Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G1528 Salvia bowleyana HOM05D000955 ORTHO05D003340 3.4e-58 228.0 108 100.0
CDE08G0020 Ceratophyllum demersum HOM05D000955 ORTHO05D003340 2.8e-12 75.5 70 48.6
Cc10_g04230 Coffea canephora HOM05D000955 ORTHO05D003340 1.1e-11 73.6 69 49.3
Nn5g30250 Nelumbo nucifera HOM05D000955 ORTHO05D003340 1.1e-11 73.6 78 42.3
Os07g0619200 Oryza sativa ssp. japonica HOM05D000955 ORTHO05D003340 1.4e-11 73.2 78 46.2
HanXRQChr09g0267871 Helianthus annuus HOM05D000955 ORTHO05D003340 3.1e-11 72.0 69 46.4
Migut.H00440 Erythranthe guttata HOM05D000955 ORTHO05D003340 4.1e-11 71.6 77 46.8
ECA232G3034 Erigeron canadensis HOM05D000955 ORTHO05D003340 5.3e-11 71.2 69 44.9
Nitab4.5_0007986g0020 Nicotiana tabacum HOM05D000955 ORTHO05D003340 9.1e-11 70.5 69 47.8
Peaxi162Scf00064g00025 Petunia axillaris HOM05D000955 ORTHO05D003340 9.1e-11 70.5 69 49.3
COL.COLO4_26485 Corchorus olitorius HOM05D000955 ORTHO05D003340 1.6e-10 69.7 78 46.2
Oeu004829.1 Olea europaea HOM05D000955 ORTHO05D003340 1.6e-10 69.7 69 49.3
Manes.18G035800 Manihot esculenta HOM05D000955 ORTHO05D003340 2.0e-10 69.3 69 47.8
Nitab4.5_0001580g0040 Nicotiana tabacum HOM05D000955 ORTHO05D003340 2.0e-10 69.3 69 46.4
MBI06_g36647_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 2.6e-10 68.9 78 46.2
Nitab4.5_0000686g0110 Nicotiana tabacum HOM05D000955 ORTHO05D003340 2.6e-10 68.9 78 39.7
Dinv39322 Davidia involucrata HOM05D000955 ORTHO05D003340 4.5e-10 68.2 71 43.7
Gohir.A06G017800 Gossypium hirsutum HOM05D000955 ORTHO05D003340 4.5e-10 68.2 78 43.6
Potri.014G030800 Populus trichocarpa HOM05D000955 ORTHO05D003340 4.5e-10 68.2 69 49.3
Aqoxy5G01248 Aquilegia oxysepala HOM05D000955 ORTHO05D003340 5.9e-10 67.8 81 42.0
MSTRG.1342 Avicennia marina HOM05D000955 ORTHO05D003340 5.9e-10 67.8 80 45.0
Rhsim07G0229500 Rhododendron simsii HOM05D000955 ORTHO05D003340 5.9e-10 67.8 94 39.4
DCAR_008791 Daucus carota HOM05D000955 ORTHO05D003340 7.7e-10 67.4 78 42.3
Migut.C00586 Erythranthe guttata HOM05D000955 ORTHO05D003340 7.7e-10 67.4 69 49.3
Aqoxy6G01348 Aquilegia oxysepala HOM05D000955 ORTHO05D003340 1.0e-09 67.0 68 42.6
MBI02_g02963_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 1.0e-09 67.0 79 43.0
Potri.014G030900 Populus trichocarpa HOM05D000955 ORTHO05D003340 1.0e-09 67.0 77 46.8
Nitab4.5_0006312g0020 Nicotiana tabacum HOM05D000955 ORTHO05D003340 1.3e-09 66.6 69 46.4
DCAR_008792 Daucus carota HOM05D000955 ORTHO05D003340 1.7e-09 66.2 77 44.2
CAN.G1422.10 Capsicum annuum HOM05D000955 ORTHO05D003340 2.2e-09 65.9 70 48.6
Nn1g04889 Nelumbo nucifera HOM05D000955 ORTHO05D003340 2.2e-09 65.9 79 44.3
Eucgr.F00233 Eucalyptus grandis HOM05D000955 ORTHO05D003340 2.9e-09 65.5 78 42.3
Lsat_1_v5_gn_4_125520 Lactuca sativa HOM05D000955 ORTHO05D003340 2.9e-09 65.5 69 42.0
HPP92_004112 Vanilla planifolia HOM05D000955 ORTHO05D003340 2.9e-09 65.5 79 40.5
Eucgr.F00234 Eucalyptus grandis HOM05D000955 ORTHO05D003340 3.8e-09 65.1 77 42.9
Solyc12g088850.1 Solanum lycopersicum HOM05D000955 ORTHO05D003340 3.8e-09 65.1 69 44.9
Sopen12g030740 Solanum pennellii HOM05D000955 ORTHO05D003340 3.8e-09 65.1 69 44.9
Rhsim07G0229100 Rhododendron simsii HOM05D000955 ORTHO05D003340 5.0e-09 64.7 69 46.4
CAN.G1518.2 Capsicum annuum HOM05D000955 ORTHO05D003340 8.5e-09 63.9 78 44.9
COL.COLO4_26486 Corchorus olitorius HOM05D000955 ORTHO05D003340 8.5e-09 63.9 78 42.3
Peaxi162Scf00064g00006 Petunia axillaris HOM05D000955 ORTHO05D003340 8.5e-09 63.9 78 50.0
Rhsim07G0229000 Rhododendron simsii HOM05D000955 ORTHO05D003340 8.5e-09 63.9 108 36.1
Sopen04g032660 Solanum pennellii HOM05D000955 ORTHO05D001429 8.5e-09 63.9 84 39.3
Zm00001eb109460 Zea mays HOM05D000955 ORTHO05D003340 8.5e-09 63.9 81 38.3
ATR0100G031 Amborella trichopoda HOM05D000955 ORTHO05D003340 1.1e-08 63.5 65 44.6
DCAR_008793 Daucus carota HOM05D000955 ORTHO05D003340 1.1e-08 63.5 78 42.3
Lj4C54T13 Lonicera japonica HOM05D000955 ORTHO05D003340 1.1e-08 63.5 96 37.5
Peaxi162Scf01073g00017 Petunia axillaris HOM05D000955 ORTHO05D003340 1.1e-08 63.5 79 44.3
Potri.014G030500 Populus trichocarpa HOM05D000955 ORTHO05D003340 1.1e-08 63.5 69 43.5
SalBow7G3079 Salvia bowleyana HOM05D000955 ORTHO05D003340 1.1e-08 63.5 63 49.2
Aqoxy5G01247 Aquilegia oxysepala HOM05D000955 ORTHO05D003340 1.5e-08 63.2 77 40.3
CAN.G371.24 Capsicum annuum HOM05D000955 ORTHO05D001429 1.9e-08 62.8 84 36.9
COL.COLO4_26487 Corchorus olitorius HOM05D000955 ORTHO05D003340 1.9e-08 62.8 69 44.9
Hma1.2p1_0718F.1_g208350 Hydrangea macrophylla HOM05D000955 ORTHO05D003340 1.9e-08 62.8 70 40.0
Rhsim07G0228900 Rhododendron simsii HOM05D000955 ORTHO05D003340 1.9e-08 62.8 78 42.3
unitig_32.g10766 Utricularia gibba HOM05D000939 ORTHO05D000745 1.9e-08 62.8 69 46.4
Rhsim07G0229400 Rhododendron simsii HOM05D000955 ORTHO05D003340 2.5e-08 62.4 76 43.4
Solyc04g079080.2 Solanum lycopersicum HOM05D000955 ORTHO05D003340 2.5e-08 62.4 69 46.4
Solyc12g088860.2 Solanum lycopersicum HOM05D000955 ORTHO05D003340 2.5e-08 62.4 69 43.5
Sopen04g032690 Solanum pennellii HOM05D000955 ORTHO05D003340 2.5e-08 62.4 69 46.4
Sopen12g030750 Solanum pennellii HOM05D000955 ORTHO05D003340 2.5e-08 62.4 69 43.5
CSS0029458 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D003340 3.2e-08 62.0 78 43.6
Gorai.005G102900 Gossypium raimondii HOM05D000955 ORTHO05D003340 3.2e-08 62.0 78 43.6
Nitab4.5_0000686g0170 Nicotiana tabacum HOM05D000955 ORTHO05D001429 3.2e-08 62.0 66 45.5
SalBow5G5547 Salvia bowleyana HOM05D000955 ORTHO05D003340 3.2e-08 62.0 69 44.9
PGSC0003DMG400007985 Solanum tuberosum HOM05D000955 ORTHO05D003340 3.2e-08 62.0 69 44.9
PGSC0003DMG400008043 Solanum tuberosum HOM05D000955 ORTHO05D001429 3.2e-08 62.0 66 43.9
vmacro21529 Vaccinium macrocarpon HOM05D000955 ORTHO05D003340 3.2e-08 62.0 78 41.0
CAN.G1518.1 Capsicum annuum HOM05D000955 ORTHO05D003340 4.2e-08 61.6 69 43.5
Manes.18G035900 Manihot esculenta HOM05D000955 ORTHO05D003340 4.2e-08 61.6 67 41.8
Nitab4.5_0006068g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 4.2e-08 61.6 66 42.4
Peaxi162Scf00252g00112 Petunia axillaris HOM05D000955 ORTHO05D001429 4.2e-08 61.6 84 39.3
Prupe.1G437300 Prunus persica HOM05D000955 ORTHO05D003340 4.2e-08 61.6 69 44.9
Sabra02G0099500 Salix brachista HOM05D000955 ORTHO05D003340 4.2e-08 61.6 71 42.3
CAN.G371.28 Capsicum annuum HOM05D000955 ORTHO05D003340 5.5e-08 61.2 69 46.4
Potri.002G127000 Populus trichocarpa HOM05D000955 ORTHO05D003340 5.5e-08 61.2 94 37.2
Zm00001eb100840 Zea mays HOM05D000955 ORTHO05D003340 5.5e-08 61.2 89 37.1
Glyma.04G038300 Glycine max HOM05D000955 ORTHO05D003340 7.2e-08 60.8 68 44.1
Gohir.D06G015900 Gossypium hirsutum HOM05D000955 ORTHO05D003340 7.2e-08 60.8 78 42.3
Gorai.010G018500 Gossypium raimondii HOM05D000955 ORTHO05D003340 7.2e-08 60.8 78 42.3
Nitab4.5_0000686g0120 Nicotiana tabacum HOM05D000955 ORTHO05D001429 7.2e-08 60.8 66 43.9
Os09g0458900 Oryza sativa ssp. japonica HOM05D000955 ORTHO05D003340 7.2e-08 60.8 96 36.5
Peaxi162Scf00303g00141 Petunia axillaris HOM05D000955 ORTHO05D001429 7.2e-08 60.8 73 45.2
SalBow5G1664 Salvia bowleyana HOM05D000955 ORTHO05D003340 9.4e-08 60.5 69 43.5
Sopen12g030730 Solanum pennellii HOM05D000955 ORTHO05D001429 9.4e-08 60.5 66 47.0
Nitab4.5_0000686g0100 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.2e-07 60.1 66 43.9
Ciclev10002898m.g Citrus clementina HOM05D000955 ORTHO05D001429 1.6e-07 59.7 68 41.2
Oeu043557.1 Olea europaea HOM05D007843 ORTHO05D003639 1.6e-07 59.7 70 47.1
Oeu043559.1 Olea europaea HOM05D000955 ORTHO05D003340 1.6e-07 59.7 69 40.6
arahy.Tifrunner.gnm1.ann1.LA24B5 Arachis hypogaea HOM05D000955 ORTHO05D003340 2.1e-07 59.3 70 44.3
CAN.G371.25 Capsicum annuum HOM05D000955 ORTHO05D001429 2.1e-07 59.3 85 34.1
CDE10G0229 Ceratophyllum demersum HOM05D000955 ORTHO05D003340 2.1e-07 59.3 91 35.2
Gohir.D06G015700 Gossypium hirsutum HOM05D000955 ORTHO05D003340 2.1e-07 59.3 78 41.0
Nitab4.5_0008115g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.1e-07 59.3 66 42.4
Phvul.009G064500 Phaseolus vulgaris HOM05D000955 ORTHO05D003340 2.1e-07 59.3 68 44.1
Potri.014G030700 Populus trichocarpa HOM05D000955 ORTHO05D003340 2.1e-07 59.3 68 42.6
CDE06G0816 Ceratophyllum demersum HOM05D000955 ORTHO05D003340 2.7e-07 58.9 69 40.6
ECA246G2186 Erigeron canadensis HOM05D000955 ORTHO05D003340 2.7e-07 58.9 78 42.3
Glyma.06G039400 Glycine max HOM05D000955 ORTHO05D003340 2.7e-07 58.9 68 44.1
Nitab4.5_0000686g0180 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.7e-07 58.9 66 42.4
Nitab4.5_0001847g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.7e-07 58.9 66 40.9
Nitab4.5_0002468g0040 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.7e-07 58.9 66 40.9
ATR0100G012 Amborella trichopoda HOM05D000955 ORTHO05D003340 3.6e-07 58.5 63 46.0
CAN.G371.23 Capsicum annuum HOM05D000955 ORTHO05D001429 3.6e-07 58.5 66 42.4
ECA246G3551 Erigeron canadensis HOM05D000955 ORTHO05D003340 3.6e-07 58.5 71 40.8
Gorai.010G018700 Gossypium raimondii HOM05D000955 ORTHO05D003340 3.6e-07 58.5 78 41.0
Nitab4.5_0001101g0030 Nicotiana tabacum HOM05D000955 ORTHO05D001429 3.6e-07 58.5 66 40.9
Nitab4.5_0013573g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 3.6e-07 58.5 66 40.9
PGSC0003DMG400015414 Solanum tuberosum HOM05D000955 ORTHO05D001429 3.6e-07 58.5 66 47.0
Zm00001eb193710 Zea mays HOM05D000955 ORTHO05D003340 3.6e-07 58.5 67 41.8
Aqoxy5G01246 Aquilegia oxysepala HOM05D000955 ORTHO05D003340 4.7e-07 58.2 78 34.6
ClCG05G019810 Citrullus lanatus HOM05D000955 ORTHO05D001429 4.7e-07 58.2 63 42.9
Gohir.A06G017600 Gossypium hirsutum HOM05D000955 ORTHO05D003340 4.7e-07 58.2 78 41.0
Psat6g013560 Pisum sativum HOM05D000955 ORTHO05D003340 4.7e-07 58.2 70 41.4
Sabra14G0021800 Salix brachista HOM05D000955 ORTHO05D003340 4.7e-07 58.2 69 43.5
PGSC0003DMG400004460 Solanum tuberosum HOM05D000955 ORTHO05D001429 4.7e-07 58.2 66 42.4
Migut.K00765 Erythranthe guttata HOM05D000955 ORTHO05D003340 6.1e-07 57.8 69 39.1
Eucgr.F00235 Eucalyptus grandis HOM05D000955 ORTHO05D003340 6.1e-07 57.8 66 42.4
Manes.18G036000 Manihot esculenta HOM05D000955 ORTHO05D003340 6.1e-07 57.8 67 41.8
Peaxi162Scf00064g00002 Petunia axillaris HOM05D000955 ORTHO05D003340 6.1e-07 57.8 69 44.9
MSTRG.3423 Avicennia marina HOM05D000955 ORTHO05D003340 8.0e-07 57.4 104 33.7
Gohir.A06G017700 Gossypium hirsutum HOM05D000955 ORTHO05D003340 8.0e-07 57.4 79 41.8
Nitab4.5_0000453g0120 Nicotiana tabacum HOM05D000955 ORTHO05D003340 8.0e-07 57.4 69 43.5
Ciclev10003536m.g Citrus clementina HOM05D000955 ORTHO05D001429 1.0e-06 57.0 66 43.9
RcHm_v2.0_Chr5g0048521 Rosa chinensis HOM05D000955 ORTHO05D003340 1.0e-06 57.0 69 42.0
Atru.chr3.343 Acer truncatum HOM05D000955 ORTHO05D003340 1.4e-06 56.6 79 36.7
Actinidia22622 Actinidia chinensis HOM05D000955 ORTHO05D001429 1.4e-06 56.6 64 43.8
HanXRQChr02g0039431 Helianthus annuus HOM05D000955 ORTHO05D003340 1.4e-06 56.6 69 42.0
MBI02_g02964_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 1.4e-06 56.6 69 39.1
Medtr1g019720 Medicago truncatula HOM05D000955 ORTHO05D003340 1.4e-06 56.6 70 41.4
Sabra14G0021600 Salix brachista HOM05D000955 ORTHO05D003340 1.4e-06 56.6 81 40.7
Thecc.08G010100 Theobroma cacao HOM05D000955 ORTHO05D003340 1.4e-06 56.6 78 39.7
Migut.H00439 Erythranthe guttata HOM05D000955 ORTHO05D003340 1.8e-06 56.2 70 41.4
Psat6g013520 Pisum sativum HOM05D000955 ORTHO05D003340 1.8e-06 56.2 70 41.4
CDE10G0233 Ceratophyllum demersum HOM05D000955 ORTHO05D003340 2.3e-06 55.8 69 37.7
Gorai.010G018800 Gossypium raimondii HOM05D000955 ORTHO05D003340 2.3e-06 55.8 78 41.0
Sed0018620 Sechium edule HOM05D000955 ORTHO05D001429 2.3e-06 55.8 66 40.9
unitig_748.g8402 Utricularia gibba HOM05D000955 ORTHO05D003340 2.3e-06 55.8 69 40.6
HPP92_016724 Vanilla planifolia HOM05D000955 ORTHO05D003340 2.3e-06 55.8 69 43.5
Atru.chr13.674 Acer truncatum HOM05D000955 ORTHO05D001429 3.0e-06 55.5 104 29.8
Medtr1g019715 Medicago truncatula HOM05D000955 ORTHO05D003340 3.0e-06 55.5 70 41.4
Solyc01g150126.1 Solanum lycopersicum HOM05D000955 ORTHO05D001429 3.0e-06 55.5 66 40.9
TPR.G17533 Trifolium pratense HOM05D000955 ORTHO05D003340 3.0e-06 55.5 71 39.4
Gohir.A06G018100 Gossypium hirsutum HOM05D000955 ORTHO05D003340 4.0e-06 55.1 79 39.2
Gohir.A06G018101 Gossypium hirsutum HOM05D000955 ORTHO05D001429 4.0e-06 55.1 63 39.7
Hma1.2p1_0982F.1_g243960 Hydrangea macrophylla HOM05D000955 ORTHO05D001429 4.0e-06 55.1 66 40.9
Solyc12g088840.1 Solanum lycopersicum HOM05D000955 ORTHO05D001429 4.0e-06 55.1 66 43.9
Sopen01g015530 Solanum pennellii HOM05D000955 ORTHO05D001429 4.0e-06 55.1 66 40.9
Gohir.D06G016000 Gossypium hirsutum HOM05D000955 ORTHO05D003340 5.2e-06 54.7 78 39.7
Gohir.D06G016100 Gossypium hirsutum HOM05D000955 ORTHO05D003340 5.2e-06 54.7 78 39.7
Gohir.D06G016400 Gossypium hirsutum HOM05D000955 ORTHO05D001429 5.2e-06 54.7 63 39.7
HanXRQChr05g0137741 Helianthus annuus HOM05D000955 ORTHO05D003340 5.2e-06 54.7 64 40.6
SalBow7G0951 Salvia bowleyana HOM05D000955 ORTHO05D003340 5.2e-06 54.7 91 37.4
Sopen07g012140 Solanum pennellii HOM05D000955 ORTHO05D001429 5.2e-06 54.7 66 37.9
Cfa018537 Carpinus fangiana HOM05D000955 ORTHO05D001429 6.7e-06 54.3 88 37.5
Gohir.D02G091750 Gossypium hirsutum HOM05D000955 ORTHO05D003340 6.7e-06 54.3 78 39.7
vmacro04455 Vaccinium macrocarpon HOM05D000955 ORTHO05D003340 6.7e-06 54.3 89 36.0
Atru.chr13.681 Acer truncatum HOM05D000955 ORTHO05D001429 8.8e-06 53.9 64 40.6
CAN.G1518.8 Capsicum annuum HOM05D000955 ORTHO05D001429 8.8e-06 53.9 66 47.0
Ca_13297_v3 Cicer arietinum L. HOM05D000955 ORTHO05D003340 8.8e-06 53.9 70 41.4
MELO3C016746.2 Cucumis melo HOM05D000955 ORTHO05D001429 8.8e-06 53.9 63 41.3
Glyma.06G039300 Glycine max HOM05D000955 ORTHO05D003340 8.8e-06 53.9 68 42.6
Medtr1g019640 Medicago truncatula HOM05D000955 ORTHO05D001429 8.8e-06 53.9 63 38.1
Peaxi162Scf01890g00029 Petunia axillaris HOM05D000955 ORTHO05D003340 8.8e-06 53.9 81 40.7
Psat6g013640 Pisum sativum HOM05D000955 ORTHO05D003340 8.8e-06 53.9 70 40.0
Sopen04g032650 Solanum pennellii HOM05D000955 ORTHO05D001429 8.8e-06 53.9 66 39.4
Thecc.01G054500 Theobroma cacao HOM05D000955 ORTHO05D003340 8.8e-06 53.9 70 37.1
TAR628G1637 Trochodendron aralioides HOM05D000955 ORTHO05D003340 8.8e-06 53.9 69 36.2


User provided reference genes

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