Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G1512 Salvia bowleyana HOM05D005716 ORTHO05D007885 2.9e-183 645.2 345 100.0
Migut.H01369 Erythranthe guttata HOM05D005716 ORTHO05D007885 2.9e-135 485.7 248 92.7
SGA_v2.0_scaffold106G30642 Striga asiatica HOM05D005716 ORTHO05D007885 9.3e-134 480.7 251 90.8
MSTRG.13250 Avicennia marina HOM05D005716 ORTHO05D007885 7.9e-133 477.6 251 90.8
Aqoxy4G00105 Aquilegia oxysepala HOM05D005716 ORTHO05D007885 2.3e-132 476.1 249 91.2
PGSC0003DMG400008287 Solanum tuberosum HOM05D005716 ORTHO05D007885 6.7e-132 474.6 252 90.5
CANSAT80G0786 Cannabis sativa HOM05D005716 ORTHO05D007885 1.5e-131 473.4 249 90.8
QL05p058825 Quercus lobata HOM05D005716 ORTHO05D007885 2.5e-131 472.6 248 90.7
Atru.chr10.1272 Acer truncatum HOM05D005716 ORTHO05D007885 3.3e-131 472.2 250 90.0
PGR042G3684 Punica granatum HOM05D005716 ORTHO05D007885 4.3e-131 471.9 249 90.8
QL05p058849 Quercus lobata HOM05D005716 ORTHO05D007885 7.4e-131 471.1 248 90.3
CAN.G650.23 Capsicum annuum HOM05D005716 ORTHO05D007885 9.6e-131 470.7 252 90.1
Lj1A1186G50 Lonicera japonica HOM05D005716 ORTHO05D007885 9.6e-131 470.7 249 90.0
Sabra02G0185400 Salix brachista HOM05D005716 ORTHO05D007885 9.6e-131 470.7 252 89.3
Sopen02g019750 Solanum pennellii HOM05D005716 ORTHO05D007885 9.6e-131 470.7 252 90.1
TAR627G0480 Trochodendron aralioides HOM05D005716 ORTHO05D007885 1.3e-130 470.3 249 90.0
Eucgr.E02383 Eucalyptus grandis HOM05D005716 ORTHO05D007885 1.6e-130 469.9 247 90.3
Solyc02g070670.4 Solanum lycopersicum HOM05D005716 ORTHO05D007885 2.1e-130 469.5 252 89.7
Aa31LG10G6910 Aethionema arabicum HOM05D005716 ORTHO05D007885 2.8e-130 469.2 251 88.8
MD10G1263700 Malus domestica HOM05D005716 ORTHO05D007885 2.8e-130 469.2 249 90.4
AT2G34470 Arabidopsis thaliana HOM05D005716 ORTHO05D007885 3.7e-130 468.8 249 90.0
BolC4t27848H Brassica oleracea HOM05D005716 ORTHO05D007885 3.7e-130 468.8 250 88.8
Thhalv10017058m.g Eutrema salsugineum HOM05D005716 ORTHO05D007885 3.7e-130 468.8 251 89.2
Carub.0004s1614 Capsella rubella HOM05D005716 ORTHO05D007885 4.8e-130 468.4 273 84.2
Eucgr.E02408 Eucalyptus grandis HOM05D005716 ORTHO05D007885 4.8e-130 468.4 247 89.9
GSVIVG01021429001 Vitis vinifera HOM05D005716 ORTHO05D007885 4.8e-130 468.4 252 87.7
AL4G30440 Arabidopsis lyrata HOM05D005716 ORTHO05D007885 6.3e-130 468.0 251 88.8
CARHR128550 Cardamine hirsuta HOM05D005716 ORTHO05D007885 6.3e-130 468.0 251 89.2
Cc09_g09370 Coffea canephora HOM05D005716 ORTHO05D007885 8.2e-130 467.6 249 90.4
Manes.17G068800 Manihot esculenta HOM05D005716 ORTHO05D007885 8.2e-130 467.6 249 89.2
Peaxi162Scf00022g00310 Petunia axillaris HOM05D005716 ORTHO05D007885 8.2e-130 467.6 252 87.7
C04p63810 Brassica napus HOM05D005716 ORTHO05D007885 1.1e-129 467.2 251 88.0
BraA04t18144Z Brassica rapa HOM05D005716 ORTHO05D007885 1.1e-129 467.2 251 88.0
unitig_32.g11441 Utricularia gibba HOM05D005716 ORTHO05D007885 1.1e-129 467.2 247 90.3
Nitab4.5_0005219g0060 Nicotiana tabacum HOM05D005716 ORTHO05D007885 1.4e-129 466.8 252 88.1
Rhsim07G0173200 Rhododendron simsii HOM05D005716 ORTHO05D007885 1.4e-129 466.8 262 86.3
CDE02G4127 Ceratophyllum demersum HOM05D005716 ORTHO05D007885 1.8e-129 466.5 250 88.8
Thecc.06G152400 Theobroma cacao HOM05D005716 ORTHO05D007885 2.4e-129 466.1 249 89.6
EL10Ac8g19740 Beta vulgaris HOM05D005716 ORTHO05D007885 4.1e-129 465.3 248 89.9
Ciclev10016173m.g Citrus clementina HOM05D005716 ORTHO05D007885 4.1e-129 465.3 249 88.0
CsaV3_1G032590 Cucumis sativus L. HOM05D005716 ORTHO05D007885 5.3e-129 464.9 251 88.8
TWI09G1196 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 5.3e-129 464.9 249 89.2
Duzib235G0716 Durio zibethinus HOM05D005716 ORTHO05D007885 6.9e-129 464.5 249 88.8
Nn3g20701 Nelumbo nucifera HOM05D005716 ORTHO05D007885 6.9e-129 464.5 252 88.1
Sc05g0006370 Simmondsia chinensis HOM05D005716 ORTHO05D007885 6.9e-129 464.5 248 88.7
CiPaw.09G125500 Carya illinoinensis HOM05D005716 ORTHO05D007885 9.0e-129 464.2 246 89.8
Sp4g16740 Schrenkiella parvula HOM05D005716 ORTHO05D007885 9.0e-129 464.2 248 88.7
BcaB06g28772 Brassica carinata HOM05D005716 ORTHO05D007885 1.2e-128 463.8 249 88.4
ATR0585G042 Amborella trichopoda HOM05D005716 ORTHO05D007885 1.5e-128 463.4 275 86.9
DCAR_005122 Daucus carota HOM05D005716 ORTHO05D007885 1.5e-128 463.4 249 89.2
RcHm_v2.0_Chr5g0013751 Rosa chinensis HOM05D005716 ORTHO05D007885 1.5e-128 463.4 250 88.8
MD05G1285700 Malus domestica HOM05D005716 ORTHO05D007885 2.0e-128 463.0 249 89.2
HanXRQChr08g0230021 Helianthus annuus HOM05D005716 ORTHO05D007885 3.4e-128 462.2 249 89.2
arahy.Tifrunner.gnm1.ann1.16PV68 Arachis hypogaea HOM05D005716 ORTHO05D007885 4.5e-128 461.8 249 88.4
arahy.Tifrunner.gnm1.ann1.MD42KV Arachis hypogaea HOM05D005716 ORTHO05D007885 4.5e-128 461.8 249 88.4
Gohir.D10G040400 Gossypium hirsutum HOM05D005716 ORTHO05D007885 4.5e-128 461.8 251 88.4
COL.COLO4_31094 Corchorus olitorius HOM05D005716 ORTHO05D007885 5.9e-128 461.5 249 88.8
Potri.002G243500 Populus trichocarpa HOM05D005716 ORTHO05D007885 5.9e-128 461.5 252 87.7
Potri.002G243700 Populus trichocarpa HOM05D005716 ORTHO05D007885 5.9e-128 461.5 252 87.7
Lalb_Chr07g0188621 Lupinus albus HOM05D005716 ORTHO05D007885 7.6e-128 461.1 251 88.0
Gorai.011G042600 Gossypium raimondii HOM05D005716 ORTHO05D007885 1.0e-127 460.7 251 88.0
Ca_18267_v3 Cicer arietinum L. HOM05D005716 ORTHO05D007885 1.7e-127 459.9 249 88.0
Oeu030916.2 Olea europaea HOM05D005716 ORTHO05D007885 1.7e-127 459.9 267 84.3
FvH4_3g05780 Fragaria vesca HOM05D005716 ORTHO05D007885 2.2e-127 459.5 250 88.4
FAN11G1575 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.2e-127 459.5 250 88.4
FAN21G0047 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.2e-127 459.5 250 88.4
Lsat_1_v5_gn_1_96721 Lactuca sativa HOM05D005716 ORTHO05D007885 2.2e-127 459.5 251 88.0
Actinidia07685 Actinidia chinensis HOM05D005716 ORTHO05D007885 2.9e-127 459.1 249 89.2
FAN16G2159 Fragaria x ananassa HOM05D005716 ORTHO05D007885 3.8e-127 458.8 250 88.4
Medtr4g096770 Medicago truncatula HOM05D005716 ORTHO05D007885 5.0e-127 458.4 250 88.0
ECA232G4567 Erigeron canadensis HOM05D005716 ORTHO05D007885 6.5e-127 458.0 249 88.0
Prupe.4G079000 Prunus persica HOM05D005716 ORTHO05D007885 6.5e-127 458.0 249 88.4
THA.LOC104812667 Tarenaya hassleriana HOM05D005716 ORTHO05D007885 6.5e-127 458.0 249 87.1
TPR.G4903 Trifolium pratense HOM05D005716 ORTHO05D007885 1.1e-126 457.2 250 87.2
PSO017G0333 Papaver somniferum HOM05D005716 ORTHO05D007885 1.4e-126 456.8 270 87.0
MBI07_g26370_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 1.9e-126 456.4 249 88.4
MBI07_g15285_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 2.5e-126 456.1 249 88.4
AUR62027525 Chenopodium quinoa HOM05D005716 ORTHO05D007885 4.2e-126 455.3 244 90.6
Glyma.08G084800 Glycine max HOM05D005716 ORTHO05D007885 5.5e-126 454.9 249 87.6
Psat7g090160 Pisum sativum HOM05D005716 ORTHO05D007885 5.5e-126 454.9 247 87.9
TWI09G0986 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 7.2e-126 454.5 243 89.3
Phvul.002G193800 Phaseolus vulgaris HOM05D005716 ORTHO05D007885 9.3e-126 454.1 250 86.8
SEGI_04817 Sequoiadendron giganteum HOM05D005716 ORTHO05D007885 9.3e-126 454.1 249 86.3
HPP92_010050 Vanilla planifolia HOM05D005716 ORTHO05D007885 9.3e-126 454.1 248 85.9
Dinv32271 Davidia involucrata HOM05D005716 ORTHO05D007885 1.2e-125 453.8 242 89.7
TWI53G0431 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 3.6e-125 452.2 245 88.6
VMungo0251G2847 Vigna mungo HOM05D005716 ORTHO05D007885 1.3e-124 450.3 250 86.0
PSO478G1410 Papaver somniferum HOM05D005716 ORTHO05D007885 4.1e-121 438.7 272 84.6
Sed0010647 Sechium edule HOM05D005716 ORTHO05D007885 9.1e-121 437.6 251 84.1
Mapoly0128s0016 Marchantia polymorpha HOM05D005716 ORTHO05D007885 1.2e-120 437.2 251 82.5
SMO353G0068 Selaginella moellendorffii HOM05D005716 ORTHO05D007885 4.6e-117 425.2 246 82.1
Pp3c24_19130 Physcomitrium patens HOM05D005716 ORTHO05D007885 7.9e-117 424.5 239 83.7
MELO3C002721.2 Cucumis melo HOM05D005716 ORTHO05D007885 3.9e-116 422.2 224 90.2
Os05g0565200 Oryza sativa ssp. japonica HOM05D005716 ORTHO05D007885 1.1e-115 420.6 249 83.1
vmacro17882 Vaccinium macrocarpon HOM05D005716 ORTHO05D007885 2.0e-115 419.9 346 64.2
Cpa.g.sc166.24 Carica papaya HOM05D005716 ORTHO05D007885 9.7e-115 417.5 261 80.1
Zm00001eb343840 Zea mays HOM05D005716 ORTHO05D007885 2.2e-114 416.4 228 89.5
AagrBONN_evm.TU.Sc2ySwM_117.3588 Anthoceros agrestis HOM05D005716 ORTHO05D007885 2.0e-112 409.8 242 81.4
ClCG03G007040 Citrullus lanatus HOM05D005716 ORTHO05D007885 5.9e-112 408.3 252 79.4
CBR_g38955 Chara braunii HOM05D005716 ORTHO05D007885 1.4e-110 403.7 248 77.4
CSS0037137 Camellia sinensis var. sinensis HOM05D005716 ORTHO05D007885 4.1e-105 385.6 201 91.5
Haze_05577 Corylus avellana HOM05D005716 ORTHO05D007885 6.3e-98 361.7 191 92.7
MCO04G141 Micromonas commoda HOM05D005716 ORTHO05D007885 3.5e-96 355.9 244 71.7
Hma1.2p1_0286F.1_g114150 Hydrangea macrophylla HOM05D005716 ORTHO05D007885 3.6e-93 345.9 189 89.9
Nitab4.5_0001655g0090 Nicotiana tabacum HOM05D005716 ORTHO05D007885 6.1e-85 318.5 171 91.2
RcHm_v2.0_Chr5g0013741 Rosa chinensis HOM05D005716 ORTHO05D007885 1.4e-84 317.4 171 90.1
PSO017G6742 Papaver somniferum HOM05D005716 ORTHO05D007885 9.8e-83 311.2 168 89.9
Hund21524 Selenicereus undatus HOM05D005716 ORTHO05D007885 2.2e-82 310.1 181 85.6
Gohir.A10G039600 Gossypium hirsutum HOM05D005716 ORTHO05D007885 4.9e-82 308.9 163 89.6
A04p06350 Brassica napus HOM05D005716 ORTHO05D007885 2.3e-79 300.1 183 81.4
PRCOL_00002216 Prasinoderma coloniale HOM05D005716 ORTHO05D007885 7.5e-75 285.0 185 75.7
FAN17G1884 Fragaria x ananassa HOM05D005716 ORTHO05D007885 8.3e-74 281.6 164 84.1
FAN23G0273 Fragaria x ananassa HOM05D005716 ORTHO05D007885 3.2e-73 279.6 164 82.3
FAN25G2810 Fragaria x ananassa HOM05D005716 ORTHO05D007885 9.2e-73 278.1 164 83.5
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 4.6e-72 275.8 145 93.1
C04p39880 Brassica napus HOM05D005716 ORTHO05D007885 1.8e-68 263.8 147 88.4
BolC4t25559H Brassica oleracea HOM05D005716 ORTHO05D007885 1.2e-67 261.2 155 84.5
FAN02G1132 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.6e-67 260.0 213 65.3
BraA04t16339Z Brassica rapa HOM05D005716 ORTHO05D007885 1.7e-66 257.3 155 83.2
FAN25G0382 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.2e-66 256.9 172 74.4
AUR62030221 Chenopodium quinoa HOM05D005716 ORTHO05D007885 1.1e-65 254.6 146 84.9
RcHm_v2.0_Chr5g0013721 Rosa chinensis HOM05D005716 ORTHO05D007885 5.6e-62 242.3 156 78.2
RcHm_v2.0_Chr5g0013731 Rosa chinensis HOM05D005716 ORTHO05D007885 4.9e-58 229.2 148 78.4
FAN02G0019 Fragaria x ananassa HOM05D005716 ORTHO05D007885 5.2e-52 209.1 151 70.9
Haze_26810 Corylus avellana HOM05D005716 ORTHO05D164461 1.2e-51 208.0 189 54.0
Dinv30725 Davidia involucrata HOM05D005716 ORTHO05D007885 2.9e-50 203.4 141 73.8
MSTRG.14769 Avicennia marina HOM05D005716 ORTHO05D007885 7.8e-40 168.7 93 87.1
AUR62030223 Chenopodium quinoa HOM05D005716 ORTHO05D044022 1.3e-37 161.4 167 55.1
FAN08G0336 Fragaria x ananassa HOM05D005716 ORTHO05D044022 1.5e-30 137.9 76 88.2
arahy.Tifrunner.gnm1.ann1.8LN2Z6 Arachis hypogaea HOM05D005716 ORTHO05D087704 7.6e-27 125.6 129 55.0
VMungo1309G0118 Vigna mungo HOM05D005716 ORTHO05D437644 1.1e-25 121.7 71 81.7
Dinv30726 Davidia involucrata HOM05D005716 ORTHO05D014961 2.4e-25 120.6 58 87.9
CAN.G94.3 Capsicum annuum HOM05D005716 ORTHO05D115662 1.6e-24 117.9 93 65.6
C05p14270 Brassica napus HOM05D013073 ORTHO05D014961 8.4e-18 95.5 55 78.2
C06p00300 Brassica napus HOM05D013073 ORTHO05D014961 2.5e-17 94.0 55 76.4
BcaC08g42818 Brassica carinata HOM05D013073 ORTHO05D014961 1.1e-14 85.1 50 76.0
A04p26400 Brassica napus HOM05D005716 ORTHO05D099386 2.2e-13 80.9 46 76.1
SalBow4G1561 Salvia bowleyana HOM05D000072 ORTHO05D000026 1.1e-09 68.6 47 93.6


User provided reference genes

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