Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 5.3e-142 507.7 259 100.0
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 1.1e-83 313.9 233 70.8
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 9.6e-83 310.8 233 70.4
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 1.8e-81 306.6 233 69.5
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 1.2e-80 303.9 253 65.2
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 8.7e-76 287.7 251 63.7
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 2.1e-74 283.1 230 66.1
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 3.5e-69 265.8 235 61.3
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 4.6e-69 265.4 235 60.4
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 4.6e-69 265.4 235 60.4
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 7.9e-69 264.6 235 60.9
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 5.1e-68 261.9 235 60.0
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 2.5e-67 259.6 238 59.7
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 9.6e-67 257.7 235 59.6
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 9.6e-67 257.7 234 60.3
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 2.6e-64 249.6 234 59.4
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 3.4e-64 249.2 241 56.8
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 7.6e-64 248.1 238 57.1
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.0e-63 247.7 233 58.4
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 2.2e-63 246.5 234 59.0
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 1.4e-62 243.8 241 57.3
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 1.9e-62 243.4 236 57.6
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 2.5e-62 243.0 238 59.7
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 2.1e-61 240.0 237 57.0
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 2.1e-61 240.0 239 58.2
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 7.9e-61 238.0 236 54.7
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.9e-59 233.4 223 57.4
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.9e-59 233.4 246 52.8
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 5.7e-59 231.9 249 53.4
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 5.7e-59 231.9 245 52.2
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 5.7e-59 231.9 240 55.8
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 7.4e-59 231.5 236 55.1
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 9.7e-59 231.1 235 54.9
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 9.7e-59 231.1 243 56.4
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 1.3e-58 230.7 242 55.4
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 4.8e-58 228.8 236 53.0
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 8.2e-58 228.0 245 53.1
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 8.2e-58 228.0 245 53.1
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.1e-57 227.6 242 54.1
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 1.8e-57 226.9 247 50.6
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 1.8e-57 226.9 247 50.6
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 2.4e-57 226.5 233 53.6
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 3.1e-57 226.1 238 51.3
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 4.1e-57 225.7 242 52.5
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 5.3e-57 225.3 246 52.0
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 5.3e-57 225.3 169 62.1
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 6.9e-57 224.9 232 53.4
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 6.9e-57 224.9 230 53.0
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 6.9e-57 224.9 231 53.2
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 9.0e-57 224.6 245 51.0
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.5e-56 223.8 169 61.5
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 1.5e-56 223.8 226 54.9
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 2.0e-56 223.4 236 53.8
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 2.0e-56 223.4 239 53.6
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 2.0e-56 223.4 169 61.5
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 2.6e-56 223.0 244 51.6
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 2.6e-56 223.0 236 53.4
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 4.5e-56 222.2 241 50.2
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 5.9e-56 221.9 186 59.1
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 5.9e-56 221.9 183 60.1
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 5.9e-56 221.9 233 52.8
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 7.7e-56 221.5 241 52.3
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 7.7e-56 221.5 241 52.3
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 7.7e-56 221.5 245 51.4
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 1.0e-55 221.1 237 51.9
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 1.0e-55 221.1 230 51.3
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 1.3e-55 220.7 238 52.9
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 1.3e-55 220.7 233 51.9
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 1.3e-55 220.7 234 51.7
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.7e-55 220.3 240 51.7
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.7e-55 220.3 248 50.0
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 2.2e-55 219.9 241 50.6
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 2.9e-55 219.5 183 58.5
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 2.9e-55 219.5 248 50.8
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 2.9e-55 219.5 230 52.6
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 5.0e-55 218.8 236 53.0
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 5.0e-55 218.8 236 53.0
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.0e-55 218.8 191 56.5
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 5.0e-55 218.8 245 49.8
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 6.5e-55 218.4 176 59.1
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 6.5e-55 218.4 244 50.8
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 8.5e-55 218.0 241 51.5
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 1.1e-54 217.6 236 51.7
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 1.1e-54 217.6 230 51.7
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 1.1e-54 217.6 230 51.7
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.4e-54 217.2 169 59.8
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 1.4e-54 217.2 234 51.7
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 1.4e-54 217.2 238 51.3
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 1.9e-54 216.9 238 51.3
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 1.9e-54 216.9 171 59.1
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 2.5e-54 216.5 237 51.1
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 2.5e-54 216.5 169 61.5
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 2.5e-54 216.5 238 51.3
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 3.2e-54 216.1 169 60.9
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 3.2e-54 216.1 233 51.9
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 4.2e-54 215.7 235 50.6
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 4.2e-54 215.7 233 51.1
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 5.5e-54 215.3 232 50.0
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 9.4e-54 214.5 238 50.8
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 9.4e-54 214.5 238 50.8
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 9.4e-54 214.5 241 50.2
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 1.2e-53 214.2 171 57.9
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 2.7e-53 213.0 244 49.2
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 4.6e-53 212.2 169 60.4
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 4.6e-53 212.2 235 51.9
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 7.9e-53 211.5 231 51.9
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 1.0e-52 211.1 241 49.0
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 3.9e-52 209.1 242 49.6
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 5.1e-52 208.8 233 48.9
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 5.1e-52 208.8 233 50.6
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 6.7e-52 208.4 237 50.2
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 5.7e-51 205.3 169 58.6
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 1.3e-50 204.1 178 57.3
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 1.7e-50 203.8 235 49.4
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 2.8e-50 203.0 155 60.6
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 3.7e-50 202.6 234 51.7
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 6.3e-50 201.8 163 57.7
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 6.3e-50 201.8 226 49.1
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 1.4e-49 200.7 169 58.0
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 3.1e-49 199.5 238 47.5
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 3.1e-49 199.5 233 47.6
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 5.3e-49 198.7 235 47.2
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 9.1e-49 198.0 167 55.1
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 4.5e-48 195.7 226 50.9
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 5.9e-48 195.3 239 46.9
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 7.7e-48 194.9 145 64.8
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 1.0e-47 194.5 235 48.1
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 6.5e-47 191.8 235 46.8
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 1.9e-46 190.3 166 53.6
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 1.9e-46 190.3 226 47.3
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 5.5e-46 188.7 209 47.4
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 2.7e-45 186.4 252 47.2
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.7e-45 185.7 140 62.1
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 4.7e-45 185.7 236 46.2
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 7.9e-45 184.9 175 53.7
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 1.0e-44 184.5 223 46.2
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 8.8e-44 181.4 236 42.4
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 6.3e-42 175.3 247 44.9
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 5.3e-41 172.2 233 45.1
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.1e-37 160.2 134 53.7
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 4.7e-37 159.1 155 54.2
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 1.4e-36 157.5 152 55.3
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 2.9e-31 139.8 105 61.9
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.9e-30 137.1 140 51.4
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 2.7e-29 133.3 196 39.3
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 1.4e-28 131.0 167 39.5
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 2.0e-27 127.1 112 52.7
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 7.5e-27 125.2 211 39.3
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 1.1e-25 121.3 224 35.3
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 8.8e-20 101.7 204 32.8
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.2e-16 91.3 76 55.3
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 3.3e-14 83.2 149 34.9
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 8.9e-12 75.1 74 48.6
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 1.5e-11 74.3 88 43.2
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 8.3e-10 68.6 115 44.3
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 8.6e-07 58.5 59 44.1
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 8.6e-07 58.5 59 44.1


User provided reference genes

Program Settings