Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G1363 Salvia bowleyana HOM05D003130 ORTHO05D003547 1.4e-50 202.6 96 100.0
SalBow7G1595 Salvia bowleyana HOM05D003130 ORTHO05D003547 1.6e-46 189.1 105 88.6
MSTRG.14241 Avicennia marina HOM05D003130 ORTHO05D003547 1.0e-29 133.3 77 76.6
Hma1.2p1_0050F.1_g029010 Hydrangea macrophylla HOM05D003130 ORTHO05D003547 1.5e-28 129.4 72 77.8
unitig_0.g2277 Utricularia gibba HOM05D003130 ORTHO05D003547 1.5e-28 129.4 77 72.7
Gohir.A01G051200 Gossypium hirsutum HOM05D003130 ORTHO05D003547 4.3e-28 127.9 73 72.6
SGA_v2.0_scaffold47G17804 Striga asiatica HOM05D003130 ORTHO05D003547 4.3e-28 127.9 77 75.3
Duzib213G0586 Durio zibethinus HOM05D003130 ORTHO05D003547 5.6e-28 127.5 73 72.6
Potri.011G107600 Populus trichocarpa HOM05D003130 ORTHO05D003547 5.6e-28 127.5 73 76.7
PSO170G0675 Papaver somniferum HOM05D003130 ORTHO05D003547 7.3e-28 127.1 79 68.4
Lj1A826G63 Lonicera japonica HOM05D003130 ORTHO05D003547 9.5e-28 126.7 72 76.4
MD03G1244700 Malus domestica HOM05D003130 ORTHO05D003547 9.5e-28 126.7 73 76.7
MD03G1244800 Malus domestica HOM05D003130 ORTHO05D003547 9.5e-28 126.7 73 76.7
GSVIVG01014167001 Vitis vinifera HOM05D003130 ORTHO05D003547 9.5e-28 126.7 72 75.0
MBI07_g00462_MAGBIO Magnolia biondii HOM05D003130 ORTHO05D003547 1.2e-27 126.3 78 70.5
PSO079G0057 Papaver somniferum HOM05D003130 ORTHO05D003547 1.2e-27 126.3 78 69.2
Potri.012G110400 Populus trichocarpa HOM05D003130 ORTHO05D003547 1.2e-27 126.3 73 75.3
Manes.03G099600 Manihot esculenta HOM05D003130 ORTHO05D003547 1.6e-27 125.9 73 74.0
Potri.001G387100 Populus trichocarpa HOM05D003130 ORTHO05D003547 1.6e-27 125.9 73 72.6
Potri.003G026800 Populus trichocarpa HOM05D003130 ORTHO05D003547 1.6e-27 125.9 73 72.6
Sabra16G0254600 Salix brachista HOM05D003130 ORTHO05D003547 1.6e-27 125.9 73 72.6
Cc05_g10920 Coffea canephora HOM05D003130 ORTHO05D003547 2.1e-27 125.6 72 75.0
Haze_09254 Corylus avellana HOM05D003130 ORTHO05D003547 2.1e-27 125.6 72 76.4
PSO423G0175 Papaver somniferum HOM05D003130 ORTHO05D003547 2.1e-27 125.6 78 69.2
Gohir.D01G041000 Gossypium hirsutum HOM05D003130 ORTHO05D003547 2.8e-27 125.2 73 69.9
Aqoxy4G00223 Aquilegia oxysepala HOM05D003130 ORTHO05D003547 3.6e-27 124.8 72 70.8
COL.COLO4_17512 Corchorus olitorius HOM05D003130 ORTHO05D003547 3.6e-27 124.8 73 71.2
PGR083G1989 Punica granatum HOM05D003130 ORTHO05D003547 3.6e-27 124.8 72 72.2
Thecc.07G126300 Theobroma cacao HOM05D003130 ORTHO05D003547 3.6e-27 124.8 73 72.6
Gorai.002G051200 Gossypium raimondii HOM05D003130 ORTHO05D003547 4.7e-27 124.4 72 70.8
Lsat_1_v5_gn_9_100580 Lactuca sativa HOM05D003130 ORTHO05D003547 4.7e-27 124.4 78 69.2
Manes.15G096800 Manihot esculenta HOM05D003130 ORTHO05D003547 4.7e-27 124.4 73 72.6
PSO782G2947 Papaver somniferum HOM05D003130 ORTHO05D003547 4.7e-27 124.4 78 67.9
SalBow7G4576 Salvia bowleyana HOM05D003130 ORTHO05D003547 4.7e-27 124.4 77 70.1
Sc15g0000080 Simmondsia chinensis HOM05D003130 ORTHO05D003547 4.7e-27 124.4 72 73.6
CSS0012460 Camellia sinensis var. sinensis HOM05D003130 ORTHO05D003547 6.2e-27 124.0 73 72.6
CANSAT35G0714 Cannabis sativa HOM05D003130 ORTHO05D003547 6.2e-27 124.0 80 66.2
CiPaw.11G157200 Carya illinoinensis HOM05D003130 ORTHO05D003547 6.2e-27 124.0 72 75.0
Eucgr.F01296 Eucalyptus grandis HOM05D003130 ORTHO05D003547 6.2e-27 124.0 72 72.2
Eucgr.F01299 Eucalyptus grandis HOM05D003130 ORTHO05D003547 6.2e-27 124.0 72 72.2
Actinidia12592 Actinidia chinensis HOM05D003130 ORTHO05D003547 8.0e-27 123.6 73 72.6
THA.LOC104813997 Tarenaya hassleriana HOM05D003130 ORTHO05D003547 8.0e-27 123.6 83 66.3
Migut.H02016 Erythranthe guttata HOM05D003130 ORTHO05D003547 1.1e-26 123.2 80 70.0
Lalb_Chr20g0109171 Lupinus albus HOM05D003130 ORTHO05D003547 1.1e-26 123.2 71 74.6
vmacro11956 Vaccinium macrocarpon HOM05D003130 ORTHO05D003547 1.1e-26 123.2 71 76.1
Ciclev10022857m.g Citrus clementina HOM05D003130 ORTHO05D003547 1.4e-26 122.9 78 66.7
Glyma.13G268000 Glycine max HOM05D003130 ORTHO05D003547 1.4e-26 122.9 80 65.0
Oeu036486.2 Olea europaea HOM05D003130 ORTHO05D003547 1.4e-26 122.9 77 66.2
Carub.0002s2554 Capsella rubella HOM05D003130 ORTHO05D003547 1.8e-26 122.5 79 68.4
Prupe.4G159900 Prunus persica HOM05D003130 ORTHO05D003547 1.8e-26 122.5 73 72.6
Ca_03949_v3 Cicer arietinum L. HOM05D003130 ORTHO05D003547 3.1e-26 121.7 77 68.8
Lsat_1_v5_gn_7_102180 Lactuca sativa HOM05D003130 ORTHO05D003547 3.1e-26 121.7 77 70.1
Nn3g21072 Nelumbo nucifera HOM05D003130 ORTHO05D003547 4.0e-26 121.3 72 73.6
Thecc.07G126200 Theobroma cacao HOM05D003130 ORTHO05D003547 4.0e-26 121.3 79 67.1
TAR627G0271 Trochodendron aralioides HOM05D003130 ORTHO05D003547 4.0e-26 121.3 72 70.8
Cpa.g.sc77.51 Carica papaya HOM05D003130 ORTHO05D003547 5.2e-26 120.9 72 69.4
Phvul.005G080700 Phaseolus vulgaris HOM05D003130 ORTHO05D003547 5.2e-26 120.9 80 65.0
AL262U10012 Arabidopsis lyrata HOM05D003130 ORTHO05D003547 6.8e-26 120.6 84 64.3
AL2G39070 Arabidopsis lyrata HOM05D003130 ORTHO05D003547 6.8e-26 120.6 84 64.3
Ciclev10020872m.g Citrus clementina HOM05D003130 ORTHO05D003547 6.8e-26 120.6 73 67.1
RcHm_v2.0_Chr5g0030241 Rosa chinensis HOM05D003130 ORTHO05D003547 6.8e-26 120.6 73 69.9
RcHm_v2.0_Chr5g0030431 Rosa chinensis HOM05D003130 ORTHO05D003547 6.8e-26 120.6 73 69.9
ECA240G1349 Erigeron canadensis HOM05D003130 ORTHO05D003547 8.9e-26 120.2 78 69.2
Migut.M00712 Erythranthe guttata HOM05D003130 ORTHO05D003547 8.9e-26 120.2 81 69.1
Thhalv10018738m.g Eutrema salsugineum HOM05D003130 ORTHO05D003547 8.9e-26 120.2 84 63.1
HanXRQChr15g0495171 Helianthus annuus HOM05D003130 ORTHO05D003547 1.2e-25 119.8 78 66.7
AT1G78660 Arabidopsis thaliana HOM05D003130 ORTHO05D003547 1.5e-25 119.4 84 63.1
Aa31LG4G2310 Aethionema arabicum HOM05D003130 ORTHO05D003547 2.0e-25 119.0 79 65.8
CARHR072190 Cardamine hirsuta HOM05D003130 ORTHO05D003547 2.0e-25 119.0 84 61.9
CiPaw.11G156700 Carya illinoinensis HOM05D003130 ORTHO05D003547 2.0e-25 119.0 72 72.2
Sp5g33740 Schrenkiella parvula HOM05D003130 ORTHO05D003547 2.0e-25 119.0 79 67.1
SpUn0074_0020 Schrenkiella parvula HOM05D003130 ORTHO05D003547 2.0e-25 119.0 79 67.1
AUR62019606 Chenopodium quinoa HOM05D003130 ORTHO05D003547 2.6e-25 118.6 78 65.4
Ciclev10020608m.g Citrus clementina HOM05D003130 ORTHO05D003547 2.6e-25 118.6 72 68.1
Thhalv10018776m.g Eutrema salsugineum HOM05D003130 ORTHO05D003547 2.6e-25 118.6 79 69.6
EL10Ac4g08383 Beta vulgaris HOM05D003130 ORTHO05D003547 3.4e-25 118.2 72 68.1
Migut.H02009 Erythranthe guttata HOM05D003130 ORTHO05D003547 3.4e-25 118.2 78 66.7
SpUn0074_0050 Schrenkiella parvula HOM05D003130 ORTHO05D003547 3.4e-25 118.2 73 74.0
Hma1.2p1_1650F.1_g295670 Hydrangea macrophylla HOM05D003130 ORTHO05D003547 4.4e-25 117.9 72 69.4
Carub.0002s2551 Capsella rubella HOM05D003130 ORTHO05D003547 5.8e-25 117.5 84 63.1
AUR62037582 Chenopodium quinoa HOM05D003130 ORTHO05D003547 7.5e-25 117.1 78 64.1
AT1G78680 Arabidopsis thaliana HOM05D003130 ORTHO05D003547 9.8e-25 116.7 79 67.1
Medtr2g075760 Medicago truncatula HOM05D003130 ORTHO05D003547 9.8e-25 116.7 77 64.9
Psat5g236280 Pisum sativum HOM05D003130 ORTHO05D003547 9.8e-25 116.7 77 66.2
VMungo1080G1321 Vigna mungo HOM05D003130 ORTHO05D003547 9.8e-25 116.7 79 63.3
Migut.H02014 Erythranthe guttata HOM05D003130 ORTHO05D003547 1.3e-24 116.3 75 70.7
TWI39G0119 Tripterygium wilfordii HOM05D003130 ORTHO05D003547 1.3e-24 116.3 72 69.4
PGSC0003DMG400035974 Solanum tuberosum HOM05D003130 ORTHO05D003547 1.7e-24 115.9 72 68.1
C06p52560 Brassica napus HOM05D003130 ORTHO05D003547 2.2e-24 115.5 79 67.1
BraA07t31900Z Brassica rapa HOM05D003130 ORTHO05D003547 2.2e-24 115.5 79 67.1
CARHR072210 Cardamine hirsuta HOM05D003130 ORTHO05D003547 2.2e-24 115.5 79 65.8
Lj1g0011966 Lotus japonicus HOM05D003130 ORTHO05D003547 2.2e-24 115.5 72 68.1
Lj3g0027506 Lotus japonicus HOM05D003130 ORTHO05D003547 2.2e-24 115.5 72 68.1
Medtr2g075770 Medicago truncatula HOM05D003130 ORTHO05D003547 2.2e-24 115.5 77 64.9
RcHm_v2.0_Chr5g0030171 Rosa chinensis HOM05D003130 ORTHO05D003547 2.2e-24 115.5 75 69.3
DCAR_019604 Daucus carota HOM05D003130 ORTHO05D003547 2.9e-24 115.2 72 68.1
Nn6g34459 Nelumbo nucifera HOM05D003130 ORTHO05D003547 2.9e-24 115.2 72 69.4
AL262U10016 Arabidopsis lyrata HOM05D003130 ORTHO05D003547 3.7e-24 114.8 79 65.8
Nitab4.5_0000788g0020 Nicotiana tabacum HOM05D003130 ORTHO05D003547 3.7e-24 114.8 78 64.1
Peaxi162Scf00692g00317 Petunia axillaris HOM05D003130 ORTHO05D003547 3.7e-24 114.8 72 68.1
Nitab4.5_0006663g0030 Nicotiana tabacum HOM05D003130 ORTHO05D003547 6.4e-24 114.0 72 68.1
PGSC0003DMG400007066 Solanum tuberosum HOM05D003130 ORTHO05D003547 6.4e-24 114.0 72 65.3
CiPaw.11G156900 Carya illinoinensis HOM05D003130 ORTHO05D003547 8.3e-24 113.6 72 69.4
ECA236G4062 Erigeron canadensis HOM05D003130 ORTHO05D003547 8.3e-24 113.6 78 62.8
MELO3C025645.2 Cucumis melo HOM05D003130 ORTHO05D003547 1.1e-23 113.2 72 65.3
Dinv15006 Davidia involucrata HOM05D003130 ORTHO05D003547 1.1e-23 113.2 65 73.8
Medtr2g075780 Medicago truncatula HOM05D003130 ORTHO05D003547 1.1e-23 113.2 77 63.6
AL2G39084 Arabidopsis lyrata HOM05D003130 ORTHO05D003547 1.4e-23 112.8 79 64.6
Cfa019522 Carpinus fangiana HOM05D001036 ORTHO05D001852 1.4e-23 112.8 66 75.8
BcaC03g15835 Brassica carinata HOM05D003130 ORTHO05D003547 1.9e-23 112.5 79 62.0
A02p22320 Brassica napus HOM05D003130 ORTHO05D003547 1.9e-23 112.5 79 62.0
A07p43930 Brassica napus HOM05D003130 ORTHO05D003547 1.9e-23 112.5 79 64.6
C02p35860 Brassica napus HOM05D003130 ORTHO05D003547 1.9e-23 112.5 79 62.0
BolC2t09599H Brassica oleracea HOM05D003130 ORTHO05D003547 1.9e-23 112.5 79 62.0
BraA02t07236Z Brassica rapa HOM05D003130 ORTHO05D003547 1.9e-23 112.5 79 62.0
BcaB05g25151 Brassica carinata HOM05D003130 ORTHO05D003547 2.4e-23 112.1 79 60.8
FAN21G2254 Fragaria x ananassa HOM05D003130 ORTHO05D003547 2.4e-23 112.1 64 76.6
Sopen07g030560 Solanum pennellii HOM05D003130 ORTHO05D003547 2.4e-23 112.1 72 66.7
AT1G78670 Arabidopsis thaliana HOM05D003130 ORTHO05D003547 3.2e-23 111.7 72 70.8
Nitab4.5_0000347g0200 Nicotiana tabacum HOM05D003130 ORTHO05D003547 3.2e-23 111.7 72 65.3
BcaB03g16026 Brassica carinata HOM05D003130 ORTHO05D003547 4.1e-23 111.3 82 63.4
Carub.0002s2553 Capsella rubella HOM05D003130 ORTHO05D003547 5.4e-23 110.9 71 71.8
CsaV3_4G033040 Cucumis sativus L. HOM05D003130 ORTHO05D003547 9.2e-23 110.2 72 63.9
Solyc07g062270.3 Solanum lycopersicum HOM05D003130 ORTHO05D003547 9.2e-23 110.2 71 64.8
Solyc07g062280.3 Solanum lycopersicum HOM05D003130 ORTHO05D003547 9.2e-23 110.2 72 66.7
HPP92_006383 Vanilla planifolia HOM05D003130 ORTHO05D003547 9.2e-23 110.2 71 66.2
CARHR072200 Cardamine hirsuta HOM05D003130 ORTHO05D003547 1.2e-22 109.8 72 69.4
Lalb_Chr25g0285721 Lupinus albus HOM05D003130 ORTHO05D003547 1.2e-22 109.8 77 63.6
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 1.6e-22 109.4 62 79.0
Sopen07g030550 Solanum pennellii HOM05D003130 ORTHO05D003547 1.6e-22 109.4 71 64.8
AL262U10014 Arabidopsis lyrata HOM05D003130 ORTHO05D003547 2.1e-22 109.0 71 70.4
AL2G39082 Arabidopsis lyrata HOM05D003130 ORTHO05D003547 2.1e-22 109.0 71 70.4
Gorai.002G051600 Gossypium raimondii HOM05D003130 ORTHO05D003547 2.1e-22 109.0 73 63.0
arahy.Tifrunner.gnm1.ann1.F86IGW Arachis hypogaea HOM05D003130 ORTHO05D003547 4.6e-22 107.8 71 64.8
Nitab4.5_0000383g0060 Nicotiana tabacum HOM05D003130 ORTHO05D003547 7.8e-22 107.1 72 62.5
SpUn0074_0040 Schrenkiella parvula HOM05D003130 ORTHO05D003547 1.0e-21 106.7 72 66.7
RcHm_v2.0_Chr5g0030511 Rosa chinensis HOM05D003130 ORTHO05D003547 1.3e-21 106.3 66 69.7
ATR0127G004 Amborella trichopoda HOM05D003130 ORTHO05D003547 2.3e-21 105.5 67 68.7
BcaC08g47462 Brassica carinata HOM05D002832 ORTHO05D007530 3.0e-21 105.1 66 72.7
BraA07t31898Z Brassica rapa HOM05D003130 ORTHO05D003547 5.1e-21 104.4 72 66.7
Rhsim06G0210400 Rhododendron simsii HOM05D003130 ORTHO05D003547 1.1e-20 103.2 111 46.8
TPR.G16064 Trifolium pratense HOM05D003130 ORTHO05D003547 1.9e-20 102.4 77 57.1
A07p43920 Brassica napus HOM05D003130 ORTHO05D003547 2.5e-20 102.1 72 65.3
RcHm_v2.0_Chr5g0030341 Rosa chinensis HOM05D003130 ORTHO05D003547 2.5e-20 102.1 62 71.0
PGSC0003DMG400021256 Solanum tuberosum HOM05D003130 ORTHO05D003547 2.5e-20 102.1 73 61.6
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 4.3e-20 101.3 62 69.4
CsaV3_4G033050 Cucumis sativus L. HOM05D003130 ORTHO05D003547 4.3e-20 101.3 71 57.7
Ca_03950_v3 Cicer arietinum L. HOM05D003130 ORTHO05D003547 9.5e-20 100.1 77 54.5
Solyc10g007410.4 Solanum lycopersicum HOM05D003130 ORTHO05D003547 9.5e-20 100.1 73 58.9
Sopen10g003240 Solanum pennellii HOM05D003130 ORTHO05D003547 9.5e-20 100.1 73 58.9
Zm00001eb353180 Zea mays HOM05D003130 ORTHO05D003547 1.2e-19 99.8 72 62.5
Zm00001eb331980 Zea mays HOM05D000433 ORTHO05D000443 1.6e-19 99.4 72 61.1
Zm00001eb140800 Zea mays HOM05D000433 ORTHO05D000443 3.6e-19 98.2 72 59.7
BolC6t40273H Brassica oleracea HOM05D003130 ORTHO05D003547 4.7e-19 97.8 67 67.2
CAN.G904.33 Capsicum annuum HOM05D003130 ORTHO05D003547 4.7e-19 97.8 72 56.9
Os05g0517500 Oryza sativa ssp. japonica HOM05D003130 ORTHO05D003547 4.7e-19 97.8 72 61.1
BolC6t40275H Brassica oleracea HOM05D003130 ORTHO05D007530 8.1e-19 97.1 69 65.2
SEGI_00894 Sequoiadendron giganteum HOM05D003130 ORTHO05D003547 1.1e-18 96.7 80 57.5
Phvul.005G080600 Phaseolus vulgaris HOM05D003130 ORTHO05D003547 1.4e-18 96.3 72 59.7
Pp3c17_12060 Physcomitrium patens HOM05D003130 ORTHO05D003547 1.4e-18 96.3 80 55.0
Actinidia07510 Actinidia chinensis HOM05D003130 ORTHO05D003547 2.3e-18 95.5 81 54.3
SEGI_10926 Sequoiadendron giganteum HOM05D003130 ORTHO05D003547 1.2e-17 93.2 72 56.9
Glyma.13G267851 Glycine max HOM05D003130 ORTHO05D003547 3.4e-17 91.7 72 54.2
CAN.G375.30 Capsicum annuum HOM05D003130 ORTHO05D003547 1.7e-16 89.4 62 61.3
Pp3c26_1140 Physcomitrium patens HOM05D003130 ORTHO05D003547 2.9e-16 88.6 80 51.2
VMungo1080G1395 Vigna mungo HOM05D003130 ORTHO05D003547 3.7e-16 88.2 72 54.2
AagrBONN_evm.TU.Sc2ySwM_117.1069 Anthoceros agrestis HOM05D003130 ORTHO05D003547 3.2e-15 85.1 79 54.4
C06p52540 Brassica napus HOM05D003130 ORTHO05D003547 5.4e-15 84.3 56 69.6
SMO165G0138 Selaginella moellendorffii HOM05D003130 ORTHO05D003547 5.4e-15 84.3 77 51.9
Zm00001eb199250 Zea mays HOM05D003130 ORTHO05D003547 5.4e-15 84.3 72 55.6
Zm00001eb318140 Zea mays HOM05D000433 ORTHO05D000443 7.1e-15 84.0 61 60.7
Peaxi162Scf00111g01453 Petunia axillaris HOM05D003130 ORTHO05D003547 3.1e-10 68.6 41 68.3
Mapoly0032s0037 Marchantia polymorpha HOM05D003130 ORTHO05D003547 5.2e-10 67.8 74 45.9
ClCG11G017400 Citrullus lanatus HOM05D003130 ORTHO05D003547 1.5e-09 66.2 41 68.3
FvH4_3g18102 Fragaria vesca HOM05D003130 ORTHO05D003547 6.4e-08 60.8 30 86.7
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 6.4e-08 60.8 63 49.2
MD00G1184200 Malus domestica HOM05D003130 ORTHO05D003547 6.4e-08 60.8 32 78.1
Cre07.g315050 Chlamydomonas reinhardtii HOM05D003130 ORTHO05D003547 8.4e-08 60.5 67 41.8
Migut.H02010 Erythranthe guttata HOM05D003130 ORTHO05D003547 8.4e-08 60.5 55 58.2
QL08p022923 Quercus lobata HOM05D003130 ORTHO05D003547 4.2e-07 58.2 42 66.7
Cre06.g275050 Chlamydomonas reinhardtii HOM05D003130 ORTHO05D003547 5.4e-07 57.8 83 37.3
PRCOL_00004178 Prasinoderma coloniale HOM05D003130 ORTHO05D003547 4.6e-06 54.7 59 50.8


User provided reference genes

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