245 60.8
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 9.1e-72 274.6 204 68.1
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 9.1e-72 274.6 209 66.0
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 2.0e-71 273.5 252 57.5
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 2.7e-71 273.1 203 66.5
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 7.7e-71 271.6 214 64.0
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 1.7e-70 270.4 202 63.4
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 3.8e-70 269.2 202 66.3
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 3.8e-70 269.2 219 62.6
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 5.0e-70 268.9 203 66.0
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 5.0e-70 268.9 209 66.0
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 6.5e-70 268.5 203 64.5
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 1.9e-69 266.9 198 65.2
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 7.2e-69 265.0 232 62.9
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 7.2e-69 265.0 257 57.2
Nn3g16212 Nelumbo nucifera HOM05D004265 ORTHO05D005175 9.4e-69 264.6 233 59.7
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 2.7e-68 263.1 211 64.0
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 2.7e-68 263.1 207 63.8
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 4.7e-68 262.3 237 58.6
Prupe.6G313200 Prunus persica HOM05D004265 ORTHO05D005175 1.4e-67 260.8 200 66.0
Nitab4.5_0000368g0100 Nicotiana tabacum HOM05D004265 ORTHO05D005175 4.0e-67 259.2 254 55.1
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 6.8e-67 258.5 206 63.6
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 6.8e-67 258.5 255 54.9
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 1.2e-66 257.7 194 63.9
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 2.0e-66 256.9 204 64.2
Nitab4.5_0004873g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 3.4e-66 256.1 255 54.1
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 2.8e-65 253.1 180 67.8
Peaxi162Scf00673g00321 Petunia axillaris HOM05D004265 ORTHO05D005175 1.4e-64 250.8 254 52.4
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 2.4e-64 250.0 215 61.4
PGSC0003DMG400002801 Solanum tuberosum HOM05D004265 ORTHO05D005175 5.4e-64 248.8 255 52.5
Lj5P334T30 Lonicera japonica HOM05D004265 ORTHO05D005175 2.7e-63 246.5 186 66.1
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 3.5e-63 246.1 201 63.2
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 3.5e-63 246.1 182 66.5
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 1.7e-62 243.8 190 63.7
Solyc01g100480.3 Solanum lycopersicum HOM05D004265 ORTHO05D005175 2.9e-62 243.0 240 53.8
Sopen01g043990 Solanum pennellii HOM05D004265 ORTHO05D005175 3.8e-62 242.7 202 59.9
FAN05G3791 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.1e-61 241.1 198 61.6
FAN09G1150 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.1e-61 241.1 198 61.6
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.9e-61 240.4 246 57.3
VMungo1383G0172 Vigna mungo HOM05D004265 ORTHO05D005175 4.2e-61 239.2 202 57.9
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 1.6e-60 237.3 199 60.3
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 2.8e-60 236.5 217 57.6
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 3.6e-60 236.1 149 77.2
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 6.1e-60 235.3 174 69.0
BcaC04g22056 Brassica carinata HOM05D004265 ORTHO05D005175 1.8e-59 233.8 211 57.8
BolC9t55323H Brassica oleracea HOM05D004265 ORTHO05D005175 1.8e-59 233.8 211 57.8
FvH4_6g07440 Fragaria vesca HOM05D004265 ORTHO05D005175 1.8e-59 233.8 198 60.1
FAN14G5021 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.8e-59 233.8 198 60.1
Psat0s3400g0040 Pisum sativum HOM05D004265 ORTHO05D005175 2.3e-59 233.4 256 50.0
C09p24060 Brassica napus HOM05D004265 ORTHO05D005175 3.0e-59 233.0 211 57.8
CDE11G0488 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 3.0e-59 233.0 211 57.3
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 4.0e-59 232.6 246 55.7
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 4.0e-59 232.6 246 55.7
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 6.8e-59 231.9 231 55.0
MD04G1193100 Malus domestica HOM05D004265 ORTHO05D005175 1.5e-58 230.7 183 63.4
SEGI_19544 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 6.3e-57 225.3 198 55.1
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 8.3e-57 224.9 240 51.7
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 8.3e-57 224.9 204 56.9
BraA09t37526Z Brassica rapa HOM05D004265 ORTHO05D005175 3.1e-56 223.0 229 52.0
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 3.1e-56 223.0 194 57.2
BcaB07g31123 Brassica carinata HOM05D004265 ORTHO05D005175 9.2e-56 221.5 211 54.5
Thhalv10023634m.g Eutrema salsugineum HOM05D004265 ORTHO05D005175 9.2e-56 221.5 202 57.4
FAN02G3541 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.6e-55 220.7 181 61.9
THA.LOC104816889 Tarenaya hassleriana HOM05D004265 ORTHO05D005175 1.6e-55 220.7 203 57.1
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 3.5e-55 219.5 213 55.4
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 7.8e-55 218.4 213 54.9
A09p19080 Brassica napus HOM05D004265 ORTHO05D005175 2.9e-54 216.5 211 54.5
HPP92_003567 Vanilla planifolia HOM05D004265 ORTHO05D005175 2.1e-52 210.3 242 50.0
Actinidia25851 Actinidia chinensis HOM05D004265 ORTHO05D005175 2.8e-52 209.9 196 59.2
Aa31LG2G11490 Aethionema arabicum HOM05D004265 ORTHO05D005175 3.6e-52 209.5 203 55.2
Oeu016567.1 Olea europaea HOM05D004265 ORTHO05D005175 1.4e-51 207.6 143 74.1
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 1.8e-51 207.2 183 54.6
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 1.3e-49 201.1 173 60.1
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 2.4e-48 196.8 249 46.2
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 2.4e-48 196.8 249 46.2
DCAR_029352 Daucus carota HOM05D004265 ORTHO05D005175 5.4e-48 195.7 183 50.8
Rhsim01G0290900 Rhododendron simsii HOM05D004265 ORTHO05D005175 5.4e-48 195.7 211 50.7
Gohir.A11G293141 Gossypium hirsutum HOM05D004265 ORTHO05D005175 7.0e-48 195.3 206 51.0
Gohir.D11G307566 Gossypium hirsutum HOM05D004265 ORTHO05D005175 7.0e-48 195.3 206 51.0
Gorai.007G338000 Gossypium raimondii HOM05D004265 ORTHO05D005175 7.0e-48 195.3 206 51.0
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 2.0e-47 193.7 225 48.4
Gohir.D11G299703 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.0e-47 193.7 206 50.5
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 3.9e-46 189.5 225 46.2
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis HOM05D004265 ORTHO05D005175 8.6e-46 188.3 197 47.7
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 2.3e-43 180.3 224 48.2
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 5.8e-42 175.6 213 48.8
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 1.3e-41 174.5 148 62.8
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea HOM05D004265 ORTHO05D005175 2.9e-41 173.3 198 46.5
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea HOM05D004265 ORTHO05D005175 2.9e-41 173.3 198 46.5
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 4.9e-41 172.6 217 43.8
Lj2A1205T38 Lonicera japonica HOM05D004265 ORTHO05D005175 8.3e-41 171.8 210 47.1
Dinv10100 Davidia involucrata HOM05D004265 ORTHO05D005175 1.1e-40 171.4 196 49.0
Solyc01g079460.2 Solanum lycopersicum HOM05D004265 ORTHO05D005175 7.0e-40 168.7 208 42.8
Sopen01g031230 Solanum pennellii HOM05D004265 ORTHO05D005175 1.6e-39 167.5 208 42.3
CAN.G100.73 Capsicum annuum HOM05D004265 ORTHO05D005175 2.7e-39 166.8 208 43.8
Lsat_1_v5_gn_3_11681 Lactuca sativa HOM05D004265 ORTHO05D005175 6.0e-39 165.6 134 63.4
Pp3c8_19980 Physcomitrium patens HOM05D004265 ORTHO05D005175 6.0e-39 165.6 184 46.2
PGSC0003DMG400009008 Solanum tuberosum HOM05D004265 ORTHO05D005175 7.8e-39 165.2 199 43.2
Pp3c20_10160 Physcomitrium patens HOM05D004265 ORTHO05D005175 1.7e-38 164.1 242 38.8
Nitab4.5_0003540g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 1.5e-37 161.0 198 44.9
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 1.9e-37 160.6 209 45.5
Mapoly0127s0047 Marchantia polymorpha HOM05D004265 ORTHO05D005175 2.5e-37 160.2 194 44.3
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 3.1e-35 153.3 153 49.0
CsaV3_2G007060 Cucumis sativus L. HOM05D004265 ORTHO05D005175 5.2e-35 152.5 205 41.5
CDE05G2260 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 6.6e-30 135.6 125 56.8
SalBow2G0857 Salvia bowleyana HOM05D004265 ORTHO05D005175 4.3e-29 132.9 191 38.2
Peaxi162Scf00691g00218 Petunia axillaris HOM05D004265 ORTHO05D005175 7.6e-26 122.1 165 38.8
Nitab4.5_0008277g0030 Nicotiana tabacum HOM05D004265 ORTHO05D005175 9.9e-26 121.7 165 38.8
DCAR_018300 Daucus carota HOM05D004265 ORTHO05D005175 4.1e-24 116.3 192 41.1
QL03p013641 Quercus lobata HOM05D004265 ORTHO05D005175 5.2e-19 99.4 74 71.6
Lsat_1_v5_gn_7_81020 Lactuca sativa HOM05D004265 ORTHO05D005175 4.4e-18 96.3 97 54.6
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 1.7e-17 94.4 90 60.0
Thecc.01G291900 Theobroma cacao HOM05D004265 ORTHO05D005175 1.4e-16 91.3 67 62.7
arahy.Tifrunner.gnm1.ann1.F5CMD4 Arachis hypogaea HOM05D004265 ORTHO05D005175 1.9e-16 90.9 157 36.3
CiPaw.14G122400 Carya illinoinensis HOM05D004265 ORTHO05D005175 6.6e-14 82.4 67 70.1
Lsat_1_v5_gn_9_123981 Lactuca sativa HOM05D001336 ORTHO05D001211 3.3e-13 80.1 67 61.2
Lsat_1_v5_gn_6_35861 Lactuca sativa HOM05D004265 ORTHO05D005175 7.3e-13 79.0 62 61.3
Duzib133G1105 Durio zibethinus HOM05D004265 ORTHO05D045180 2.4e-08 63.9 225 21.3


User provided reference genes

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