Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G1688 Salvia bowleyana HOM05D004504 ORTHO05D005324 8.4e-131 470.7 299 100.0
MSTRG.24329 Avicennia marina HOM05D004504 ORTHO05D005324 1.4e-61 240.7 324 56.2
MSTRG.22265 Avicennia marina HOM05D004504 ORTHO05D005324 3.8e-59 232.6 311 51.8
RcHm_v2.0_Chr6g0307761 Rosa chinensis HOM05D004504 ORTHO05D005324 1.6e-57 227.3 289 53.3
COL.COLO4_26483 Corchorus olitorius HOM05D004504 ORTHO05D005324 3.6e-57 226.1 290 52.4
Manes.18G035600 Manihot esculenta HOM05D004504 ORTHO05D005324 3.6e-57 226.1 308 52.6
QL02p005285 Quercus lobata HOM05D004504 ORTHO05D005324 5.2e-56 222.2 296 50.0
Cfa018531 Carpinus fangiana HOM05D004504 ORTHO05D005324 1.5e-55 220.7 274 52.2
Manes.05G172300 Manihot esculenta HOM05D004504 ORTHO05D005324 1.5e-55 220.7 302 48.0
MSTRG.1340 Avicennia marina HOM05D004504 ORTHO05D005324 3.4e-55 219.5 298 59.1
Duzib093G0589 Durio zibethinus HOM05D004504 ORTHO05D005324 3.4e-55 219.5 314 47.5
Thecc.08G010300 Theobroma cacao HOM05D004504 ORTHO05D005324 1.7e-54 217.2 293 50.9
Prupe.1G437500 Prunus persica HOM05D004504 ORTHO05D005324 2.2e-54 216.9 310 49.4
FAN15G1553 Fragaria x ananassa HOM05D004504 ORTHO05D005324 6.3e-54 215.3 301 49.5
FvH4_2g34560 Fragaria vesca HOM05D004504 ORTHO05D005324 1.4e-53 214.2 301 49.8
Duzib116G0149 Durio zibethinus HOM05D004504 ORTHO05D005324 1.8e-53 213.8 302 47.4
Oeu029881.1 Olea europaea HOM05D004504 ORTHO05D005324 1.8e-53 213.8 272 52.2
Potri.014G031100 Populus trichocarpa HOM05D004504 ORTHO05D005324 1.8e-53 213.8 295 47.8
FAN20G0303 Fragaria x ananassa HOM05D004504 ORTHO05D005324 2.4e-53 213.4 297 50.8
Hma1.2p1_0718F.1_g208360 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 2.4e-53 213.4 264 52.3
CsaV3_4G034230 Cucumis sativus L. HOM05D004504 ORTHO05D005324 4.1e-53 212.6 287 49.8
MELO3C016744.2 Cucumis melo HOM05D004504 ORTHO05D005324 1.2e-52 211.1 287 49.5
FAN27G0025 Fragaria x ananassa HOM05D004504 ORTHO05D005324 1.2e-52 211.1 301 49.2
CiPaw.15G061000 Carya illinoinensis HOM05D004504 ORTHO05D005324 1.3e-51 207.6 272 51.1
Hma1.2p1_0982F.1_g243930 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 1.7e-51 207.2 270 54.8
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 2.3e-51 206.8 306 45.8
Haze_17534 Corylus avellana HOM05D004504 ORTHO05D005324 2.9e-51 206.5 318 46.9
Haze_17537 Corylus avellana HOM05D004504 ORTHO05D005324 2.9e-51 206.5 318 46.9
ClCG05G019780 Citrullus lanatus HOM05D004504 ORTHO05D005324 6.6e-51 205.3 292 49.0
Glyma.06G039100 Glycine max HOM05D004504 ORTHO05D005324 1.5e-50 204.1 307 45.9
Sed0018137 Sechium edule HOM05D004504 ORTHO05D005324 1.9e-50 203.8 269 50.6
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 3.3e-50 203.0 306 44.8
TWI36G0477 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 9.5e-50 201.4 268 50.4
Glyma.04G038100 Glycine max HOM05D004504 ORTHO05D005324 1.6e-49 200.7 309 48.2
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 1.4e-48 197.6 295 46.8
Sabra14G0022100 Salix brachista HOM05D004504 ORTHO05D005324 1.8e-48 197.2 284 47.5
Actinidia23268 Actinidia chinensis HOM05D001164 ORTHO05D001031 3.0e-48 196.4 265 56.2
Cc10_g04260 Coffea canephora HOM05D004504 ORTHO05D005324 5.2e-48 195.7 356 42.1
Potri.002G127100 Populus trichocarpa HOM05D004504 ORTHO05D005324 8.9e-48 194.9 295 47.5
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 1.2e-47 194.5 278 51.8
DCAR_012769 Daucus carota HOM05D004504 ORTHO05D005324 1.2e-47 194.5 288 44.4
ClCG08G015770 Citrullus lanatus HOM05D004504 ORTHO05D005324 1.5e-47 194.1 277 47.7
Duzib041G0178 Durio zibethinus HOM05D004504 ORTHO05D005324 1.5e-47 194.1 298 56.0
CiPaw.16G045400 Carya illinoinensis HOM05D004504 ORTHO05D005324 2.0e-47 193.7 270 48.5
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 3.4e-47 193.0 294 46.6
Aqoxy5G01252 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 5.7e-47 192.2 273 52.0
Lsat_1_v5_gn_4_125561 Lactuca sativa HOM05D004504 ORTHO05D005324 7.5e-47 191.8 313 46.3
TWI36G0121 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 3.7e-46 189.5 311 44.7
MBI02_g17324_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 4.9e-46 189.1 284 50.7
MBI02_g02958_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 6.3e-46 188.7 284 50.7
Gorai.009G211200 Gossypium raimondii HOM05D004504 ORTHO05D005324 8.3e-46 188.3 298 45.3
Sabra02G0099600 Salix brachista HOM05D004504 ORTHO05D005324 8.3e-46 188.3 270 48.1
Sed0027328 Sechium edule HOM05D004504 ORTHO05D005324 8.3e-46 188.3 264 46.2
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 1.4e-45 187.6 293 45.1
Gohir.A05G201800 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.4e-45 187.6 297 44.4
HanXRQChr09g0267891 Helianthus annuus HOM05D004504 ORTHO05D005324 1.4e-45 187.6 310 42.3
TAR625G1455 Trochodendron aralioides HOM05D004504 ORTHO05D005324 2.4e-45 186.8 263 53.2
Gohir.D05G204900 Gossypium hirsutum HOM05D004504 ORTHO05D005324 4.1e-45 186.0 297 44.4
MD08G1102600 Malus domestica HOM05D004504 ORTHO05D005324 4.1e-45 186.0 261 49.0
Medtr3g101560 Medicago truncatula HOM05D004504 ORTHO05D005324 4.1e-45 186.0 299 41.8
Glyma.14G082300 Glycine max HOM05D004504 ORTHO05D005324 1.2e-44 184.5 310 47.4
TAR381G0791 Trochodendron aralioides HOM05D004504 ORTHO05D005324 2.0e-44 183.7 275 53.5
Gorai.002G131700 Gossypium raimondii HOM05D004504 ORTHO05D005324 5.9e-44 182.2 264 46.6
HanXRQChr16g0507531 Helianthus annuus HOM05D004504 ORTHO05D005324 1.0e-43 181.4 279 46.6
VMungo0647G0958 Vigna mungo HOM05D004504 ORTHO05D005324 1.0e-43 181.4 288 44.8
Gohir.D01G107300 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.3e-43 181.0 263 46.4
Peaxi162Scf00064g00008 Petunia axillaris HOM05D004504 ORTHO05D005324 1.3e-43 181.0 304 44.7
Migut.N02706 Erythranthe guttata HOM05D004504 ORTHO05D005324 5.0e-43 179.1 278 54.7
Gohir.A01G119100 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.1e-42 177.9 268 47.4
Lj1g0007502 Lotus japonicus HOM05D004504 ORTHO05D005324 1.1e-42 177.9 294 45.9
MBI06_g24649_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 1.1e-42 177.9 275 46.5
Nitab4.5_0001580g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 1.1e-42 177.9 288 44.4
Phvul.001G021300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 1.5e-42 177.6 281 47.3
Sed0026223 Sechium edule HOM05D004504 ORTHO05D005324 5.6e-42 175.6 298 45.6
MD15G1084100 Malus domestica HOM05D004504 ORTHO05D005324 2.1e-41 173.7 261 47.5
AUR62022419 Chenopodium quinoa HOM05D004504 ORTHO05D005324 2.8e-41 173.3 344 41.3
Glyma.17G243000 Glycine max HOM05D004504 ORTHO05D005324 6.1e-41 172.2 293 44.7
Lalb_Chr22g0355171 Lupinus albus HOM05D004504 ORTHO05D005324 8.0e-41 171.8 284 44.0
Lsat_1_v5_gn_6_114061 Lactuca sativa HOM05D004504 ORTHO05D005324 1.8e-40 170.6 299 42.8
Rhsim06G0048600 Rhododendron simsii HOM05D004504 ORTHO05D005324 3.1e-40 169.9 312 52.6
PSO210G2137 Papaver somniferum HOM05D004504 ORTHO05D005324 1.2e-39 167.9 289 50.2
PSO170G6689 Papaver somniferum HOM05D004504 ORTHO05D005324 2.0e-39 167.2 300 43.0
SalBow2G2132 Salvia bowleyana HOM05D004504 ORTHO05D005324 8.3e-38 161.8 129 73.6
Eucgr.F00237 Eucalyptus grandis HOM05D004504 ORTHO05D005324 1.1e-37 161.4 251 43.8
MELO3C010878.2 Cucumis melo HOM05D004504 ORTHO05D005324 1.9e-37 160.6 297 42.8
Peaxi162Scf00252g00123 Petunia axillaris HOM05D004504 ORTHO05D005324 9.2e-37 158.3 286 50.0
Lj5g0012770 Lotus japonicus HOM05D004504 ORTHO05D005324 1.6e-36 157.5 315 39.7
PGR083G0364 Punica granatum HOM05D004504 ORTHO05D005324 1.6e-36 157.5 314 46.2
EL10Ac1g01723 Beta vulgaris HOM05D004504 ORTHO05D005324 2.0e-36 157.1 336 39.3
Lalb_Chr23g0267021 Lupinus albus HOM05D004504 ORTHO05D005324 2.0e-36 157.1 268 43.3
arahy.Tifrunner.gnm1.ann1.2LG1YU Arachis hypogaea HOM05D004504 ORTHO05D005324 2.7e-36 156.8 323 41.8
PGSC0003DMG400008020 Solanum tuberosum HOM05D004504 ORTHO05D005324 1.7e-35 154.1 288 45.8
CDE02G0300 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 2.3e-35 153.7 272 46.3
SHI08291 Sapria himalayana HOM05D004504 ORTHO05D005324 5.0e-35 152.5 275 42.2
Aa31LG9G12800 Aethionema arabicum HOM05D004504 ORTHO05D005324 6.6e-35 152.1 328 39.0
Gohir.A06G017400 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.5e-34 151.0 267 43.8
TPR.G17544 Trifolium pratense HOM05D004504 ORTHO05D005324 1.9e-34 150.6 314 43.6
unitig_899.g15623 Utricularia gibba HOM05D004504 ORTHO05D005324 1.9e-34 150.6 279 42.7
Sopen04g032720 Solanum pennellii HOM05D004504 ORTHO05D005324 2.5e-34 150.2 295 43.4
TPR.G28115 Trifolium pratense HOM05D004504 ORTHO05D005324 2.5e-34 150.2 232 43.1
CAN.G1422.9 Capsicum annuum HOM05D000541 ORTHO05D000137 5.6e-34 149.1 367 34.9
CDE06G1443 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 5.6e-34 149.1 272 46.3
Sed0004281 Sechium edule HOM05D004504 ORTHO05D005324 9.5e-34 148.3 270 41.5
Solyc04g079110.1 Solanum lycopersicum HOM05D004504 ORTHO05D005324 1.6e-33 147.5 320 42.2
RcHm_v2.0_Chr6g0307601 Rosa chinensis HOM05D004504 ORTHO05D005324 3.6e-33 146.4 239 44.8
Medtr1g019750 Medicago truncatula HOM05D004504 ORTHO05D005324 1.4e-32 144.4 316 40.5
PGSC0003DMG400015442 Solanum tuberosum HOM05D004504 ORTHO05D005324 1.4e-32 144.4 272 45.2
AL8G18380 Arabidopsis lyrata HOM05D004504 ORTHO05D005324 5.2e-32 142.5 318 38.7
Dinv35969 Davidia involucrata HOM05D004504 ORTHO05D005324 5.2e-32 142.5 264 48.5
Lalb_Chr24g0399251 Lupinus albus HOM05D004504 ORTHO05D005324 1.2e-31 141.4 244 43.0
Carub.0008s0620 Capsella rubella HOM05D004504 ORTHO05D005324 2.6e-31 140.2 317 38.5
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 2.6e-31 140.2 268 41.0
AT5G42750 Arabidopsis thaliana HOM05D004504 ORTHO05D005324 3.4e-31 139.8 339 38.1
THA.LOC104804561 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 5.8e-31 139.0 269 40.1
Aqoxy6G01353 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 7.5e-31 138.7 307 38.4
unitig_26.g10024 Utricularia gibba HOM05D004504 ORTHO05D005324 7.5e-31 138.7 271 39.5
HPP92_016728 Vanilla planifolia HOM05D004504 ORTHO05D005324 2.9e-30 136.7 278 40.6
Sopen12g030760 Solanum pennellii HOM05D004504 ORTHO05D005324 3.7e-30 136.3 272 42.6
AUR62042173 Chenopodium quinoa HOM05D004504 ORTHO05D005324 8.3e-30 135.2 308 36.0
CAN.G371.30 Capsicum annuum HOM05D004504 ORTHO05D005324 2.4e-29 133.7 301 48.2
Actinidia22620 Actinidia chinensis HOM05D001164 ORTHO05D001031 5.4e-29 132.5 213 51.6
SGA_v2.0_scaffold14G07036 Striga asiatica HOM05D004504 ORTHO05D005324 5.4e-29 132.5 236 41.1
Thhalv10003420m.g Eutrema salsugineum HOM05D004504 ORTHO05D005324 9.2e-29 131.7 318 40.6
BcaB07g30603 Brassica carinata HOM05D004504 ORTHO05D005324 1.2e-28 131.3 347 38.3
Gorai.010G018300 Gossypium raimondii HOM05D004504 ORTHO05D005324 2.7e-28 130.2 268 49.3
BolC2t10378H Brassica oleracea HOM05D004504 ORTHO05D005324 3.5e-28 129.8 348 37.6
GSVIVG01009517001 Vitis vinifera HOM05D004504 ORTHO05D005324 4.6e-28 129.4 123 65.0
A02p27570 Brassica napus HOM05D004504 ORTHO05D005324 6.0e-28 129.0 352 35.8
BraA02t07790Z Brassica rapa HOM05D004504 ORTHO05D005324 6.0e-28 129.0 352 35.8
Psat6g012120 Pisum sativum HOM05D004504 ORTHO05D005324 6.0e-28 129.0 271 38.7
Sc15g0006190 Simmondsia chinensis HOM05D004504 ORTHO05D005324 1.0e-27 128.3 230 50.4
Sc15g0006270 Simmondsia chinensis HOM05D004504 ORTHO05D005324 1.0e-27 128.3 230 50.4
BcaC03g16510 Brassica carinata HOM05D004504 ORTHO05D005324 1.3e-27 127.9 348 37.6
C02p43260 Brassica napus HOM05D004504 ORTHO05D005324 1.3e-27 127.9 348 37.6
Atru.chr13.656 Acer truncatum HOM05D004504 ORTHO05D005324 1.7e-27 127.5 257 40.9
CARHR181660 Cardamine hirsuta HOM05D004504 ORTHO05D005324 3.0e-27 126.7 324 36.1
Oeu057287.1 Olea europaea HOM05D004504 ORTHO05D005324 3.9e-27 126.3 121 65.3
Dinv39324 Davidia involucrata HOM05D004504 ORTHO05D005324 4.3e-26 122.9 80 81.2
CDE02G3707 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 9.5e-26 121.7 273 42.9
PSO541G3526 Papaver somniferum HOM05D004504 ORTHO05D005324 1.8e-24 117.5 265 38.1
Lj4P54T34 Lonicera japonica HOM05D004504 ORTHO05D005324 8.9e-24 115.2 86 72.1
PSO675G2195 Papaver somniferum HOM05D004504 ORTHO05D005324 1.5e-23 114.4 266 38.3
PGR031G2315 Punica granatum HOM05D004504 ORTHO05D005324 2.0e-23 114.0 292 36.0
Nn1g04891 Nelumbo nucifera HOM05D004504 ORTHO05D005324 9.9e-23 111.7 90 65.6
Sp2g07370 Schrenkiella parvula HOM05D004504 ORTHO05D005324 1.3e-22 111.3 325 37.2
THA.LOC104806943 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 6.4e-22 109.0 320 36.6
Nitab4.5_0007986g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 8.3e-22 108.6 225 44.0
SGA_v2.0_scaffold208G41968 Striga asiatica HOM05D004504 ORTHO05D005324 8.3e-22 108.6 299 37.8
CDE09G0998 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.1e-21 108.2 266 36.1
Oeu011558.1 Olea europaea HOM05D004504 ORTHO05D005324 9.2e-21 105.1 104 63.5
unitig_749.g13680 Utricularia gibba HOM05D004504 ORTHO05D005324 6.0e-20 102.4 262 34.0
Oeu044838.1 Olea europaea HOM05D004504 ORTHO05D005324 2.3e-19 100.5 130 54.6
Lj4P774T14 Lonicera japonica HOM05D004504 ORTHO05D005324 1.1e-18 98.2 118 51.7
Eucgr.F02356 Eucalyptus grandis HOM05D004504 ORTHO05D005324 1.9e-18 97.4 288 33.0
Oeu011539.1 Olea europaea HOM05D004504 ORTHO05D005324 4.0e-16 89.7 74 67.6
CDE09G1057 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.4e-13 81.3 267 30.3
unitig_744.g24589 Utricularia gibba HOM05D004504 ORTHO05D005324 9.2e-13 78.6 269 31.6
ATR0100G018 Amborella trichopoda HOM05D004504 ORTHO05D005324 2.3e-11 73.9 123 43.9
THA.LOC109116829 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 2.8e-09 67.0 110 42.7
Zm00001eb315000 Zea mays HOM05D004504 ORTHO05D005324 1.1e-08 65.1 85 49.4
Os09g0459500 Oryza sativa ssp. japonica HOM05D004504 ORTHO05D005324 2.4e-08 63.9 79 51.9
Rhsim04G0205200 Rhododendron simsii HOM05D006303 ORTHO05D008007 2.0e-07 60.8 139 36.7
Nitab4.5_0000260g0090 Nicotiana tabacum HOM05D006303 ORTHO05D008007 2.6e-07 60.5 108 41.7
Peaxi162Scf00437g00041 Petunia axillaris HOM05D006303 ORTHO05D008007 3.4e-07 60.1 87 48.3
Solyc09g075750.1 Solanum lycopersicum HOM05D006303 ORTHO05D008007 3.4e-07 60.1 82 50.0
PGSC0003DMG400031852 Solanum tuberosum HOM05D006303 ORTHO05D008007 3.4e-07 60.1 83 47.0
Lj6C598T9 Lonicera japonica HOM05D006303 ORTHO05D008007 4.4e-07 59.7 87 47.1
Sopen09g030560 Solanum pennellii HOM05D006303 ORTHO05D008007 4.4e-07 59.7 84 46.4
Nitab4.5_0007531g0010 Nicotiana tabacum HOM05D006303 ORTHO05D008007 5.8e-07 59.3 81 48.1
GSVIVG01017928001 Vitis vinifera HOM05D006303 ORTHO05D008007 5.8e-07 59.3 103 45.6
Ah.04g154500 Amaranthus hybridus HOM05D006303 ORTHO05D008007 7.6e-07 58.9 137 35.0
ATR0626G102 Amborella trichopoda HOM05D006303 ORTHO05D008007 7.6e-07 58.9 125 39.2
Lsat_1_v5_gn_5_148441 Lactuca sativa HOM05D006303 ORTHO05D008007 7.6e-07 58.9 338 25.1
Sc13g0004270 Simmondsia chinensis HOM05D006303 ORTHO05D008007 9.9e-07 58.5 92 47.8
CiPaw.02G095400 Carya illinoinensis HOM05D006303 ORTHO05D008007 1.3e-06 58.2 99 42.4
Duzib212G0816 Durio zibethinus HOM05D006303 ORTHO05D008007 1.3e-06 58.2 112 39.3
Manes.03G181100 Manihot esculenta HOM05D006303 ORTHO05D008007 1.3e-06 58.2 336 25.6
Cc03_g03480 Coffea canephora HOM05D006303 ORTHO05D008007 1.7e-06 57.8 78 46.2
Ca_24387_v3 Cicer arietinum L. HOM05D006303 ORTHO05D008007 2.2e-06 57.4 78 47.4
Prupe.1G155600 Prunus persica HOM05D006303 ORTHO05D008007 2.2e-06 57.4 98 42.9
TPR.G37902 Trifolium pratense HOM05D006303 ORTHO05D008007 2.2e-06 57.4 76 47.4
TWI09G0488 Tripterygium wilfordii HOM05D006303 ORTHO05D008007 2.2e-06 57.4 108 39.8
A09p05910 Brassica napus HOM05D006303 ORTHO05D008007 3.8e-06 56.6 128 33.6
COL.COLO4_06194 Corchorus olitorius HOM05D006303 ORTHO05D008007 3.8e-06 56.6 102 38.2
DCAR_027185 Daucus carota HOM05D006303 ORTHO05D008007 6.4e-06 55.8 135 33.3
Lj1g0001361 Lotus japonicus HOM05D006303 ORTHO05D008007 8.4e-06 55.5 353 24.9


User provided reference genes

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